Wall clock time and date at job start Mon Mar 30 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99652 * 2 1 4 4 C 1.46906 * 111.00177 * 123.95054 * 2 1 3 5 5 H 1.09003 * 109.46640 * 57.26279 * 4 2 1 6 6 C 1.52999 * 109.46903 * 177.26330 * 4 2 1 7 7 N 1.46496 * 109.47106 * 305.00086 * 6 4 2 8 8 C 1.36938 * 119.99721 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00174 * 0.02562 * 8 7 6 10 10 C 1.38816 * 120.00164 * 180.02562 * 8 7 6 11 11 N 1.31615 * 119.99731 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00183 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47103 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47066 * 119.99767 * 12 10 8 15 15 H 1.48501 * 109.46799 * 239.99715 * 12 10 8 16 16 C 1.50698 * 109.47106 * 297.26696 * 4 2 1 17 17 C 1.34512 * 125.79019 * 132.11861 * 16 4 2 18 18 C 1.41383 * 106.83917 * 179.97438 * 17 16 4 19 19 C 1.34507 * 106.84221 * 0.02562 * 18 17 16 20 20 O 1.34304 * 125.78795 * 311.80853 * 16 4 2 21 21 H 1.09002 * 109.47665 * 299.99497 * 1 2 3 22 22 H 1.08996 * 109.47467 * 60.00494 * 1 2 3 23 23 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47019 * 174.50923 * 3 2 1 25 25 H 1.08998 * 109.47484 * 294.51299 * 3 2 1 26 26 H 1.09003 * 109.46946 * 54.51479 * 3 2 1 27 27 H 1.08998 * 109.46598 * 185.00053 * 6 4 2 28 28 H 1.09004 * 109.47093 * 65.00523 * 6 4 2 29 29 H 0.96994 * 120.00429 * 0.02562 * 7 6 4 30 30 H 0.97001 * 119.99893 * 180.02562 * 11 10 8 31 31 H 1.08000 * 126.58058 * 0.03796 * 17 16 4 32 32 H 1.08000 * 126.57644 * 179.97438 * 18 17 16 33 33 H 1.08008 * 125.78801 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.6068 -1.7837 1.1014 6 6 3.5234 -0.8005 1.0657 7 7 3.9391 -1.3281 -0.2362 8 6 5.2706 -1.4526 -0.5309 9 1 6.0142 -1.1622 0.1965 10 6 5.6647 -1.9519 -1.7648 11 7 4.7585 -2.3053 -2.6515 12 14 7.4810 -2.1224 -2.1666 13 1 8.2894 -1.6592 -1.0102 14 1 7.7935 -3.5460 -2.4511 15 1 7.8039 -1.2970 -3.3581 16 6 1.5678 -0.1105 2.4255 17 6 1.0246 -0.7371 3.4845 18 6 0.7803 0.2520 4.4647 19 6 1.1884 1.4240 3.9459 20 8 1.6699 1.1975 2.7127 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0806 1.3441 0.0983 25 1 1.7275 1.8635 -0.9350 26 1 1.5686 1.9244 0.8368 27 1 3.9099 -1.4418 1.8579 28 1 3.9160 0.2086 1.1911 29 1 3.2714 -1.5892 -0.8894 30 1 5.0338 -2.6546 -3.5135 31 1 0.8160 -1.7934 3.5701 32 1 0.3482 0.0966 5.4422 33 1 1.1418 2.3836 4.4393 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308569756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:21 Heat of formation + Delta-G solvation = 43.814638 kcal Electronic energy + Delta-G solvation = -15731.699198 eV Core-core repulsion = 13181.226983 eV Total energy + Delta-G solvation = -2550.472215 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.48963 -37.70856 -34.08613 -32.92698 -31.42325 -29.91761 -27.40935 -26.91725 -24.13371 -22.63673 -21.60517 -21.16636 -19.64863 -17.45576 -16.65668 -16.04130 -15.43405 -14.97463 -14.38937 -14.20874 -13.69905 -13.14065 -12.86649 -12.70752 -12.55462 -12.40625 -11.86204 -11.79858 -11.27928 -11.09092 -10.83278 -10.74268 -10.55172 -9.97499 -9.78151 -9.64398 -8.79899 -8.34935 -7.98381 -6.79701 -5.65879 -2.93744 1.87624 2.73671 3.13799 3.48993 3.54520 3.56764 4.35602 4.63928 4.82171 5.13733 5.14447 5.42483 5.54186 5.64974 5.69209 5.79822 5.85883 5.94620 6.01322 6.04816 6.11168 6.21860 6.38580 6.48821 6.60597 6.68226 6.76302 7.20402 7.40124 7.47676 7.78519 8.52826 9.65124 10.24431 10.63261 11.56577 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041257 B = 0.006902 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.512104 B = 4056.022320 C = 4337.245988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.516 5.516 3 C 0.020 3.980 4 C 0.154 3.846 5 H 0.110 0.890 6 C 0.162 3.838 7 N -0.720 5.720 8 C -0.237 4.237 9 H 0.068 0.932 10 C -0.013 4.013 11 N -0.928 5.928 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.019 4.019 17 C -0.216 4.216 18 C -0.213 4.213 19 C -0.059 4.059 20 O -0.165 6.165 21 H 0.020 0.980 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.025 0.975 28 H 0.023 0.977 29 H 0.394 0.606 30 H 0.253 0.747 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 6.356 11.185 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.237 5.237 3 C -0.127 4.127 4 C 0.045 3.955 5 H 0.128 0.872 6 C 0.034 3.966 7 N -0.365 5.365 8 C -0.369 4.369 9 H 0.086 0.914 10 C -0.209 4.209 11 N -0.577 5.577 12 Si 0.736 3.264 13 H -0.207 1.207 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.072 4.072 17 C -0.236 4.236 18 C -0.232 4.232 19 C -0.126 4.126 20 O -0.061 6.061 21 H 0.039 0.961 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.229 0.771 30 H 0.063 0.937 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.430 6.351 10.526 15.493 hybrid contribution 0.344 0.113 0.616 0.715 sum -9.086 6.464 11.142 15.763 Atomic orbital electron populations 1.22390 0.87916 1.01846 1.00138 1.62001 1.06967 1.14791 1.39936 1.22577 1.02219 0.87851 1.00091 1.20993 0.98097 0.96338 0.80112 0.87203 1.20701 0.88078 0.97169 0.90672 1.42216 1.05104 1.76484 1.12716 1.19261 0.83734 1.35314 0.98574 0.91400 1.24711 0.97253 1.02227 0.96702 1.69697 1.31363 1.49527 1.07119 0.86158 0.85222 0.77239 0.77826 1.20672 1.21958 1.21957 1.23891 1.02579 0.81159 0.99547 1.21627 1.07213 1.00720 0.94073 1.21758 1.07334 0.92802 1.01333 1.24037 1.03340 1.00364 0.84890 1.84229 1.64407 1.26757 1.30720 0.96126 0.91442 0.91528 0.89975 0.91881 0.94921 0.95766 0.95953 0.77108 0.93697 0.83685 0.83914 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.26 60.06 0.56 0.93 16 2 N -0.52 -9.09 4.47 -244.58 -1.09 -10.18 16 3 C 0.02 0.35 8.76 60.07 0.53 0.87 16 4 C 0.15 2.72 2.42 -68.86 -0.17 2.55 16 5 H 0.11 1.89 8.11 -51.93 -0.42 1.46 16 6 C 0.16 3.43 5.21 -4.04 -0.02 3.41 16 7 N -0.72 -18.69 5.43 -59.91 -0.33 -19.01 16 8 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 12 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 C -0.02 -0.30 4.61 -35.63 -0.16 -0.46 16 17 C -0.22 -3.06 10.79 -39.70 -0.43 -3.49 16 18 C -0.21 -2.64 10.91 -39.70 -0.43 -3.07 16 19 C -0.06 -0.72 12.09 29.41 0.36 -0.36 16 20 O -0.17 -2.54 7.86 5.70 0.04 -2.50 16 21 H 0.02 0.29 7.31 -51.93 -0.38 -0.09 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 24 H 0.08 1.58 5.92 -51.93 -0.31 1.28 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.52 5.68 -51.93 -0.29 0.22 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.49 6.46 -51.93 -0.34 0.16 16 29 H 0.39 10.84 7.33 -40.82 -0.30 10.54 16 30 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.20 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -31.61 274.89 -6.09 -37.70 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.54 Total: 7.01 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.02 Total: -7.04 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.69 Total: -57.09 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.61 -6.09 -37.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308569756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.519 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds