Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47237 * 2 1 4 4 C 1.41372 * 126.80475 * 125.29000 * 3 2 1 5 5 C 1.35444 * 103.98910 * 180.09696 * 4 3 2 6 6 C 1.50699 * 126.78128 * 179.91163 * 5 4 3 7 7 N 1.46895 * 109.47505 * 89.70877 * 6 5 4 8 8 C 1.46902 * 111.00561 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.46719 * 34.99912 * 8 7 6 10 10 C 1.52997 * 109.47094 * 275.00137 * 8 7 6 11 11 C 1.50697 * 109.47181 * 154.99698 * 8 7 6 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47262 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46882 * 119.99668 * 15 13 11 18 18 H 1.48501 * 109.47152 * 239.99726 * 15 13 11 19 19 O 1.34044 * 106.44617 * 359.64526 * 5 4 3 20 20 N 1.20922 * 111.56347 * 0.23977 * 19 5 4 21 21 H 1.09001 * 109.47368 * 59.99967 * 1 2 3 22 22 H 1.09004 * 109.47135 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47164 * 299.99936 * 1 2 3 24 24 H 1.09001 * 109.47164 * 240.00064 * 2 1 3 25 25 H 1.09001 * 109.47368 * 120.00033 * 2 1 3 26 26 H 1.08002 * 128.00655 * 0.02562 * 4 3 2 27 27 H 1.09004 * 109.47109 * 329.70892 * 6 5 4 28 28 H 1.09001 * 109.47475 * 209.70930 * 6 5 4 29 29 H 1.00906 * 111.00234 * 56.04535 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99508 * 10 8 7 31 31 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 32 32 H 1.09004 * 109.47261 * 59.99681 * 10 8 7 33 33 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9312 2.0014 0.9239 5 6 3.0596 3.2802 0.4965 6 6 3.9061 4.3595 1.1207 7 7 5.2502 4.3313 0.5289 8 6 6.1056 5.3719 1.1150 9 1 5.8555 5.4969 2.1686 10 6 5.8798 6.6931 0.3771 11 6 7.5510 4.9654 0.9866 12 1 7.8085 4.0279 0.5162 13 6 8.5446 5.7902 1.4697 14 7 8.2311 6.9320 2.0420 15 14 10.3364 5.2866 1.3099 16 1 10.4215 3.9684 0.6315 17 1 11.0666 6.3025 0.5098 18 1 10.9454 5.1890 2.6607 19 8 2.2897 3.3947 -0.5948 20 7 1.7289 2.3552 -0.8541 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.4049 1.5338 1.7745 27 1 3.9784 4.1889 2.1949 28 1 3.4487 5.3317 0.9372 29 1 5.2054 4.4228 -0.4750 30 1 6.1299 6.5681 -0.6765 31 1 6.5142 7.4653 0.8123 32 1 4.8343 6.9871 0.4700 33 1 8.9301 7.5121 2.3822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308587537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = 30.174286 kcal Electronic energy + Delta-G solvation = -14954.564629 eV Core-core repulsion = 12403.500923 eV Total energy + Delta-G solvation = -2551.063705 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.83841 -38.04652 -36.39932 -34.98793 -33.17357 -32.06000 -30.09417 -27.25104 -26.27303 -25.16774 -23.86037 -22.18526 -20.63546 -18.68542 -18.52095 -17.88114 -16.77624 -16.26705 -15.80217 -15.34784 -15.09587 -14.82600 -14.45304 -13.89702 -13.61745 -13.53257 -13.29486 -12.87730 -12.72011 -12.58621 -12.42915 -12.34178 -12.16355 -11.92119 -11.76163 -11.06338 -10.93075 -10.47410 -10.37098 -9.08484 -8.08825 -6.19335 0.48274 1.32231 1.44002 1.46669 1.58220 2.13104 2.46358 3.20422 3.28009 3.46500 3.73536 4.06228 4.25233 4.30392 4.32709 4.47481 4.59669 4.75100 4.76661 4.86558 4.92101 4.99356 5.08522 5.12230 5.17114 5.35416 5.38152 5.70921 5.80522 6.24995 6.56384 6.67863 6.93074 7.29651 7.50297 8.96840 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051736 B = 0.005121 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.078231 B = 5466.373715 C = 5790.613456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.018 3.982 4 C -0.219 4.219 5 C -0.020 4.020 6 C 0.141 3.859 7 N -0.681 5.681 8 C 0.216 3.784 9 H 0.017 0.983 10 C -0.160 4.160 11 C -0.515 4.515 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.921 5.921 15 Si 0.959 3.041 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 O 0.072 5.928 20 N -0.393 5.393 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.189 0.811 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.333 0.667 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 -10.318 -1.256 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.241 4.241 5 C -0.084 4.084 6 C 0.011 3.989 7 N -0.312 5.312 8 C 0.108 3.892 9 H 0.035 0.965 10 C -0.220 4.220 11 C -0.553 4.553 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.206 1.206 19 O 0.011 5.989 20 N -0.102 5.102 21 H 0.063 0.937 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.126 0.874 26 H 0.206 0.794 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.228 -10.585 -1.823 16.276 hybrid contribution 1.120 0.834 0.203 1.411 sum -11.108 -9.751 -1.620 14.870 Atomic orbital electron populations 1.21701 0.93562 1.03247 1.01595 1.20144 0.96942 0.86214 1.05023 1.24178 0.97938 0.99303 0.92648 1.22731 1.03329 0.93217 1.04847 1.24643 0.95906 0.98559 0.89293 1.20389 0.87072 0.92614 0.98787 1.60777 1.08719 1.52374 1.09344 1.19000 0.91187 0.85811 0.93194 0.96539 1.22282 0.98330 1.02198 0.99178 1.21438 0.91564 1.04594 1.37744 0.92791 1.25656 1.02971 0.94971 0.95082 1.69994 1.33844 1.11687 1.40553 0.85495 0.80143 0.78203 0.77672 1.19487 1.20797 1.20648 1.84766 1.45854 1.30003 1.38308 1.73758 1.18834 0.93914 1.23718 0.93729 0.89487 0.92880 0.89355 0.87353 0.79353 0.87512 0.93145 0.85040 0.95083 0.91686 0.95125 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.88 71.98 0.71 -1.65 16 2 C -0.05 -0.83 6.53 29.85 0.19 -0.64 16 3 C 0.02 0.50 6.59 43.58 0.29 0.78 16 4 C -0.22 -6.04 11.05 22.40 0.25 -5.79 16 5 C -0.02 -0.64 7.00 25.04 0.18 -0.46 16 6 C 0.14 4.68 6.05 85.56 0.52 5.20 16 7 N -0.68 -27.62 6.22 -499.47 -3.11 -30.72 16 8 C 0.22 10.45 2.57 44.17 0.11 10.56 16 9 H 0.02 0.87 7.80 -2.39 -0.02 0.85 16 10 C -0.16 -7.44 8.94 71.98 0.64 -6.80 16 11 C -0.51 -27.86 8.84 25.60 0.23 -27.64 16 12 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 13 C 0.01 0.63 5.30 84.66 0.45 1.08 16 14 N -0.92 -51.67 11.32 21.45 0.24 -51.42 16 15 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 O 0.07 2.40 11.20 71.60 0.80 3.20 16 20 N -0.39 -12.55 12.06 -49.55 -0.60 -13.14 16 21 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 27 H 0.11 3.36 8.05 -2.39 -0.02 3.34 16 28 H 0.05 1.62 7.44 -2.39 -0.02 1.60 16 29 H 0.33 13.24 8.47 -89.69 -0.76 12.48 16 30 H 0.03 1.38 8.13 -2.39 -0.02 1.37 16 31 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 32 H 0.03 1.23 7.45 -2.38 -0.02 1.21 16 33 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -59.89 282.71 3.27 -56.62 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.34 Total: 15.60 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.57 Total: -25.37 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -3.46 Total: -95.29 kcal Atomic # 8 Polarization: 2.40 SS G_CDS: 0.80 Total: 3.20 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -59.89 3.27 -56.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308587537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.792 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds