Wall clock time and date at job start Mon Mar 30 2020 03:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35880 * 126.07715 * 2 1 4 4 C 1.35591 * 107.57851 * 179.74400 * 3 2 1 5 5 O 1.36229 * 126.05312 * 180.27378 * 4 3 2 6 6 C 1.42897 * 117.00317 * 180.20845 * 5 4 3 7 7 C 1.52997 * 109.47403 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47295 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47297 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47032 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00187 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00007 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00105 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99857 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46906 * 89.99987 * 14 12 10 16 16 H 1.48497 * 109.46904 * 209.99735 * 14 12 10 17 17 H 1.48499 * 109.47277 * 330.00115 * 14 12 10 18 18 C 1.40112 * 107.89580 * 0.43097 * 4 3 2 19 19 N 1.30869 * 108.35594 * 359.55850 * 18 4 3 20 20 H 1.08998 * 109.47581 * 270.00524 * 1 2 3 21 21 H 1.08998 * 109.47079 * 30.00800 * 1 2 3 22 22 H 1.08998 * 109.46879 * 150.00093 * 1 2 3 23 23 H 1.08002 * 126.21431 * 0.04963 * 3 2 1 24 24 H 1.09001 * 109.46598 * 300.00335 * 6 5 4 25 25 H 1.09002 * 109.47153 * 59.99542 * 6 5 4 26 26 H 1.08997 * 109.47227 * 299.99786 * 7 6 5 27 27 H 1.09002 * 109.47161 * 59.99766 * 7 6 5 28 28 H 1.09005 * 109.47217 * 300.00643 * 8 7 6 29 29 H 1.09002 * 109.47122 * 59.99847 * 8 7 6 30 30 H 1.08997 * 109.46902 * 299.99692 * 9 8 7 31 31 H 1.08993 * 109.47201 * 60.00238 * 9 8 7 32 32 H 0.97004 * 120.00028 * 179.97438 * 13 12 10 33 33 H 1.08002 * 125.82420 * 179.83114 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2651 1.0982 0.0000 4 6 3.5510 0.6680 0.0058 5 8 4.6607 1.4581 0.0130 6 6 5.9277 0.7972 0.0136 7 6 7.0470 1.8402 0.0214 8 6 8.4035 1.1326 0.0227 9 6 9.5228 2.1756 0.0311 10 6 10.8590 1.4785 0.0330 11 1 10.9051 0.3996 0.0291 12 6 12.0224 2.2183 0.0398 13 7 13.1884 1.6100 0.0420 14 14 11.9426 4.0846 0.0460 15 1 11.9163 4.5743 1.4476 16 1 13.1354 4.6333 -0.6478 17 1 10.7126 4.5298 -0.6570 18 6 3.5363 -0.7330 -0.0006 19 7 2.2899 -1.1321 -0.0003 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.9366 2.1271 0.0008 24 1 6.0094 0.1693 0.9008 25 1 6.0148 0.1779 -0.8791 26 1 6.9651 2.4678 -0.8660 27 1 6.9600 2.4599 0.9139 28 1 8.4852 0.5052 0.9103 29 1 8.4908 0.5127 -0.8696 30 1 9.4413 2.8032 -0.8563 31 1 9.4354 2.7951 0.9236 32 1 14.0070 2.1305 0.0464 33 1 4.4053 -1.3743 -0.0009 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385308866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:44 Heat of formation + Delta-G solvation = 25.743333 kcal Electronic energy + Delta-G solvation = -14369.394548 eV Core-core repulsion = 11818.138702 eV Total energy + Delta-G solvation = -2551.255846 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.32639 -38.14464 -34.84691 -33.13432 -32.36067 -30.19477 -28.88157 -26.62257 -25.06241 -22.14617 -21.24410 -20.51761 -20.05041 -18.00582 -16.63754 -16.22603 -15.71281 -15.37045 -14.81257 -14.47401 -14.12425 -13.99011 -13.00997 -12.87351 -12.82748 -12.47064 -12.01282 -11.81620 -11.67206 -10.93370 -10.92524 -10.60230 -10.43299 -9.90146 -9.70635 -9.60035 -9.59847 -9.16155 -8.51683 -7.93404 -6.02317 -4.00314 1.64791 2.23409 2.69560 3.33134 3.40263 3.43516 3.44803 4.45968 4.47619 4.64804 4.84313 4.95301 5.08578 5.21113 5.23149 5.32312 5.42127 5.59222 5.63393 5.90471 5.96442 6.23035 6.31027 6.60032 6.69835 6.75636 6.91225 7.32156 7.42513 7.45388 7.57047 7.81693 8.55960 9.02629 9.60396 11.11194 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.084603 B = 0.003793 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.879328 B = 7380.750388 C = 7675.274196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.375 5.375 3 C 0.010 3.990 4 C -0.018 4.018 5 O -0.307 6.307 6 C 0.066 3.934 7 C -0.119 4.119 8 C -0.099 4.099 9 C -0.014 4.014 10 C -0.521 4.521 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.004 4.004 19 N -0.276 5.276 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.180 0.820 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.453 -0.885 -0.184 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.164 5.164 3 C -0.133 4.133 4 C -0.072 4.072 5 O -0.219 6.219 6 C -0.009 4.009 7 C -0.157 4.157 8 C -0.137 4.137 9 C -0.051 4.051 10 C -0.559 4.559 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.190 4.190 19 N -0.100 5.100 20 H 0.092 0.908 21 H 0.106 0.894 22 H 0.107 0.893 23 H 0.197 0.803 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -25.140 -1.604 -0.185 25.191 hybrid contribution 0.775 1.450 0.041 1.644 sum -24.365 -0.154 -0.144 24.366 Atomic orbital electron populations 1.21796 0.73601 1.04430 1.03287 1.48205 1.06366 1.03141 1.58713 1.21507 0.88907 0.93511 1.09410 1.18741 0.87995 0.89525 1.10982 1.86028 1.12100 1.33108 1.90703 1.22917 0.80610 0.96454 1.00906 1.21694 0.93145 0.97815 1.03001 1.21398 0.91835 0.99107 1.01371 1.19565 0.94207 0.94953 0.96381 1.21166 0.88874 0.95169 1.50694 0.91043 1.25045 0.95387 0.98587 0.94583 1.69919 0.97429 1.35768 1.51295 0.86761 0.77721 0.86200 0.78517 1.20304 1.21439 1.18933 1.24121 0.96033 0.94336 1.04552 1.77241 1.01085 1.08712 1.22964 0.90842 0.89438 0.89340 0.80292 0.92497 0.92500 0.91415 0.91426 0.92546 0.92517 0.96517 0.96957 0.92765 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.62 11.48 59.84 0.69 1.31 16 2 N -0.38 -4.02 4.04 -67.85 -0.27 -4.30 16 3 C 0.01 0.11 11.56 -16.70 -0.19 -0.08 16 4 C -0.02 -0.24 6.96 -39.82 -0.28 -0.52 16 5 O -0.31 -4.55 10.23 -20.47 -0.21 -4.76 16 6 C 0.07 0.93 5.08 37.16 0.19 1.12 16 7 C -0.12 -1.93 5.58 -26.73 -0.15 -2.07 16 8 C -0.10 -1.93 5.15 -26.73 -0.14 -2.06 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 11 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 14 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 18 C 0.00 -0.05 11.07 -17.26 -0.19 -0.25 16 19 N -0.28 -3.63 12.57 30.68 0.39 -3.24 16 20 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 21 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 24 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.19 2.00 7.69 -52.49 -0.40 1.60 16 LS Contribution 285.09 15.07 4.30 4.30 Total: -1.00 -33.71 285.09 -5.29 -39.01 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.98 Total: -4.34 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.62 Total: -16.51 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.89 Total: -34.97 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.21 Total: -4.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.71 -5.29 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385308866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.751 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds