Wall clock time and date at job start Mon Mar 30 2020 02:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50700 * 109.46589 * 2 1 4 4 C 1.41389 * 126.79875 * 125.00036 * 3 2 1 5 5 C 1.35448 * 103.98315 * 180.02562 * 4 3 2 6 6 C 1.50701 * 126.77334 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46921 * 89.99909 * 6 5 4 8 8 C 1.46906 * 110.99793 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47279 * 325.00167 * 8 7 6 10 10 C 1.52995 * 109.46946 * 85.00144 * 8 7 6 11 11 C 1.50701 * 109.46893 * 205.00308 * 8 7 6 12 12 H 1.07996 * 120.00253 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99674 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00353 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 119.99967 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47260 * 89.99554 * 15 13 11 17 17 H 1.48505 * 109.47264 * 209.99720 * 15 13 11 18 18 H 1.48503 * 109.47084 * 329.99980 * 15 13 11 19 19 O 1.34039 * 106.44898 * 0.23832 * 5 4 3 20 20 N 1.20927 * 111.56338 * 359.56996 * 19 5 4 21 21 H 1.09002 * 109.46546 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46893 * 299.99964 * 1 2 3 23 23 H 1.09001 * 109.46550 * 60.00267 * 1 2 3 24 24 H 1.08997 * 109.46893 * 240.00036 * 2 1 3 25 25 H 1.09001 * 109.46550 * 119.99733 * 2 1 3 26 26 H 1.08001 * 128.00500 * 0.03360 * 4 3 2 27 27 H 1.09002 * 109.47060 * 210.00090 * 6 5 4 28 28 H 1.09001 * 109.47380 * 330.00178 * 6 5 4 29 29 H 1.00898 * 110.99877 * 56.04636 * 7 6 5 30 30 H 1.09003 * 109.47112 * 59.99921 * 10 8 7 31 31 H 1.09001 * 109.47056 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47395 * 299.99746 * 10 8 7 33 33 H 0.97002 * 120.00598 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9268 2.0030 0.9274 5 6 3.0584 3.2807 0.4975 6 6 3.9034 4.3605 1.1229 7 7 5.2480 4.3338 0.5318 8 6 6.1016 5.3758 1.1183 9 1 5.4995 6.2573 1.3386 10 6 6.7308 4.8518 2.4107 11 6 7.1898 5.7419 0.1421 12 1 7.2419 5.2502 -0.8180 13 6 8.1189 6.7047 0.4749 14 7 8.0552 7.3039 1.6439 15 14 9.4682 7.1581 -0.7347 16 1 9.0001 8.2655 -1.6063 17 1 10.6765 7.5925 0.0115 18 1 9.8008 5.9768 -1.5709 19 8 2.2841 3.3967 -0.5904 20 7 1.7281 2.3555 -0.8534 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.3965 1.5367 1.7809 27 1 3.4451 5.3323 0.9396 28 1 3.9753 4.1893 2.1970 29 1 5.2036 4.4258 -0.4720 30 1 7.3329 3.9703 2.1903 31 1 7.3644 5.6248 2.8456 32 1 5.9437 4.5870 3.1167 33 1 8.7091 7.9811 1.8781 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308587539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:40 Heat of formation + Delta-G solvation = 29.213349 kcal Electronic energy + Delta-G solvation = -14952.838863 eV Core-core repulsion = 12401.733489 eV Total energy + Delta-G solvation = -2551.105375 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.83972 -37.96967 -36.39993 -35.01724 -33.13529 -32.06147 -30.18027 -27.44182 -26.26850 -25.16778 -23.87276 -21.81317 -20.63972 -18.81444 -18.50843 -17.91131 -16.93816 -16.12154 -15.81098 -15.42714 -15.19279 -14.77649 -14.42308 -14.15053 -13.62596 -13.45353 -13.14220 -12.84012 -12.74690 -12.48177 -12.46029 -12.23399 -12.17246 -11.98874 -11.75528 -10.94433 -10.91895 -10.58253 -10.35906 -9.18332 -8.13737 -6.27343 0.47914 1.32336 1.43190 1.44647 1.54808 2.12715 2.42690 3.15580 3.28061 3.46178 3.71429 4.05972 4.24968 4.30368 4.32740 4.47320 4.58696 4.77317 4.81183 4.89541 4.99455 5.10300 5.12331 5.17366 5.20411 5.35555 5.46173 5.65399 5.84995 6.22888 6.36496 6.66073 6.92217 7.29415 7.42751 8.91711 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.057987 B = 0.005001 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.748406 B = 5597.592841 C = 5784.914989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.019 3.981 4 C -0.217 4.217 5 C -0.021 4.021 6 C 0.141 3.859 7 N -0.680 5.680 8 C 0.215 3.785 9 H -0.019 1.019 10 C -0.115 4.115 11 C -0.541 4.541 12 H 0.057 0.943 13 C 0.017 3.983 14 N -0.915 5.915 15 Si 0.960 3.040 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.270 1.270 19 O 0.070 5.930 20 N -0.394 5.394 21 H 0.087 0.913 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.192 0.808 27 H 0.045 0.955 28 H 0.111 0.889 29 H 0.334 0.666 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 -11.604 0.165 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.239 4.239 5 C -0.084 4.084 6 C 0.011 3.989 7 N -0.312 5.312 8 C 0.107 3.893 9 H -0.001 1.001 10 C -0.174 4.174 11 C -0.579 4.579 12 H 0.075 0.925 13 C -0.183 4.183 14 N -0.554 5.554 15 Si 0.786 3.214 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.195 1.195 19 O 0.008 5.992 20 N -0.103 5.103 21 H 0.105 0.895 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.128 0.872 26 H 0.209 0.791 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.405 -11.872 -0.377 16.467 hybrid contribution 0.896 1.231 -0.286 1.549 sum -10.509 -10.641 -0.662 14.970 Atomic orbital electron populations 1.21706 0.93613 1.03249 1.01573 1.20149 0.96897 0.86166 1.05075 1.24201 0.98003 0.99328 0.92523 1.22738 1.03333 0.93105 1.04730 1.24629 0.95830 0.98604 0.89381 1.20412 0.86985 0.92455 0.99069 1.60773 1.08857 1.52028 1.09553 1.18992 0.90471 0.86477 0.93368 1.00131 1.21561 0.99229 0.99604 0.96957 1.21558 1.13210 1.21152 1.01988 0.92499 1.25657 0.99820 0.95793 0.96982 1.69998 1.37048 1.26446 1.21867 0.85527 0.78601 0.78427 0.78882 1.20213 1.20732 1.19486 1.84774 1.45842 1.29878 1.38664 1.73764 1.19020 0.93816 1.23726 0.89458 0.92858 0.93820 0.89367 0.87208 0.79078 0.93700 0.87094 0.84933 0.95269 0.92331 0.95031 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 71.99 0.71 -1.65 16 2 C -0.05 -0.82 6.53 29.85 0.19 -0.62 16 3 C 0.02 0.50 6.59 43.58 0.29 0.79 16 4 C -0.22 -5.88 11.05 22.40 0.25 -5.63 16 5 C -0.02 -0.66 7.00 25.04 0.18 -0.48 16 6 C 0.14 4.74 6.05 85.56 0.52 5.25 16 7 N -0.68 -27.95 6.29 -499.44 -3.14 -31.09 16 8 C 0.21 10.54 2.60 44.17 0.11 10.65 16 9 H -0.02 -1.01 7.80 -2.39 -0.02 -1.02 16 10 C -0.12 -5.45 9.19 71.98 0.66 -4.78 16 11 C -0.54 -29.22 8.59 25.60 0.22 -29.00 16 12 H 0.06 3.05 7.62 -2.91 -0.02 3.02 16 13 C 0.02 0.93 5.30 84.66 0.45 1.38 16 14 N -0.91 -51.41 11.32 21.45 0.24 -51.16 16 15 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 O 0.07 2.36 11.20 71.63 0.80 3.17 16 20 N -0.39 -12.72 12.06 -49.55 -0.60 -13.32 16 21 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 27 H 0.04 1.52 8.05 -2.39 -0.02 1.51 16 28 H 0.11 3.43 7.44 -2.39 -0.02 3.41 16 29 H 0.33 13.95 8.21 -89.70 -0.74 13.22 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 32 H 0.03 1.28 7.45 -2.39 -0.02 1.26 16 33 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -60.16 282.37 3.27 -56.88 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.36 Total: 14.63 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.58 Total: -24.09 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -3.50 Total: -95.58 kcal Atomic # 8 Polarization: 2.36 SS G_CDS: 0.80 Total: 3.17 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -60.16 3.27 -56.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308587539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.095 kcal (2) G-P(sol) polarization free energy of solvation -60.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds