Wall clock time and date at job start Mon Mar 30 2020 03:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00116 * 2 1 4 4 N 1.46896 * 109.47040 * 124.99931 * 3 2 1 5 5 C 1.46900 * 111.00229 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47483 * 179.97438 * 5 4 3 7 7 O 1.21295 * 119.99694 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00413 * 179.97438 * 6 5 4 9 9 C 1.37087 * 120.00334 * 180.02562 * 8 6 5 10 10 H 1.08005 * 120.00318 * 223.48639 * 9 8 6 11 11 C 1.38950 * 120.00068 * 43.48857 * 9 8 6 12 12 N 1.31405 * 120.00222 * 22.95212 * 11 9 8 13 13 Si 1.86803 * 120.00029 * 202.95534 * 11 9 8 14 14 H 1.48500 * 109.47235 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47108 * 299.99910 * 13 11 9 16 16 H 1.48503 * 109.46994 * 59.99890 * 13 11 9 17 17 C 1.46508 * 119.99419 * 0.02562 * 8 6 5 18 18 C 1.53002 * 117.49453 * 187.14975 * 17 8 6 19 19 C 1.53004 * 60.00148 * 252.51359 * 18 17 8 20 20 H 1.07994 * 119.99958 * 179.97438 * 1 2 3 21 21 H 1.07994 * 119.99787 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00048 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46710 * 5.00340 * 3 2 1 24 24 H 1.09004 * 109.47338 * 245.00376 * 3 2 1 25 25 H 1.00901 * 110.99936 * 56.04787 * 4 3 2 26 26 H 1.09005 * 109.46806 * 60.00067 * 5 4 3 27 27 H 1.09002 * 109.47033 * 300.00378 * 5 4 3 28 28 H 0.97003 * 119.99956 * 6.12342 * 12 11 9 29 29 H 1.08999 * 115.55190 * 332.85938 * 17 8 6 30 30 H 1.08996 * 117.49764 * 0.02562 * 18 17 8 31 31 H 1.08999 * 117.49659 * 145.02224 * 18 17 8 32 32 H 1.08998 * 117.50051 * 252.51877 * 19 18 17 33 33 H 1.09000 * 117.51908 * 107.48332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.7497 2.5927 1.1670 6 6 4.6935 2.5838 2.3418 7 8 4.7349 1.6216 3.0791 8 7 5.4923 3.6445 2.5725 9 6 6.3513 3.6362 3.6409 10 1 6.4520 4.5156 4.2598 11 6 7.0925 2.4964 3.9276 12 7 7.3345 1.6152 2.9833 13 14 7.7448 2.2166 5.6555 14 1 8.4972 0.9371 5.6995 15 1 8.6468 3.3349 6.0312 16 1 6.6086 2.1552 6.6097 17 6 5.4426 4.8064 1.6815 18 6 6.4865 5.9047 1.8940 19 6 5.0291 6.1473 2.2915 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5399 0.9353 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3586 2.1316 0.0896 24 1 2.6213 1.4027 -0.9314 25 1 3.6193 0.5387 1.1092 26 1 3.0561 3.4279 1.2649 27 1 4.3191 2.6996 0.2437 28 1 7.0734 1.8013 2.0678 29 1 5.1289 4.6009 0.6580 30 1 7.2104 5.7625 2.6963 31 1 6.8599 6.4219 1.0101 32 1 4.4436 6.8240 1.6692 33 1 4.7936 6.1648 3.3556 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308503728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:08 Heat of formation + Delta-G solvation = 3.298074 kcal Electronic energy + Delta-G solvation = -15506.539794 eV Core-core repulsion = 12954.310649 eV Total energy + Delta-G solvation = -2552.229145 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.69912 -38.16165 -37.24809 -34.98763 -33.87276 -32.71095 -28.92566 -26.43753 -24.50041 -23.20950 -22.94570 -21.36265 -20.77497 -18.69349 -18.12276 -17.09940 -16.59775 -16.21818 -15.65442 -15.59178 -15.36554 -15.14700 -14.61539 -14.05477 -13.58621 -13.38472 -12.92198 -12.78592 -12.64691 -12.30943 -11.98734 -11.93953 -11.89299 -11.76430 -11.33068 -10.67791 -10.45562 -10.07374 -9.34361 -9.31461 -8.54034 -6.05310 1.34835 1.48200 1.60619 1.76919 2.10376 2.44370 2.85129 3.06836 3.32638 3.43824 3.88141 3.99538 4.01959 4.18019 4.22523 4.29682 4.35019 4.47594 4.55411 4.72503 4.81753 4.93362 5.00351 5.18266 5.40400 5.68580 5.72749 5.83191 5.98407 6.18677 6.26115 6.87171 7.17192 7.53351 8.15481 8.70783 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.008407 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.413926 B = 3329.740189 C = 4179.766524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.168 4.168 3 C 0.087 3.913 4 N -0.686 5.686 5 C 0.066 3.934 6 C 0.446 3.554 7 O -0.580 6.580 8 N -0.450 5.450 9 C -0.432 4.432 10 H 0.065 0.935 11 C -0.009 4.009 12 N -0.878 5.878 13 Si 1.114 2.886 14 H -0.287 1.287 15 H -0.256 1.256 16 H -0.288 1.288 17 C 0.037 3.963 18 C -0.170 4.170 19 C -0.177 4.177 20 H 0.112 0.888 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.085 0.915 24 H 0.046 0.954 25 H 0.340 0.660 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.253 0.747 29 H 0.132 0.868 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 5.219 -8.204 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C -0.041 4.041 4 N -0.318 5.318 5 C -0.067 4.067 6 C 0.236 3.764 7 O -0.461 6.461 8 N -0.172 5.172 9 C -0.559 4.559 10 H 0.083 0.917 11 C -0.215 4.215 12 N -0.510 5.510 13 Si 0.936 3.064 14 H -0.212 1.212 15 H -0.181 1.181 16 H -0.215 1.215 17 C -0.068 4.068 18 C -0.208 4.208 19 C -0.216 4.216 20 H 0.131 0.869 21 H 0.124 0.876 22 H 0.123 0.877 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.158 0.842 26 H 0.124 0.876 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.916 3.881 -6.456 10.927 hybrid contribution -0.003 0.760 -1.574 1.748 sum -7.918 4.641 -8.030 12.195 Atomic orbital electron populations 1.23992 0.95223 1.02971 0.98916 1.22863 0.96754 0.97675 1.01380 1.21177 0.94924 0.97042 0.90960 1.60169 1.22722 1.03601 1.45283 1.21642 0.95414 0.94550 0.95062 1.21050 0.82301 0.84510 0.88568 1.90571 1.69612 1.35216 1.50731 1.43215 1.33858 1.15032 1.25084 1.19871 1.24053 1.03579 1.08444 0.91679 1.27417 0.93780 0.92852 1.07447 1.70696 1.40971 1.37906 1.01465 0.82957 0.75901 0.76838 0.70664 1.21233 1.18077 1.21501 1.22140 1.06564 0.83443 0.94615 1.23117 0.92618 1.01166 1.03854 1.23284 0.97904 0.99155 1.01214 0.86943 0.87592 0.87680 0.89690 0.93597 0.84213 0.87581 0.92367 0.93760 0.85053 0.90422 0.86149 0.85383 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 14.32 67.78 0.97 -2.56 16 2 C -0.17 -4.13 9.78 25.65 0.25 -3.88 16 3 C 0.09 2.31 6.13 85.56 0.52 2.84 16 4 N -0.69 -25.04 6.11 -521.98 -3.19 -28.23 16 5 C 0.07 2.47 4.74 85.56 0.41 2.87 16 6 C 0.45 22.92 6.47 87.66 0.57 23.49 16 7 O -0.58 -35.78 14.06 -3.07 -0.04 -35.82 16 8 N -0.45 -22.65 2.60 -613.11 -1.59 -24.24 16 9 C -0.43 -24.43 7.76 84.04 0.65 -23.78 16 10 H 0.07 3.63 7.43 -2.91 -0.02 3.60 16 11 C -0.01 -0.52 4.22 84.93 0.36 -0.17 16 12 N -0.88 -55.31 12.35 21.66 0.27 -55.04 16 13 Si 1.11 53.34 29.98 68.60 2.06 55.40 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 16 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 17 C 0.04 1.40 5.96 44.99 0.27 1.67 16 18 C -0.17 -5.79 9.81 30.60 0.30 -5.49 16 19 C -0.18 -5.60 10.30 30.60 0.32 -5.28 16 20 H 0.11 1.91 8.06 -2.91 -0.02 1.88 16 21 H 0.11 1.92 7.84 -2.91 -0.02 1.90 16 22 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16 23 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.34 13.61 8.42 -89.69 -0.76 12.85 16 26 H 0.11 3.50 8.11 -2.38 -0.02 3.48 16 27 H 0.06 1.95 7.57 -2.39 -0.02 1.94 16 28 H 0.25 16.15 7.42 -92.71 -0.69 15.46 16 29 H 0.13 4.13 6.84 -2.39 -0.02 4.11 16 30 H 0.08 3.14 6.82 -2.39 -0.02 3.13 16 31 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -74.31 282.83 2.53 -71.78 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.42 Total: 26.43 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 4.61 Total: -10.27 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.52 Total: -107.51 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.04 Total: -35.82 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 2.06 Total: 55.40 kcal Total: -74.31 2.53 -71.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308503728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.078 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds