Wall clock time and date at job start Mon Mar 30 2020 02:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.53009 * 109.47023 * 64.99939 * 3 2 1 5 5 C 1.53005 * 109.46869 * 185.00140 * 4 3 2 6 6 C 1.50701 * 109.47439 * 185.00039 * 3 2 1 7 7 N 1.29953 * 126.28663 * 299.97385 * 6 3 2 8 8 O 1.21297 * 110.25127 * 179.97438 * 7 6 3 9 9 C 1.33644 * 109.81253 * 0.02562 * 8 7 6 10 10 C 1.50698 * 126.55335 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47166 * 270.02542 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99792 * 179.72330 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 N 1.31136 * 106.89732 * 0.22515 * 9 8 7 20 20 H 1.08997 * 109.47057 * 299.99642 * 1 2 3 21 21 H 1.08995 * 109.47162 * 60.00568 * 1 2 3 22 22 H 1.09006 * 109.46275 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47784 * 240.00291 * 2 1 3 24 24 H 1.09004 * 109.47391 * 120.00003 * 2 1 3 25 25 H 1.09005 * 109.47219 * 304.99937 * 3 2 1 26 26 H 1.09000 * 109.46625 * 305.00087 * 4 3 2 27 27 H 1.08996 * 109.46713 * 65.00186 * 4 3 2 28 28 H 1.08996 * 109.47003 * 60.00132 * 5 4 3 29 29 H 1.08999 * 109.46412 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47031 * 299.99765 * 5 4 3 31 31 H 1.08998 * 109.46890 * 150.02532 * 10 9 8 32 32 H 1.09002 * 109.46875 * 30.02334 * 10 9 8 33 33 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3074 5 6 2.0352 3.6025 1.2559 6 6 3.5419 1.4444 -0.1238 7 7 4.3824 0.8959 0.7017 8 8 5.5205 1.0728 0.3214 9 6 5.5141 1.7725 -0.8172 10 6 6.7192 2.2022 -1.6135 11 6 7.1811 3.5546 -1.1354 12 1 6.6544 4.0534 -0.3353 13 6 8.2762 4.1552 -1.7195 14 7 8.6760 5.3380 -1.3060 15 14 9.1868 3.2928 -3.1039 16 1 8.5900 3.6820 -4.4068 17 1 10.6178 3.6885 -3.0770 18 1 9.0764 1.8223 -2.9283 19 7 4.2588 2.0186 -1.1063 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0278 -0.0005 23 1 1.8935 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6053 1.9816 -0.8419 26 1 0.5562 2.0470 1.4401 27 1 2.1407 1.6420 2.1426 28 1 1.5296 4.0870 0.4206 29 1 1.7464 4.0898 2.1871 30 1 3.1142 3.6820 1.1232 31 1 6.4550 2.2607 -2.6693 32 1 7.5210 1.4760 -1.4792 33 1 9.4466 5.7603 -1.7167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395258261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:09 Heat of formation + Delta-G solvation = 36.865237 kcal Electronic energy + Delta-G solvation = -15324.961488 eV Core-core repulsion = 12774.187924 eV Total energy + Delta-G solvation = -2550.773564 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.80275 -37.42214 -34.77626 -33.49600 -31.90567 -31.65913 -29.02050 -27.11945 -23.86615 -23.07483 -22.66019 -21.61663 -19.25568 -17.60216 -16.88400 -16.65645 -15.07060 -14.83162 -14.49527 -14.19433 -13.80715 -13.48402 -12.72347 -12.46240 -12.39668 -12.06961 -11.78442 -11.57092 -11.41267 -11.29434 -11.10449 -10.77981 -10.68315 -10.59124 -10.47522 -10.22108 -10.15611 -9.67375 -8.96242 -8.75318 -6.23929 -4.27955 1.93627 2.96232 3.20511 3.27660 3.28555 3.72343 4.12586 4.26212 4.54777 4.91350 4.97238 5.09106 5.14040 5.23141 5.32973 5.41681 5.67336 5.73169 5.80276 5.85390 5.92104 6.06474 6.13598 6.19878 6.31660 6.40129 6.48410 6.61766 6.65240 6.87322 7.33093 8.23841 8.75615 8.92405 9.30365 10.88306 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044654 B = 0.006372 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.893246 B = 4393.091759 C = 4676.683886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.007 3.993 4 C -0.116 4.116 5 C -0.152 4.152 6 C 0.170 3.830 7 N -0.404 5.404 8 O 0.061 5.939 9 C 0.239 3.761 10 C 0.070 3.930 11 C -0.527 4.527 12 H 0.077 0.923 13 C 0.079 3.921 14 N -0.888 5.888 15 Si 0.878 3.122 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 N -0.503 5.503 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -8.612 1.535 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.014 4.014 4 C -0.154 4.154 5 C -0.210 4.210 6 C -0.104 4.104 7 N -0.117 5.117 8 O 0.007 5.993 9 C 0.021 3.979 10 C 0.031 3.969 11 C -0.566 4.566 12 H 0.095 0.905 13 C -0.125 4.125 14 N -0.525 5.525 15 Si 0.704 3.296 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.186 1.186 19 N -0.236 5.236 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.719 -8.717 1.980 15.546 hybrid contribution 0.799 -0.139 -0.752 1.106 sum -11.920 -8.855 1.228 14.900 Atomic orbital electron populations 1.21814 0.95100 1.01740 1.02136 1.21539 0.96100 0.95019 1.02736 1.19598 0.84051 0.97576 1.00128 1.21639 1.01293 0.96165 0.96297 1.21769 1.02152 0.95550 1.01507 1.25608 0.99339 0.96297 0.89118 1.74453 0.90139 1.23957 1.23162 1.85249 1.23780 1.55266 1.35015 1.29437 0.96238 0.87346 0.84921 1.18543 0.85820 0.98692 0.93892 1.20622 1.14344 0.99918 1.21698 0.90505 1.24863 0.96323 0.94629 0.96645 1.69868 1.25888 1.14776 1.41945 0.86804 0.79521 0.80624 0.82670 1.19671 1.20729 1.18615 1.71947 1.01545 1.23674 1.26459 0.92225 0.92474 0.92580 0.91808 0.91296 0.88498 0.90719 0.91423 0.92422 0.92684 0.92708 0.92020 0.92593 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 37.16 0.36 -1.02 16 2 C -0.12 -1.40 5.38 -26.73 -0.14 -1.54 16 3 C 0.01 0.09 2.33 -91.77 -0.21 -0.12 16 4 C -0.12 -1.50 5.26 -26.72 -0.14 -1.64 16 5 C -0.15 -2.17 9.73 37.16 0.36 -1.81 16 6 C 0.17 3.22 5.71 -156.37 -0.89 2.33 16 7 N -0.40 -8.15 12.16 30.90 0.38 -7.77 16 8 O 0.06 1.31 11.31 18.10 0.20 1.52 16 9 C 0.24 5.33 7.70 -13.06 -0.10 5.22 16 10 C 0.07 1.60 4.67 -29.04 -0.14 1.46 16 11 C -0.53 -14.48 9.65 -34.44 -0.33 -14.81 16 12 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 15 Si 0.88 19.93 27.47 -169.99 -4.67 15.26 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 19 N -0.50 -10.89 11.55 -9.86 -0.11 -11.00 16 20 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.07 0.76 6.34 -51.93 -0.33 0.43 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.97 7.38 -51.93 -0.38 0.59 16 31 H 0.06 1.36 7.57 -51.93 -0.39 0.97 16 32 H 0.06 1.20 7.20 -51.93 -0.37 0.82 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 279.15 15.07 4.21 4.21 Total: -1.00 -29.58 279.15 -5.34 -34.92 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.78 Total: -1.90 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.34 Total: -9.84 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 1.04 Total: -44.17 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.58 -5.34 -34.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395258261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.784 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds