Wall clock time and date at job start Mon Mar 30 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47159 * 2 1 4 4 C 1.36227 * 117.00123 * 180.02562 * 3 2 1 5 5 C 1.40119 * 126.05168 * 359.97438 * 4 3 2 6 6 N 1.30866 * 108.35682 * 179.71818 * 5 4 3 7 7 N 1.40081 * 108.32330 * 0.44300 * 6 5 4 8 8 C 1.46491 * 126.07850 * 179.81240 * 7 6 5 9 9 H 1.09004 * 109.47166 * 24.69251 * 8 7 6 10 10 C 1.50702 * 109.46957 * 144.68985 * 8 7 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.53000 * 109.47268 * 264.69123 * 8 7 6 19 19 C 1.52997 * 109.47188 * 65.00268 * 18 8 7 20 20 C 1.35585 * 126.05439 * 179.97438 * 4 3 2 21 21 H 1.09000 * 109.47052 * 299.99877 * 1 2 3 22 22 H 1.08999 * 109.47759 * 60.00100 * 1 2 3 23 23 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46941 * 239.99579 * 2 1 3 25 25 H 1.08995 * 109.47097 * 119.99590 * 2 1 3 26 26 H 1.08001 * 125.81717 * 0.02562 * 5 4 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 28 28 H 1.09005 * 109.46994 * 184.99759 * 18 8 7 29 29 H 1.08996 * 109.47227 * 304.99614 * 18 8 7 30 30 H 1.08996 * 109.47100 * 59.99805 * 19 18 8 31 31 H 1.08994 * 109.47398 * 180.02562 * 19 18 8 32 32 H 1.09005 * 109.46737 * 299.99648 * 19 18 8 33 33 H 1.08000 * 126.20776 * 359.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3568 1.5258 -0.0005 5 6 4.3228 0.5108 -0.0006 6 7 5.5066 1.0685 -0.0073 7 7 5.3384 2.4591 -0.0015 8 6 6.4101 3.4578 -0.0020 9 1 7.3108 3.0240 -0.4365 10 6 5.9839 4.6515 -0.8172 11 1 5.0118 4.6651 -1.2874 12 6 6.8327 5.7291 -0.9575 13 7 8.0164 5.7127 -0.3846 14 14 6.3014 7.2119 -1.9615 15 1 4.9353 6.9834 -2.4970 16 1 6.2982 8.4196 -1.0972 17 1 7.2480 7.4120 -3.0881 18 6 6.6980 3.8978 1.4348 19 6 7.2494 2.7129 2.2303 20 6 4.0043 2.7171 -0.0011 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 4.1241 -0.5508 -0.0006 27 1 8.6136 6.4706 -0.4836 28 1 7.4319 4.7037 1.4278 29 1 5.7765 4.2496 1.8986 30 1 8.1709 2.3612 1.7664 31 1 7.4540 3.0262 3.2539 32 1 6.5155 1.9070 2.2372 33 1 3.5433 3.6937 -0.0016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308542387.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:37 Heat of formation + Delta-G solvation = 25.778447 kcal Electronic energy + Delta-G solvation = -15432.051475 eV Core-core repulsion = 12880.797152 eV Total energy + Delta-G solvation = -2551.254323 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44583 -37.65541 -35.00820 -31.96554 -31.45282 -30.24852 -28.18475 -26.70866 -23.51573 -23.11775 -21.29511 -20.09620 -19.29829 -17.33023 -16.51681 -15.70114 -15.13213 -14.42436 -14.23465 -14.02769 -13.74350 -12.90659 -12.71846 -12.56277 -12.17901 -11.95907 -11.68180 -11.42605 -11.22176 -11.06246 -10.90061 -10.50936 -10.32477 -10.20945 -9.89224 -9.85948 -9.26312 -8.67651 -8.42708 -7.07243 -6.30620 -4.40751 2.77875 3.17351 3.25419 3.28710 3.42925 3.49971 3.95827 4.26604 5.02065 5.09086 5.18405 5.39481 5.43833 5.65934 5.82270 5.91060 6.06742 6.11068 6.20413 6.36255 6.38946 6.48069 6.77098 6.84667 6.97197 7.03401 7.37962 7.55145 7.65577 7.83366 8.02213 8.14511 8.64263 8.65997 9.26901 10.74923 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.007584 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.136663 B = 3691.119010 C = 4362.796009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.311 6.311 4 C -0.069 4.069 5 C -0.033 4.033 6 N -0.288 5.288 7 N -0.314 5.314 8 C 0.287 3.713 9 H 0.062 0.938 10 C -0.539 4.539 11 H 0.070 0.930 12 C 0.070 3.930 13 N -0.883 5.883 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.129 4.129 19 C -0.146 4.146 20 C 0.051 3.949 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.168 0.832 27 H 0.268 0.732 28 H 0.112 0.888 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 -6.832 1.879 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.225 6.225 4 C -0.123 4.123 5 C -0.216 4.216 6 N -0.114 5.114 7 N -0.099 5.099 8 C 0.189 3.811 9 H 0.080 0.920 10 C -0.578 4.578 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.520 5.520 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.168 4.168 19 C -0.204 4.204 20 C -0.098 4.098 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.185 0.815 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.225 -6.689 1.896 10.027 hybrid contribution -1.006 0.641 -0.493 1.290 sum -8.231 -6.049 1.403 10.310 Atomic orbital electron populations 1.21738 0.93689 1.02100 1.03170 1.22476 0.94931 0.83276 1.00495 1.85918 1.17488 1.27004 1.92070 1.18559 0.83129 0.93279 1.17380 1.23634 0.90512 0.99191 1.08289 1.77158 1.21882 0.89519 1.22838 1.49476 1.05387 1.03784 1.51269 1.19329 0.83820 0.83369 0.94605 0.92005 1.21319 1.03545 1.00547 1.32381 0.91159 1.24874 0.94572 0.98518 0.95396 1.69869 1.07792 1.31593 1.42764 0.86270 0.78966 0.81599 0.79696 1.19445 1.20605 1.20664 1.21995 1.01451 0.98776 0.94603 1.21797 1.00598 0.99245 0.98747 1.21489 0.84904 0.97886 1.05517 0.91842 0.91811 0.91037 0.93093 0.93125 0.81524 0.92230 0.87043 0.94053 0.93398 0.94504 0.93932 0.81057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.83 5.80 37.16 0.22 1.05 16 3 O -0.31 -5.49 10.23 -20.46 -0.21 -5.70 16 4 C -0.07 -1.37 6.96 -39.82 -0.28 -1.65 16 5 C -0.03 -0.63 11.07 -17.26 -0.19 -0.82 16 6 N -0.29 -6.39 12.01 30.68 0.37 -6.03 16 7 N -0.31 -7.29 3.07 -55.69 -0.17 -7.46 16 8 C 0.29 7.14 2.71 -69.09 -0.19 6.95 16 9 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 10 C -0.54 -14.03 8.31 -34.44 -0.29 -14.32 16 11 H 0.07 1.82 6.74 -52.49 -0.35 1.47 16 12 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 13 N -0.88 -23.44 11.28 55.43 0.63 -22.82 16 14 Si 0.91 20.18 29.54 -169.99 -5.02 15.16 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 19 C -0.15 -3.04 9.80 37.16 0.36 -2.67 16 20 C 0.05 1.09 10.36 -16.71 -0.17 0.92 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 25 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.17 2.55 7.69 -52.49 -0.40 2.14 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.11 2.80 5.94 -51.93 -0.31 2.49 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.89 7.23 -51.93 -0.38 0.52 16 33 H 0.17 3.52 7.59 -52.49 -0.40 3.12 16 LS Contribution 280.17 15.07 4.22 4.22 Total: -1.00 -27.86 280.17 -5.35 -33.21 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.77 Total: 2.52 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.39 Total: -13.11 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.82 Total: -36.30 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.21 Total: -5.70 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.86 -5.35 -33.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308542387.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.986 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds