Wall clock time and date at job start Mon Mar 30 2020 03:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00423 * 2 1 4 4 N 1.46501 * 109.47103 * 125.00471 * 3 2 1 5 5 C 1.34778 * 120.00331 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99634 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00225 * 180.02562 * 5 4 3 8 8 C 1.47021 * 125.64697 * 0.04342 * 7 5 4 9 9 C 1.54371 * 107.28775 * 181.05638 * 8 7 5 10 10 C 1.55153 * 102.91837 * 22.13998 * 9 8 7 11 11 H 1.09003 * 111.00897 * 82.64119 * 10 9 8 12 12 C 1.50706 * 111.00476 * 206.45244 * 10 9 8 13 13 H 1.08000 * 119.99302 * 356.82104 * 12 10 9 14 14 C 1.37871 * 120.00436 * 176.54637 * 12 10 9 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47154 * 89.99418 * 16 14 12 18 18 H 1.48493 * 109.47010 * 209.99942 * 16 14 12 19 19 H 1.48502 * 109.46736 * 329.99638 * 16 14 12 20 20 C 1.47420 * 125.64986 * 180.02562 * 7 5 4 21 21 H 1.08009 * 119.99023 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.00836 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99618 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47146 * 5.00579 * 3 2 1 25 25 H 1.08999 * 109.47465 * 245.00290 * 3 2 1 26 26 H 0.96999 * 119.99726 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.88345 * 300.43998 * 8 7 5 28 28 H 1.08995 * 109.88397 * 61.44941 * 8 7 5 29 29 H 1.08991 * 110.70566 * 263.79469 * 9 8 7 30 30 H 1.09001 * 110.75214 * 140.50456 * 9 8 7 31 31 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 32 32 H 1.08997 * 110.36557 * 37.06312 * 20 7 5 33 33 H 1.09005 * 110.46022 * 274.79458 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 3.7793 2.4083 1.3329 6 8 3.7153 3.3576 0.5759 7 7 4.6356 2.4326 2.3734 8 6 4.8149 1.3581 3.3607 9 6 5.8748 1.8391 4.3747 10 6 5.8219 3.3825 4.2260 11 1 5.0082 3.8043 4.8160 12 6 7.1401 4.0073 4.6048 13 1 7.9439 3.3887 4.9757 14 6 7.3216 5.3675 4.4725 15 7 6.3446 6.1199 4.0153 16 14 8.9557 6.1418 4.9414 17 1 9.8534 6.1577 3.7586 18 1 8.7283 7.5326 5.4091 19 1 9.5844 5.3502 6.0293 20 6 5.5477 3.5408 2.7098 21 1 -0.5399 0.9355 0.0004 22 1 -0.5401 -0.9352 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3587 2.1316 0.0897 25 1 2.6214 1.4025 -0.9314 26 1 3.0452 0.5741 1.7350 27 1 3.8728 1.1650 3.8737 28 1 5.1586 0.4512 2.8633 29 1 6.8617 1.4597 4.1099 30 1 5.6044 1.5397 5.3874 31 1 6.4724 7.0770 3.9219 32 1 5.0700 4.4996 2.5087 33 1 6.4763 3.4547 2.1455 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397600517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:48 Heat of formation + Delta-G solvation = -12.675195 kcal Electronic energy + Delta-G solvation = -15247.599639 eV Core-core repulsion = 12694.677841 eV Total energy + Delta-G solvation = -2552.921798 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.55339 -36.99947 -35.44991 -33.09611 -32.38514 -30.37280 -28.03120 -26.22221 -24.39488 -22.34637 -20.37704 -19.74188 -19.14993 -17.42207 -16.52110 -15.98784 -15.43583 -14.83065 -14.53191 -14.08477 -13.73327 -13.28005 -12.66482 -12.43304 -12.36330 -11.86841 -11.78314 -11.33427 -11.23492 -10.94188 -10.56322 -10.51991 -9.93173 -9.84643 -9.50164 -9.28831 -9.01232 -8.77457 -8.50493 -7.70162 -6.07245 -4.12978 1.93225 3.28703 3.34551 3.37461 3.39762 3.78578 4.39737 4.58072 4.69810 4.95530 5.25773 5.51000 5.51879 5.66048 5.69619 5.74383 5.88410 6.17698 6.34874 6.46564 6.48929 6.75098 6.81317 6.86076 7.00958 7.11314 7.41572 7.70025 7.75194 7.92673 8.31380 8.60200 8.90322 9.17817 9.52936 11.02186 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059194 B = 0.005697 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.908373 B = 4913.369631 C = 5228.332228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.170 4.170 3 C 0.166 3.834 4 N -0.751 5.751 5 C 0.714 3.286 6 O -0.597 6.597 7 N -0.633 5.633 8 C 0.102 3.898 9 C -0.127 4.127 10 C 0.046 3.954 11 H 0.040 0.960 12 C -0.519 4.519 13 H 0.061 0.939 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.136 3.864 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.393 0.607 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 -12.362 -3.648 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.188 4.188 3 C 0.041 3.959 4 N -0.408 5.408 5 C 0.415 3.585 6 O -0.475 6.475 7 N -0.370 5.370 8 C -0.021 4.021 9 C -0.165 4.165 10 C 0.027 3.973 11 H 0.058 0.942 12 C -0.557 4.557 13 H 0.079 0.921 14 C -0.139 4.139 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.015 3.985 21 H 0.118 0.882 22 H 0.119 0.881 23 H 0.131 0.869 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.227 0.773 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.666 -11.431 -4.323 14.427 hybrid contribution 0.825 0.007 0.441 0.936 sum -6.841 -11.423 -3.882 13.870 Atomic orbital electron populations 1.23942 0.95777 1.02231 0.99057 1.23063 0.96209 0.98325 1.01236 1.20167 0.91314 0.94848 0.89522 1.45116 1.43448 1.19929 1.32299 1.15569 0.78883 0.82716 0.81283 1.90886 1.72301 1.36241 1.48122 1.48104 1.40866 1.21282 1.26781 1.21958 0.99223 0.90043 0.90893 1.22709 0.96986 1.00259 0.96542 1.19851 0.97808 0.88709 0.90968 0.94222 1.20973 0.98055 0.92343 1.44376 0.92054 1.25050 0.96754 0.97383 0.94698 1.69954 1.31594 1.05772 1.44817 0.86545 0.83839 0.78564 0.78786 1.20574 1.21181 1.19833 1.22601 0.89968 0.87862 0.98098 0.88160 0.88096 0.86885 0.91479 0.91101 0.77327 0.93082 0.93264 0.91507 0.91760 0.92644 0.90134 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 14.32 29.01 0.42 -1.03 16 2 C -0.17 -1.63 9.63 -36.03 -0.35 -1.98 16 3 C 0.17 2.19 6.11 -5.20 -0.03 2.15 16 4 N -0.75 -11.60 5.51 -66.42 -0.37 -11.96 16 5 C 0.71 14.91 8.49 -86.92 -0.74 14.17 16 6 O -0.60 -14.93 16.60 5.29 0.09 -14.85 16 7 N -0.63 -13.32 3.33 -176.23 -0.59 -13.91 16 8 C 0.10 1.74 6.15 -3.04 -0.02 1.72 16 9 C -0.13 -2.42 6.40 -24.87 -0.16 -2.58 16 10 C 0.05 1.12 2.91 -89.63 -0.26 0.86 16 11 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 12 C -0.52 -13.82 8.52 -34.44 -0.29 -14.12 16 13 H 0.06 1.58 7.78 -52.49 -0.41 1.18 16 14 C 0.06 1.76 5.35 -17.82 -0.10 1.67 16 15 N -0.88 -25.51 12.27 55.43 0.68 -24.83 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.14 3.38 5.76 -2.54 -0.01 3.36 16 21 H 0.10 0.84 7.84 -52.48 -0.41 0.43 16 22 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 23 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 24 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.39 5.04 7.45 -40.82 -0.30 4.73 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 2.29 7.46 -51.93 -0.39 1.90 16 33 H 0.05 1.29 8.03 -51.93 -0.42 0.88 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -31.38 281.72 -7.35 -38.73 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.84 Total: 2.38 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.54 Total: 4.23 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.27 Total: -50.70 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.38 -7.35 -38.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.054 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds