Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00117 * 2 1 4 4 C 1.46896 * 111.00110 * 123.95853 * 2 1 3 5 5 H 1.08996 * 109.47537 * 46.52989 * 4 2 1 6 6 C 1.53007 * 109.46933 * 286.53111 * 4 2 1 7 7 N 1.46499 * 109.47058 * 175.77422 * 6 4 2 8 8 C 1.36936 * 120.00082 * 184.86634 * 7 6 4 9 9 H 1.08006 * 119.99727 * 354.48658 * 8 7 6 10 10 C 1.38810 * 120.00131 * 174.75118 * 8 7 6 11 11 N 1.31617 * 119.99959 * 184.60736 * 10 8 7 12 12 Si 1.86796 * 120.00031 * 4.61314 * 10 8 7 13 13 H 1.48507 * 109.47018 * 94.39358 * 12 10 8 14 14 H 1.48496 * 109.47244 * 214.39107 * 12 10 8 15 15 H 1.48494 * 109.47166 * 334.39252 * 12 10 8 16 16 C 1.50703 * 109.47403 * 166.53360 * 4 2 1 17 17 C 1.34515 * 125.79217 * 219.71488 * 16 4 2 18 18 C 1.41382 * 106.83862 * 179.88936 * 17 16 4 19 19 C 1.34507 * 106.84304 * 0.36985 * 18 17 16 20 20 O 1.34299 * 108.42093 * 359.77138 * 19 18 17 21 21 H 1.09001 * 109.46772 * 301.51799 * 1 2 3 22 22 H 1.08989 * 109.47496 * 61.51728 * 1 2 3 23 23 H 1.08998 * 109.47151 * 181.52153 * 1 2 3 24 24 H 1.08998 * 109.46980 * 183.95963 * 3 2 1 25 25 H 1.09000 * 109.47242 * 303.95553 * 3 2 1 26 26 H 1.08994 * 109.47157 * 63.95836 * 3 2 1 27 27 H 1.08998 * 109.46542 * 55.77647 * 6 4 2 28 28 H 1.09003 * 109.46685 * 295.77291 * 6 4 2 29 29 H 0.96999 * 120.00434 * 4.86780 * 7 6 4 30 30 H 0.97000 * 120.00280 * 180.02562 * 11 10 8 31 31 H 1.07996 * 126.57653 * 0.02562 * 17 16 4 32 32 H 1.08001 * 126.57433 * 180.16722 * 18 17 16 33 33 H 1.08003 * 125.79105 * 179.75297 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.4657 -1.7156 1.2124 6 6 1.7950 0.0329 2.4269 7 7 2.2274 -0.7718 3.5722 8 6 2.0490 -0.3015 4.8458 9 1 1.6723 0.6982 5.0045 10 6 2.3576 -1.1076 5.9329 11 7 2.1016 -0.6908 7.1549 12 14 3.1362 -2.7837 5.6617 13 1 4.6130 -2.6659 5.7645 14 1 2.6424 -3.7316 6.6926 15 1 2.7724 -3.2860 4.3125 16 6 3.4655 -1.0259 0.9310 17 6 4.1109 -2.1695 1.2227 18 6 5.4660 -1.9767 0.8689 19 6 5.5694 -0.7241 0.3898 20 8 4.3545 -0.1529 0.4297 21 1 -0.3633 0.5372 0.8761 22 1 -0.3634 0.4900 -0.9032 23 1 -0.3633 -1.0273 0.0273 24 1 3.0828 1.3431 -0.0710 25 1 1.5898 1.9163 -0.8524 26 1 1.7045 1.8722 0.9233 27 1 0.7405 0.2854 2.5376 28 1 2.3852 0.9483 2.3825 29 1 2.6400 -1.6378 3.4284 30 1 2.3176 -1.2539 7.9146 31 1 3.6766 -3.0640 1.6441 32 1 6.2656 -2.6960 0.9678 33 1 6.4756 -0.2568 0.0337 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308569754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = 45.783958 kcal Electronic energy + Delta-G solvation = -15889.317977 eV Core-core repulsion = 13338.931157 eV Total energy + Delta-G solvation = -2550.386819 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.26624 -38.07959 -34.49699 -32.70997 -31.58894 -30.09180 -27.47196 -27.24218 -24.69786 -22.16463 -21.61545 -21.21721 -19.70234 -17.70833 -16.96428 -15.69798 -15.61953 -15.08901 -14.55638 -14.28231 -13.72860 -13.45578 -13.02192 -12.66727 -12.63211 -12.38538 -11.98669 -11.90507 -11.44337 -11.34645 -11.20232 -11.06140 -10.83674 -10.15240 -9.67185 -9.55543 -8.89624 -8.35912 -7.97502 -7.25875 -5.79163 -3.14992 2.08513 2.95638 3.28985 3.35580 3.40639 3.44536 4.04076 4.57784 4.87188 5.11131 5.27853 5.36023 5.41702 5.47866 5.50564 5.58689 5.68065 5.72743 5.83419 5.94706 6.04192 6.14367 6.22325 6.34741 6.49984 6.58551 6.78686 7.02026 7.11018 7.49249 7.97015 8.39208 9.18413 9.90635 10.10874 11.38858 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.010544 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.778869 B = 2654.863613 C = 3392.738922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.011 3.989 4 C 0.148 3.852 5 H 0.108 0.892 6 C 0.131 3.869 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.089 0.911 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.030 3.970 17 C -0.216 4.216 18 C -0.208 4.208 19 C -0.057 4.057 20 O -0.167 6.167 21 H 0.035 0.965 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.364 0.636 30 H 0.260 0.740 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -0.324 -16.099 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.137 4.137 4 C 0.040 3.960 5 H 0.126 0.874 6 C 0.002 3.998 7 N -0.398 5.398 8 C -0.376 4.376 9 H 0.107 0.893 10 C -0.189 4.189 11 N -0.579 5.579 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.021 4.021 17 C -0.235 4.235 18 C -0.228 4.228 19 C -0.124 4.124 20 O -0.063 6.063 21 H 0.054 0.946 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.198 0.802 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.113 -0.107 -16.443 16.579 hybrid contribution 0.550 -1.032 0.858 1.450 sum 2.663 -1.139 -15.585 15.852 Atomic orbital electron populations 1.22433 0.86928 1.02349 1.01090 1.62315 1.08170 1.14612 1.40772 1.22618 1.01828 0.88537 1.00674 1.20616 0.86171 0.99188 0.90073 0.87372 1.21299 0.98191 0.94347 0.85916 1.42665 1.74273 1.20594 1.02234 1.19014 1.37520 0.99923 0.81123 0.89338 1.24658 1.01301 0.97893 0.95056 1.69713 1.52865 1.38002 0.97336 0.86539 0.79720 0.85308 0.76990 1.21002 1.21622 1.20235 1.22129 0.91413 0.88610 0.99939 1.21481 0.94236 0.99568 1.08263 1.21717 0.97388 0.97814 1.05857 1.23898 0.87438 0.94295 1.06764 1.84023 1.16936 1.40608 1.64746 0.94595 0.91282 0.91285 0.90124 0.91731 0.94342 0.94332 0.95081 0.80175 0.93026 0.83937 0.83912 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.34 60.07 0.56 0.81 16 2 N -0.54 -7.85 4.93 -244.60 -1.21 -9.06 16 3 C 0.01 0.16 8.73 60.06 0.52 0.68 16 4 C 0.15 2.52 2.30 -68.86 -0.16 2.36 16 5 H 0.11 1.79 7.92 -51.93 -0.41 1.38 16 6 C 0.13 2.66 4.73 -4.04 -0.02 2.64 16 7 N -0.75 -18.45 5.22 -59.90 -0.31 -18.76 16 8 C -0.25 -7.13 10.47 -15.06 -0.16 -7.29 16 9 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 10 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 11 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 12 Si 0.88 22.55 27.92 -169.99 -4.75 17.81 16 13 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 15 H -0.28 -6.54 6.27 56.52 0.35 -6.19 16 16 C 0.03 0.53 5.62 -35.62 -0.20 0.33 16 17 C -0.22 -3.73 10.11 -39.70 -0.40 -4.13 16 18 C -0.21 -3.17 10.91 -39.71 -0.43 -3.60 16 19 C -0.06 -0.81 12.09 29.41 0.36 -0.45 16 20 O -0.17 -2.79 8.06 5.72 0.05 -2.75 16 21 H 0.04 0.46 6.90 -51.93 -0.36 0.10 16 22 H 0.07 0.71 8.14 -51.94 -0.42 0.29 16 23 H 0.07 0.80 7.99 -51.93 -0.41 0.38 16 24 H 0.08 1.19 5.46 -51.93 -0.28 0.90 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.56 6.29 -51.93 -0.33 0.23 16 27 H 0.04 0.78 6.79 -51.93 -0.35 0.43 16 28 H 0.03 0.66 6.59 -51.93 -0.34 0.32 16 29 H 0.36 8.77 4.48 -40.82 -0.18 8.58 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 31 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.20 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 269.62 15.07 4.06 4.06 Total: -1.00 -32.70 269.62 -5.80 -38.49 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.39 Total: 7.54 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.03 Total: -8.54 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.74 Total: -56.62 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: 0.05 Total: -2.75 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.75 Total: 17.81 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.70 -5.80 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308569754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.279 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds