Wall clock time and date at job start Mon Mar 30 2020 03:24:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46903 * 110.99652 * 2 1
4 4 C 1.46906 * 111.00177 * 123.95054 * 2 1 3
5 5 H 1.09003 * 109.46640 * 57.26279 * 4 2 1
6 6 C 1.52999 * 109.46903 * 177.26330 * 4 2 1
7 7 N 1.46496 * 109.47106 * 305.00086 * 6 4 2
8 8 C 1.36938 * 119.99721 * 180.02562 * 7 6 4
9 9 H 1.08000 * 120.00174 * 0.02562 * 8 7 6
10 10 C 1.38816 * 120.00164 * 180.02562 * 8 7 6
11 11 N 1.31615 * 119.99731 * 0.02562 * 10 8 7
12 12 Si 1.86802 * 120.00183 * 180.02562 * 10 8 7
13 13 H 1.48503 * 109.47103 * 359.97438 * 12 10 8
14 14 H 1.48501 * 109.47066 * 119.99767 * 12 10 8
15 15 H 1.48501 * 109.46799 * 239.99715 * 12 10 8
16 16 C 1.50698 * 109.47106 * 297.26696 * 4 2 1
17 17 C 1.34512 * 125.79019 * 132.11861 * 16 4 2
18 18 C 1.41383 * 106.83917 * 179.97438 * 17 16 4
19 19 C 1.34507 * 106.84221 * 0.02562 * 18 17 16
20 20 O 1.34304 * 125.78795 * 311.80853 * 16 4 2
21 21 H 1.09002 * 109.47665 * 299.99497 * 1 2 3
22 22 H 1.08996 * 109.47467 * 60.00494 * 1 2 3
23 23 H 1.09003 * 109.46907 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.47019 * 174.50923 * 3 2 1
25 25 H 1.08998 * 109.47484 * 294.51299 * 3 2 1
26 26 H 1.09003 * 109.46946 * 54.51479 * 3 2 1
27 27 H 1.08998 * 109.46598 * 185.00053 * 6 4 2
28 28 H 1.09004 * 109.47093 * 65.00523 * 6 4 2
29 29 H 0.96994 * 120.00429 * 0.02562 * 7 6 4
30 30 H 0.97001 * 119.99893 * 180.02562 * 11 10 8
31 31 H 1.08000 * 126.58058 * 0.03796 * 17 16 4
32 32 H 1.08000 * 126.57644 * 179.97438 * 18 17 16
33 33 H 1.08008 * 125.78801 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 1.9955 -0.7659 1.1377
5 1 1.6068 -1.7837 1.1014
6 6 3.5234 -0.8005 1.0657
7 7 3.9391 -1.3281 -0.2362
8 6 5.2706 -1.4526 -0.5309
9 1 6.0142 -1.1622 0.1965
10 6 5.6647 -1.9519 -1.7648
11 7 4.7585 -2.3053 -2.6515
12 14 7.4810 -2.1224 -2.1666
13 1 8.2894 -1.6592 -1.0102
14 1 7.7935 -3.5460 -2.4511
15 1 7.8039 -1.2970 -3.3581
16 6 1.5678 -0.1105 2.4255
17 6 1.0246 -0.7371 3.4845
18 6 0.7803 0.2520 4.4647
19 6 1.1884 1.4240 3.9459
20 8 1.6699 1.1975 2.7127
21 1 -0.3634 0.5137 0.8900
22 1 -0.3634 0.5137 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 3.0806 1.3441 0.0983
25 1 1.7275 1.8635 -0.9350
26 1 1.5686 1.9244 0.8368
27 1 3.9099 -1.4418 1.8579
28 1 3.9160 0.2086 1.1911
29 1 3.2714 -1.5892 -0.8894
30 1 5.0338 -2.6546 -3.5135
31 1 0.8160 -1.7934 3.5701
32 1 0.3482 0.0966 5.4422
33 1 1.1418 2.3836 4.4393
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308569756.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:21
Heat of formation + Delta-G solvation = 43.814638 kcal
Electronic energy + Delta-G solvation = -15731.699198 eV
Core-core repulsion = 13181.226983 eV
Total energy + Delta-G solvation = -2550.472215 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-42.48963 -37.70856 -34.08613 -32.92698 -31.42325 -29.91761 -27.40935 -26.91725
-24.13371 -22.63673 -21.60517 -21.16636 -19.64863 -17.45576 -16.65668 -16.04130
-15.43405 -14.97463 -14.38937 -14.20874 -13.69905 -13.14065 -12.86649 -12.70752
-12.55462 -12.40625 -11.86204 -11.79858 -11.27928 -11.09092 -10.83278 -10.74268
-10.55172 -9.97499 -9.78151 -9.64398 -8.79899 -8.34935 -7.98381 -6.79701
-5.65879 -2.93744 1.87624 2.73671 3.13799 3.48993 3.54520 3.56764
4.35602 4.63928 4.82171 5.13733 5.14447 5.42483 5.54186 5.64974
5.69209 5.79822 5.85883 5.94620 6.01322 6.04816 6.11168 6.21860
6.38580 6.48821 6.60597 6.68226 6.76302 7.20402 7.40124 7.47676
7.78519 8.52826 9.65124 10.24431 10.63261 11.56577
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.041257 B = 0.006902 C = 0.006454
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 678.512104 B = 4056.022320 C = 4337.245988
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.516 5.516
3 C 0.020 3.980
4 C 0.154 3.846
5 H 0.110 0.890
6 C 0.162 3.838
7 N -0.720 5.720
8 C -0.237 4.237
9 H 0.068 0.932
10 C -0.013 4.013
11 N -0.928 5.928
12 Si 0.904 3.096
13 H -0.281 1.281
14 H -0.292 1.292
15 H -0.292 1.292
16 C -0.019 4.019
17 C -0.216 4.216
18 C -0.213 4.213
19 C -0.059 4.059
20 O -0.165 6.165
21 H 0.020 0.980
22 H 0.067 0.933
23 H 0.066 0.934
24 H 0.082 0.918
25 H 0.062 0.938
26 H 0.033 0.967
27 H 0.025 0.975
28 H 0.023 0.977
29 H 0.394 0.606
30 H 0.253 0.747
31 H 0.145 0.855
32 H 0.143 0.857
33 H 0.196 0.804
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.890 6.356 11.185 16.227
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.237 5.237
3 C -0.127 4.127
4 C 0.045 3.955
5 H 0.128 0.872
6 C 0.034 3.966
7 N -0.365 5.365
8 C -0.369 4.369
9 H 0.086 0.914
10 C -0.209 4.209
11 N -0.577 5.577
12 Si 0.736 3.264
13 H -0.207 1.207
14 H -0.220 1.220
15 H -0.220 1.220
16 C -0.072 4.072
17 C -0.236 4.236
18 C -0.232 4.232
19 C -0.126 4.126
20 O -0.061 6.061
21 H 0.039 0.961
22 H 0.086 0.914
23 H 0.085 0.915
24 H 0.100 0.900
25 H 0.081 0.919
26 H 0.051 0.949
27 H 0.042 0.958
28 H 0.040 0.960
29 H 0.229 0.771
30 H 0.063 0.937
31 H 0.163 0.837
32 H 0.161 0.839
33 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges -9.430 6.351 10.526 15.493
hybrid contribution 0.344 0.113 0.616 0.715
sum -9.086 6.464 11.142 15.763
Atomic orbital electron populations
1.22390 0.87916 1.01846 1.00138 1.62001 1.06967 1.14791 1.39936
1.22577 1.02219 0.87851 1.00091 1.20993 0.98097 0.96338 0.80112
0.87203 1.20701 0.88078 0.97169 0.90672 1.42216 1.05104 1.76484
1.12716 1.19261 0.83734 1.35314 0.98574 0.91400 1.24711 0.97253
1.02227 0.96702 1.69697 1.31363 1.49527 1.07119 0.86158 0.85222
0.77239 0.77826 1.20672 1.21958 1.21957 1.23891 1.02579 0.81159
0.99547 1.21627 1.07213 1.00720 0.94073 1.21758 1.07334 0.92802
1.01333 1.24037 1.03340 1.00364 0.84890 1.84229 1.64407 1.26757
1.30720 0.96126 0.91442 0.91528 0.89975 0.91881 0.94921 0.95766
0.95953 0.77108 0.93697 0.83685 0.83914 0.78704
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 9.26 60.06 0.56 0.93 16
2 N -0.52 -9.09 4.47 -244.58 -1.09 -10.18 16
3 C 0.02 0.35 8.76 60.07 0.53 0.87 16
4 C 0.15 2.72 2.42 -68.86 -0.17 2.55 16
5 H 0.11 1.89 8.11 -51.93 -0.42 1.46 16
6 C 0.16 3.43 5.21 -4.04 -0.02 3.41 16
7 N -0.72 -18.69 5.43 -59.91 -0.33 -19.01 16
8 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16
9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16
10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16
11 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16
12 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16
13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
16 C -0.02 -0.30 4.61 -35.63 -0.16 -0.46 16
17 C -0.22 -3.06 10.79 -39.70 -0.43 -3.49 16
18 C -0.21 -2.64 10.91 -39.70 -0.43 -3.07 16
19 C -0.06 -0.72 12.09 29.41 0.36 -0.36 16
20 O -0.17 -2.54 7.86 5.70 0.04 -2.50 16
21 H 0.02 0.29 7.31 -51.93 -0.38 -0.09 16
22 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16
23 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16
24 H 0.08 1.58 5.92 -51.93 -0.31 1.28 16
25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
26 H 0.03 0.52 5.68 -51.93 -0.29 0.22 16
27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.02 0.49 6.46 -51.93 -0.34 0.16 16
29 H 0.39 10.84 7.33 -40.82 -0.30 10.54 16
30 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
31 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16
32 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16
33 H 0.20 1.62 8.06 -52.48 -0.42 1.19 16
LS Contribution 274.89 15.07 4.14 4.14
Total: -1.00 -31.61 274.89 -6.09 -37.70
By element:
Atomic # 1 Polarization: 11.56 SS G_CDS: -4.54 Total: 7.01 kcal
Atomic # 6 Polarization: -7.02 SS G_CDS: -0.02 Total: -7.04 kcal
Atomic # 7 Polarization: -56.39 SS G_CDS: -0.69 Total: -57.09 kcal
Atomic # 8 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal
Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal
Total LS contribution 4.14 Total: 4.14 kcal
Total: -31.61 -6.09 -37.70 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308569756.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.519 kcal
(2) G-P(sol) polarization free energy of solvation -31.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.909 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.815 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds