Wall clock time and date at job start Mon Mar 30 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00117 * 2 1 4 4 C 1.46896 * 111.00110 * 123.95853 * 2 1 3 5 5 H 1.08996 * 109.47537 * 46.52989 * 4 2 1 6 6 C 1.53007 * 109.46933 * 286.53111 * 4 2 1 7 7 N 1.46499 * 109.47058 * 175.77422 * 6 4 2 8 8 C 1.36936 * 120.00082 * 184.86634 * 7 6 4 9 9 H 1.08006 * 119.99727 * 354.48658 * 8 7 6 10 10 C 1.38810 * 120.00131 * 174.75118 * 8 7 6 11 11 N 1.31617 * 119.99959 * 184.60736 * 10 8 7 12 12 Si 1.86796 * 120.00031 * 4.61314 * 10 8 7 13 13 H 1.48507 * 109.47018 * 94.39358 * 12 10 8 14 14 H 1.48496 * 109.47244 * 214.39107 * 12 10 8 15 15 H 1.48494 * 109.47166 * 334.39252 * 12 10 8 16 16 C 1.50703 * 109.47403 * 166.53360 * 4 2 1 17 17 C 1.34515 * 125.79217 * 219.71488 * 16 4 2 18 18 C 1.41382 * 106.83862 * 179.88936 * 17 16 4 19 19 C 1.34507 * 106.84304 * 0.36985 * 18 17 16 20 20 O 1.34299 * 108.42093 * 359.77138 * 19 18 17 21 21 H 1.09001 * 109.46772 * 301.51799 * 1 2 3 22 22 H 1.08989 * 109.47496 * 61.51728 * 1 2 3 23 23 H 1.08998 * 109.47151 * 181.52153 * 1 2 3 24 24 H 1.08998 * 109.46980 * 183.95963 * 3 2 1 25 25 H 1.09000 * 109.47242 * 303.95553 * 3 2 1 26 26 H 1.08994 * 109.47157 * 63.95836 * 3 2 1 27 27 H 1.08998 * 109.46542 * 55.77647 * 6 4 2 28 28 H 1.09003 * 109.46685 * 295.77291 * 6 4 2 29 29 H 0.96999 * 120.00434 * 4.86780 * 7 6 4 30 30 H 0.97000 * 120.00280 * 180.02562 * 11 10 8 31 31 H 1.07996 * 126.57653 * 0.02562 * 17 16 4 32 32 H 1.08001 * 126.57433 * 180.16722 * 18 17 16 33 33 H 1.08003 * 125.79105 * 179.75297 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.4657 -1.7156 1.2124 6 6 1.7950 0.0329 2.4269 7 7 2.2274 -0.7718 3.5722 8 6 2.0490 -0.3015 4.8458 9 1 1.6723 0.6982 5.0045 10 6 2.3576 -1.1076 5.9329 11 7 2.1016 -0.6908 7.1549 12 14 3.1362 -2.7837 5.6617 13 1 4.6130 -2.6659 5.7645 14 1 2.6424 -3.7316 6.6926 15 1 2.7724 -3.2860 4.3125 16 6 3.4655 -1.0259 0.9310 17 6 4.1109 -2.1695 1.2227 18 6 5.4660 -1.9767 0.8689 19 6 5.5694 -0.7241 0.3898 20 8 4.3545 -0.1529 0.4297 21 1 -0.3633 0.5372 0.8761 22 1 -0.3634 0.4900 -0.9032 23 1 -0.3633 -1.0273 0.0273 24 1 3.0828 1.3431 -0.0710 25 1 1.5898 1.9163 -0.8524 26 1 1.7045 1.8722 0.9233 27 1 0.7405 0.2854 2.5376 28 1 2.3852 0.9483 2.3825 29 1 2.6400 -1.6378 3.4284 30 1 2.3176 -1.2539 7.9146 31 1 3.6766 -3.0640 1.6441 32 1 6.2656 -2.6960 0.9678 33 1 6.4756 -0.2568 0.0337 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308569754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:19 Heat of formation + Delta-G solvation = 21.873526 kcal Electronic energy + Delta-G solvation = -15890.354811 eV Core-core repulsion = 13338.931157 eV Total energy + Delta-G solvation = -2551.423653 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.46745 -39.37285 -36.35796 -34.03758 -33.48577 -31.57174 -28.77291 -28.51102 -26.24230 -24.04575 -22.82178 -22.48450 -21.02043 -19.77088 -18.17956 -17.13621 -17.00191 -16.28610 -16.18298 -15.94401 -15.11811 -14.91357 -14.82697 -14.26743 -13.85553 -13.55580 -13.46429 -13.09540 -13.01908 -12.91202 -12.63510 -12.48509 -12.31446 -12.08465 -11.87913 -11.04210 -10.78233 -9.53547 -9.38652 -9.19604 -8.08596 -5.43346 0.88092 1.32614 1.37571 1.44100 1.76094 2.13668 2.43156 2.85208 3.21925 3.61787 3.66957 3.95453 4.11582 4.21842 4.32730 4.35587 4.44849 4.63387 4.65965 4.80991 4.88894 4.96074 5.02748 5.04035 5.06469 5.33990 5.64342 5.66564 5.84144 6.00170 6.14402 6.29544 7.00466 7.74244 7.95904 9.12419 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.010544 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.778869 B = 2654.863613 C = 3392.738922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.534 5.534 3 C 0.012 3.988 4 C 0.159 3.841 5 H 0.113 0.887 6 C 0.134 3.866 7 N -0.752 5.752 8 C -0.240 4.240 9 H 0.054 0.946 10 C -0.058 4.058 11 N -0.979 5.979 12 Si 0.952 3.048 13 H -0.281 1.281 14 H -0.289 1.289 15 H -0.248 1.248 16 C 0.004 3.996 17 C -0.231 4.231 18 C -0.225 4.225 19 C -0.049 4.049 20 O -0.178 6.178 21 H 0.026 0.974 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.025 0.975 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.369 0.631 30 H 0.260 0.740 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -1.380 -18.187 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.135 4.135 4 C 0.050 3.950 5 H 0.131 0.869 6 C 0.006 3.994 7 N -0.399 5.399 8 C -0.371 4.371 9 H 0.072 0.928 10 C -0.250 4.250 11 N -0.629 5.629 12 Si 0.778 3.222 13 H -0.207 1.207 14 H -0.216 1.216 15 H -0.173 1.173 16 C -0.047 4.047 17 C -0.251 4.251 18 C -0.244 4.244 19 C -0.116 4.116 20 O -0.074 6.074 21 H 0.045 0.955 22 H 0.112 0.888 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.203 0.797 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.185 0.815 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.977 -1.155 -18.589 18.862 hybrid contribution 0.278 -0.581 1.454 1.591 sum 3.255 -1.736 -17.135 17.527 Atomic orbital electron populations 1.22556 0.85452 1.03149 1.01873 1.62391 1.09488 1.14795 1.39004 1.22632 1.01487 0.88274 1.01140 1.20413 0.86748 0.99027 0.88853 0.86941 1.21379 0.97539 0.94089 0.86421 1.42619 1.74386 1.21124 1.01748 1.18972 1.36309 0.98579 0.83269 0.92790 1.25490 1.02417 1.02425 0.94630 1.69884 1.54668 1.39898 0.98411 0.85452 0.78443 0.80045 0.78245 1.20721 1.21553 1.17252 1.22199 0.91768 0.89224 1.01497 1.21768 0.95498 0.99604 1.08221 1.22077 0.97182 0.98899 1.06225 1.24789 0.87655 0.94182 1.04956 1.84027 1.17743 1.40863 1.64815 0.95530 0.88839 0.90464 0.90982 0.89123 0.95666 0.94433 0.96121 0.79660 0.93127 0.83791 0.81548 0.74545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.34 127.69 1.19 1.58 16 2 N -0.53 -14.73 4.93 -927.77 -4.58 -19.31 16 3 C 0.01 0.32 8.73 127.69 1.11 1.44 16 4 C 0.16 5.21 2.30 44.17 0.10 5.32 16 5 H 0.11 3.55 7.92 -2.39 -0.02 3.53 16 6 C 0.13 5.39 4.73 86.38 0.41 5.80 16 7 N -0.75 -36.68 5.22 -343.44 -1.79 -38.47 16 8 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 9 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 10 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 11 N -0.98 -63.48 13.97 21.65 0.30 -63.18 16 12 Si 0.95 46.24 27.92 68.60 1.92 48.15 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 15 H -0.25 -10.77 6.27 99.48 0.62 -10.15 16 16 C 0.00 0.13 5.62 24.83 0.14 0.27 16 17 C -0.23 -7.53 10.11 22.19 0.22 -7.31 16 18 C -0.22 -6.21 10.91 22.19 0.24 -5.97 16 19 C -0.05 -1.26 12.09 66.97 0.81 -0.45 16 20 O -0.18 -5.62 8.06 -2.46 -0.02 -5.64 16 21 H 0.03 0.65 6.90 -2.39 -0.02 0.63 16 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.08 1.62 7.99 -2.39 -0.02 1.60 16 24 H 0.07 2.03 5.46 -2.39 -0.01 2.01 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 26 H 0.02 0.72 6.29 -2.39 -0.02 0.70 16 27 H 0.04 1.53 6.79 -2.39 -0.02 1.51 16 28 H 0.02 0.89 6.59 -2.39 -0.02 0.87 16 29 H 0.37 17.21 4.48 -92.71 -0.42 16.80 16 30 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 32 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.24 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -70.68 269.62 2.01 -68.66 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.60 Total: 25.38 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 5.58 Total: -15.60 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -6.06 Total: -120.96 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.02 Total: -5.64 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.92 Total: 48.15 kcal Total: -70.68 2.01 -68.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308569754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.536 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds