Wall clock time and date at job start Mon Mar 30 2020 03:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00423 * 2 1 4 4 N 1.46501 * 109.47103 * 125.00471 * 3 2 1 5 5 C 1.34778 * 120.00331 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99634 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00225 * 180.02562 * 5 4 3 8 8 C 1.47021 * 125.64697 * 0.04342 * 7 5 4 9 9 C 1.54371 * 107.28775 * 181.05638 * 8 7 5 10 10 C 1.55153 * 102.91837 * 22.13998 * 9 8 7 11 11 H 1.09003 * 111.00897 * 82.64119 * 10 9 8 12 12 C 1.50706 * 111.00476 * 206.45244 * 10 9 8 13 13 H 1.08000 * 119.99302 * 356.82104 * 12 10 9 14 14 C 1.37871 * 120.00436 * 176.54637 * 12 10 9 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47154 * 89.99418 * 16 14 12 18 18 H 1.48493 * 109.47010 * 209.99942 * 16 14 12 19 19 H 1.48502 * 109.46736 * 329.99638 * 16 14 12 20 20 C 1.47420 * 125.64986 * 180.02562 * 7 5 4 21 21 H 1.08009 * 119.99023 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.00836 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99618 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47146 * 5.00579 * 3 2 1 25 25 H 1.08999 * 109.47465 * 245.00290 * 3 2 1 26 26 H 0.96999 * 119.99726 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.88345 * 300.43998 * 8 7 5 28 28 H 1.08995 * 109.88397 * 61.44941 * 8 7 5 29 29 H 1.08991 * 110.70566 * 263.79469 * 9 8 7 30 30 H 1.09001 * 110.75214 * 140.50456 * 9 8 7 31 31 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 32 32 H 1.08997 * 110.36557 * 37.06312 * 20 7 5 33 33 H 1.09005 * 110.46022 * 274.79458 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 3.7793 2.4083 1.3329 6 8 3.7153 3.3576 0.5759 7 7 4.6356 2.4326 2.3734 8 6 4.8149 1.3581 3.3607 9 6 5.8748 1.8391 4.3747 10 6 5.8219 3.3825 4.2260 11 1 5.0082 3.8043 4.8160 12 6 7.1401 4.0073 4.6048 13 1 7.9439 3.3887 4.9757 14 6 7.3216 5.3675 4.4725 15 7 6.3446 6.1199 4.0153 16 14 8.9557 6.1418 4.9414 17 1 9.8534 6.1577 3.7586 18 1 8.7283 7.5326 5.4091 19 1 9.5844 5.3502 6.0293 20 6 5.5477 3.5408 2.7098 21 1 -0.5399 0.9355 0.0004 22 1 -0.5401 -0.9352 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3587 2.1316 0.0897 25 1 2.6214 1.4025 -0.9314 26 1 3.0452 0.5741 1.7350 27 1 3.8728 1.1650 3.8737 28 1 5.1586 0.4512 2.8633 29 1 6.8617 1.4597 4.1099 30 1 5.6044 1.5397 5.3874 31 1 6.4724 7.0770 3.9219 32 1 5.0700 4.4996 2.5087 33 1 6.4763 3.4547 2.1455 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397600517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:48 Heat of formation + Delta-G solvation = -34.231059 kcal Electronic energy + Delta-G solvation = -15248.534372 eV Core-core repulsion = 12694.677841 eV Total energy + Delta-G solvation = -2553.856531 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.17084 -38.62674 -36.69655 -34.98737 -33.69765 -32.05142 -29.75623 -27.63714 -26.13684 -23.94615 -21.57918 -21.37250 -20.52647 -18.94393 -18.47998 -17.31980 -16.95672 -16.43865 -16.19559 -15.59620 -15.09657 -14.39972 -14.26088 -14.18026 -13.65822 -13.60915 -13.41053 -13.07815 -12.80335 -12.45495 -12.30915 -12.02138 -11.59018 -11.39049 -11.14438 -11.01886 -10.60993 -10.56003 -10.14444 -9.35486 -8.15975 -6.28740 1.13355 1.44124 1.44984 1.55492 1.91622 2.14154 2.43670 3.16079 3.21273 3.87341 4.00242 4.17907 4.27116 4.35020 4.57297 4.64127 4.70005 4.76841 5.00741 5.01731 5.17764 5.23195 5.34756 5.43223 5.51501 5.65221 5.69158 5.81427 5.87391 6.18730 6.29151 6.82253 7.10042 7.41640 7.57237 8.93163 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059194 B = 0.005697 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.908373 B = 4913.369631 C = 5228.332228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.178 4.178 3 C 0.162 3.838 4 N -0.727 5.727 5 C 0.706 3.294 6 O -0.649 6.649 7 N -0.639 5.639 8 C 0.103 3.897 9 C -0.116 4.116 10 C 0.037 3.963 11 H 0.010 0.990 12 C -0.530 4.530 13 H 0.070 0.930 14 C 0.009 3.991 15 N -0.923 5.923 16 Si 0.961 3.039 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.258 1.258 20 C 0.152 3.848 21 H 0.096 0.904 22 H 0.127 0.873 23 H 0.134 0.866 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.411 0.589 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.032 0.968 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 -15.228 -3.013 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C 0.039 3.961 4 N -0.384 5.384 5 C 0.408 3.592 6 O -0.531 6.531 7 N -0.376 5.376 8 C -0.019 4.019 9 C -0.154 4.154 10 C 0.017 3.983 11 H 0.028 0.972 12 C -0.568 4.568 13 H 0.088 0.912 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.786 3.214 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.182 1.182 20 C 0.029 3.971 21 H 0.115 0.885 22 H 0.145 0.855 23 H 0.152 0.848 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.247 0.753 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.835 -14.384 -3.662 16.784 hybrid contribution 0.781 0.875 0.221 1.194 sum -7.054 -13.509 -3.440 15.623 Atomic orbital electron populations 1.24184 0.95406 1.03350 0.96417 1.22906 0.96400 0.96905 1.03461 1.20304 0.90739 0.96884 0.88195 1.44950 1.42027 1.18584 1.32830 1.15834 0.79294 0.83363 0.80736 1.90844 1.73819 1.38560 1.49920 1.48026 1.40442 1.21350 1.27788 1.22197 1.00140 0.89650 0.89882 1.22634 0.98297 0.95645 0.98795 1.19769 0.95918 0.92780 0.89789 0.97209 1.21416 0.99087 0.92721 1.43582 0.91188 1.25921 1.00104 0.98206 0.94759 1.70121 1.33836 1.05788 1.46427 0.85504 0.79599 0.77545 0.78734 1.20408 1.21311 1.18233 1.22056 0.89342 0.87278 0.98455 0.88542 0.85467 0.84803 0.92852 0.92114 0.75266 0.90280 0.89469 0.90941 0.89278 0.92993 0.94979 0.95173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 14.32 67.78 0.97 -1.15 16 2 C -0.18 -2.92 9.63 25.64 0.25 -2.68 16 3 C 0.16 4.13 6.11 85.63 0.52 4.65 16 4 N -0.73 -21.32 5.51 -482.31 -2.66 -23.98 16 5 C 0.71 29.61 8.49 179.05 1.52 31.13 16 6 O -0.65 -33.78 16.60 -3.98 -0.07 -33.84 16 7 N -0.64 -26.76 3.33 -829.72 -2.76 -29.52 16 8 C 0.10 3.18 6.15 86.75 0.53 3.71 16 9 C -0.12 -4.15 6.40 31.80 0.20 -3.95 16 10 C 0.04 1.82 2.91 -10.16 -0.03 1.79 16 11 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 12 C -0.53 -28.39 8.52 25.60 0.22 -28.18 16 13 H 0.07 3.54 7.78 -2.91 -0.02 3.52 16 14 C 0.01 0.53 5.35 84.65 0.45 0.98 16 15 N -0.92 -55.42 12.27 21.45 0.26 -55.16 16 16 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 C 0.15 7.85 5.76 86.85 0.50 8.35 16 21 H 0.10 1.39 7.84 -2.91 -0.02 1.37 16 22 H 0.13 1.13 8.06 -2.91 -0.02 1.11 16 23 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 24 H 0.05 1.50 7.79 -2.39 -0.02 1.48 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.41 9.17 7.45 -92.71 -0.69 8.48 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 30 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 31 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.03 1.93 7.46 -2.39 -0.02 1.92 16 33 H 0.03 1.63 8.03 -2.38 -0.02 1.61 16 Total: -1.00 -71.99 281.72 2.34 -69.65 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.40 Total: 12.71 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.14 Total: 14.67 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -5.15 Total: -108.66 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.07 Total: -33.84 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.99 2.34 -69.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.416 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds