Wall clock time and date at job start Mon Mar 30 2020 02:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.53009 * 109.47023 * 64.99939 * 3 2 1 5 5 C 1.53005 * 109.46869 * 185.00140 * 4 3 2 6 6 C 1.50701 * 109.47439 * 185.00039 * 3 2 1 7 7 N 1.29953 * 126.28663 * 299.97385 * 6 3 2 8 8 O 1.21297 * 110.25127 * 179.97438 * 7 6 3 9 9 C 1.33644 * 109.81253 * 0.02562 * 8 7 6 10 10 C 1.50698 * 126.55335 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47166 * 270.02542 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99792 * 179.72330 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 N 1.31136 * 106.89732 * 0.22515 * 9 8 7 20 20 H 1.08997 * 109.47057 * 299.99642 * 1 2 3 21 21 H 1.08995 * 109.47162 * 60.00568 * 1 2 3 22 22 H 1.09006 * 109.46275 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47784 * 240.00291 * 2 1 3 24 24 H 1.09004 * 109.47391 * 120.00003 * 2 1 3 25 25 H 1.09005 * 109.47219 * 304.99937 * 3 2 1 26 26 H 1.09000 * 109.46625 * 305.00087 * 4 3 2 27 27 H 1.08996 * 109.46713 * 65.00186 * 4 3 2 28 28 H 1.08996 * 109.47003 * 60.00132 * 5 4 3 29 29 H 1.08999 * 109.46412 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47031 * 299.99765 * 5 4 3 31 31 H 1.08998 * 109.46890 * 150.02532 * 10 9 8 32 32 H 1.09002 * 109.46875 * 30.02334 * 10 9 8 33 33 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3074 5 6 2.0352 3.6025 1.2559 6 6 3.5419 1.4444 -0.1238 7 7 4.3824 0.8959 0.7017 8 8 5.5205 1.0728 0.3214 9 6 5.5141 1.7725 -0.8172 10 6 6.7192 2.2022 -1.6135 11 6 7.1811 3.5546 -1.1354 12 1 6.6544 4.0534 -0.3353 13 6 8.2762 4.1552 -1.7195 14 7 8.6760 5.3380 -1.3060 15 14 9.1868 3.2928 -3.1039 16 1 8.5900 3.6820 -4.4068 17 1 10.6178 3.6885 -3.0770 18 1 9.0764 1.8223 -2.9283 19 7 4.2588 2.0186 -1.1063 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0278 -0.0005 23 1 1.8935 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6053 1.9816 -0.8419 26 1 0.5562 2.0470 1.4401 27 1 2.1407 1.6420 2.1426 28 1 1.5296 4.0870 0.4206 29 1 1.7464 4.0898 2.1871 30 1 3.1142 3.6820 1.1232 31 1 6.4550 2.2607 -2.6693 32 1 7.5210 1.4760 -1.4792 33 1 9.4466 5.7603 -1.7167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395258261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:09 Heat of formation + Delta-G solvation = 16.848306 kcal Electronic energy + Delta-G solvation = -15325.829487 eV Core-core repulsion = 12774.187924 eV Total energy + Delta-G solvation = -2551.641563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.43581 -38.62037 -36.45143 -35.34162 -33.65716 -32.72156 -30.87575 -28.24659 -25.80329 -24.51630 -23.78160 -23.09701 -20.60816 -19.45530 -18.56494 -18.45718 -16.58114 -16.34135 -15.75980 -15.37953 -15.26761 -14.75030 -14.49730 -14.20526 -13.58043 -13.25599 -13.11625 -12.94456 -12.85669 -12.61645 -12.50022 -12.34125 -12.07021 -11.99744 -11.78604 -11.75310 -11.65858 -11.44241 -10.84357 -10.64861 -8.35997 -6.48017 0.25128 1.35154 1.43613 1.45133 1.55978 2.01524 2.34184 2.72611 2.98331 3.17733 3.77348 3.88332 3.93219 4.23856 4.28073 4.44106 4.48685 4.63325 4.70333 4.75176 4.85068 4.86083 4.96561 4.97907 5.10324 5.13105 5.16532 5.20589 5.31316 5.35391 5.44559 6.07059 6.54138 7.15134 7.25676 8.80428 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044654 B = 0.006372 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.893246 B = 4393.091759 C = 4676.683886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.002 3.998 4 C -0.109 4.109 5 C -0.152 4.152 6 C 0.178 3.822 7 N -0.412 5.412 8 O 0.048 5.952 9 C 0.227 3.773 10 C 0.075 3.925 11 C -0.540 4.540 12 H 0.023 0.977 13 C 0.020 3.980 14 N -0.941 5.941 15 Si 0.955 3.045 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.230 1.230 19 N -0.519 5.519 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.007 0.993 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 -10.345 0.503 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.018 4.018 4 C -0.147 4.147 5 C -0.209 4.209 6 C -0.096 4.096 7 N -0.127 5.127 8 O -0.003 6.003 9 C 0.008 3.992 10 C 0.036 3.964 11 C -0.579 4.579 12 H 0.041 0.959 13 C -0.179 4.179 14 N -0.579 5.579 15 Si 0.776 3.224 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.153 1.153 19 N -0.254 5.254 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.019 -10.470 0.965 17.524 hybrid contribution 1.106 0.481 -0.329 1.250 sum -12.913 -9.990 0.636 16.338 Atomic orbital electron populations 1.21792 0.92320 1.03002 1.03086 1.21512 0.98370 0.92853 1.02070 1.19964 0.80918 0.99671 1.01241 1.21654 1.03539 0.94572 0.94941 1.21778 0.99052 0.97180 1.02899 1.26468 1.01199 0.94297 0.87611 1.74432 0.89898 1.24876 1.23477 1.85227 1.24625 1.55550 1.34869 1.29351 0.96480 0.88057 0.85344 1.18442 0.86789 0.96573 0.94591 1.20743 1.14467 1.02001 1.20686 0.95891 1.25922 0.97084 0.95216 0.99660 1.70029 1.26878 1.16973 1.44015 0.85602 0.77528 0.80926 0.78394 1.18610 1.20531 1.15299 1.71947 1.01704 1.24011 1.27711 0.90984 0.91780 0.91247 0.92644 0.91874 0.87837 0.86785 0.92391 0.91585 0.90835 0.97321 0.90350 0.90249 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.67 71.98 0.70 -1.45 16 2 C -0.11 -2.41 5.38 30.59 0.16 -2.25 16 3 C 0.00 0.06 2.33 -11.54 -0.03 0.03 16 4 C -0.11 -2.61 5.26 30.60 0.16 -2.45 16 5 C -0.15 -4.22 9.73 71.98 0.70 -3.52 16 6 C 0.18 6.72 5.71 138.46 0.79 7.51 16 7 N -0.41 -16.72 12.16 -60.30 -0.73 -17.45 16 8 O 0.05 2.09 11.31 74.83 0.85 2.94 16 9 C 0.23 10.21 7.70 88.38 0.68 10.89 16 10 C 0.07 3.41 4.67 29.10 0.14 3.54 16 11 C -0.54 -30.56 9.65 25.60 0.25 -30.31 16 12 H 0.02 1.49 7.98 -2.91 -0.02 1.47 16 13 C 0.02 1.13 5.47 84.66 0.46 1.59 16 14 N -0.94 -57.08 13.96 21.45 0.30 -56.79 16 15 Si 0.95 40.22 27.47 68.60 1.88 42.11 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.23 -8.50 6.54 99.48 0.65 -7.85 16 19 N -0.52 -22.66 11.55 -303.17 -3.50 -26.16 16 20 H 0.07 0.90 6.46 -2.39 -0.02 0.88 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 26 H 0.11 1.88 6.34 -2.39 -0.02 1.87 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.01 0.28 7.38 -2.39 -0.02 0.27 16 31 H 0.08 3.31 7.57 -2.39 -0.02 3.29 16 32 H 0.08 3.23 7.20 -2.39 -0.02 3.22 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -66.73 279.15 3.84 -62.89 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.03 Total: 8.87 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 4.01 Total: -16.41 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -3.94 Total: -100.39 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.85 Total: 2.94 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.88 Total: 42.11 kcal Total: -66.73 3.84 -62.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395258261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.740 kcal (2) G-P(sol) polarization free energy of solvation -66.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds