Wall clock time and date at job start Mon Mar 30 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47157 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47174 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47381 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99744 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00380 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99875 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00028 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47094 * 60.00570 * 15 13 11 17 17 H 1.48504 * 109.47038 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47455 * 300.00385 * 15 13 11 19 19 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 20 20 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 21 21 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 22 22 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 23 23 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 25 25 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 26 26 H 1.00903 * 110.99728 * 303.96073 * 7 6 5 27 27 H 1.09001 * 109.46894 * 300.00024 * 8 7 6 28 28 H 1.08997 * 109.47035 * 59.99900 * 8 7 6 29 29 H 1.09001 * 109.47096 * 299.99727 * 9 8 7 30 30 H 1.08997 * 109.47371 * 59.99932 * 9 8 7 31 31 H 1.09002 * 109.47182 * 299.99160 * 10 9 8 32 32 H 1.08997 * 109.47772 * 59.99486 * 10 9 8 33 33 H 0.96995 * 120.00279 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1909 -1.8415 1.3853 8 6 6.3838 -2.6978 1.4244 9 6 6.7658 -2.9740 2.8799 10 6 8.0086 -3.8654 2.9207 11 6 8.3853 -4.1370 4.3544 12 1 7.7972 -3.7156 5.1563 13 6 9.4805 -4.9234 4.6424 14 7 10.1968 -5.4362 3.6659 15 14 9.9477 -5.2594 6.4195 16 1 8.8234 -5.9451 7.1058 17 1 11.1540 -6.1248 6.4591 18 1 10.2376 -3.9753 7.1065 19 8 2.2872 -1.0891 0.0005 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 4.4157 1.3161 0.0011 24 1 4.5695 -2.4896 -0.5140 25 1 5.6081 -1.0440 -0.5130 26 1 5.3416 -0.9880 1.9020 27 1 6.1712 -3.6403 0.9198 28 1 7.2092 -2.1943 0.9211 29 1 6.9783 -2.0317 3.3849 30 1 5.9404 -3.4777 3.3829 31 1 7.7965 -4.8078 2.4157 32 1 8.8340 -3.3615 2.4178 33 1 10.9676 -5.9892 3.8684 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397924766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:28 Heat of formation + Delta-G solvation = 4.072658 kcal Electronic energy + Delta-G solvation = -14350.571810 eV Core-core repulsion = 11798.376253 eV Total energy + Delta-G solvation = -2552.195557 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.40000 -36.71665 -34.83158 -33.82082 -32.44393 -31.16722 -28.72833 -26.19693 -24.35906 -22.47229 -22.10234 -21.14279 -20.14803 -17.13196 -16.88570 -16.30358 -15.69544 -14.87098 -14.63357 -14.26458 -14.16685 -13.57073 -13.37589 -13.28260 -12.89616 -12.39008 -12.01932 -11.70532 -11.47261 -11.37133 -10.83870 -10.64912 -10.61713 -10.54116 -9.72854 -9.40982 -9.10735 -8.83840 -8.35300 -8.32808 -5.99877 -4.02130 1.31639 2.51841 2.57217 3.34118 3.38126 3.41042 3.90990 4.33569 4.48181 4.70006 4.88026 4.93588 5.09990 5.23546 5.27321 5.35944 5.40599 5.69870 5.72540 5.77789 5.97510 6.20619 6.24381 6.64021 6.67814 7.09171 7.16614 7.44037 7.61736 7.67110 7.81486 8.00087 8.43189 9.04761 9.61931 11.11581 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.066307 B = 0.003681 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.176893 B = 7604.820696 C = 7760.941591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.182 3.818 3 N -0.486 5.486 4 C -0.041 4.041 5 C -0.030 4.030 6 C 0.139 3.861 7 N -0.689 5.689 8 C 0.059 3.941 9 C -0.108 4.108 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.193 6.193 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.087 0.913 23 H 0.182 0.818 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.342 0.658 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.339 9.914 -9.147 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.025 4.025 3 N -0.216 5.216 4 C -0.181 4.181 5 C -0.083 4.083 6 C 0.010 3.990 7 N -0.321 5.321 8 C -0.069 4.069 9 C -0.146 4.146 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 O -0.079 6.079 20 H 0.111 0.889 21 H 0.117 0.883 22 H 0.106 0.894 23 H 0.199 0.801 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.160 0.840 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.870 9.823 -9.122 20.774 hybrid contribution 1.414 -0.230 0.717 1.602 sum -14.456 9.593 -8.405 19.278 Atomic orbital electron populations 1.20231 0.81462 1.04904 1.04695 1.26282 0.96512 0.78842 1.00842 1.70416 1.02090 1.30392 1.18711 1.23068 0.95145 0.93001 1.06849 1.23434 0.83713 0.95039 1.06148 1.20314 0.88531 0.97800 0.92401 1.60586 1.38847 1.21906 1.10730 1.22185 0.88348 0.96183 1.00156 1.21637 1.00256 1.00375 0.92291 1.19060 0.91148 0.94228 0.97062 1.21219 1.11647 1.30548 0.92475 0.92698 1.25028 0.96403 0.95871 0.97192 1.69951 1.18208 1.34095 1.31381 0.86644 0.77851 0.78226 0.85202 1.20200 1.21299 1.20252 1.84414 1.16668 1.37525 1.69343 0.88935 0.88290 0.89412 0.80094 0.89062 0.91617 0.83979 0.91082 0.95220 0.93510 0.92446 0.96513 0.96733 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.00 0.38 0.01 16 2 C 0.18 2.15 8.34 -12.95 -0.11 2.05 16 3 N -0.49 -6.50 11.29 -11.10 -0.13 -6.62 16 4 C -0.04 -0.51 11.80 -17.77 -0.21 -0.72 16 5 C -0.03 -0.38 6.90 -35.69 -0.25 -0.63 16 6 C 0.14 1.68 6.23 -4.97 -0.03 1.65 16 7 N -0.69 -10.02 6.49 -115.06 -0.75 -10.77 16 8 C 0.06 0.99 5.68 -3.83 -0.02 0.97 16 9 C -0.11 -2.21 5.41 -26.74 -0.14 -2.36 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 O -0.19 -2.61 10.78 5.34 0.06 -2.55 16 20 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.34 4.71 8.72 -39.29 -0.34 4.37 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -32.56 289.52 -6.63 -39.19 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.96 Total: -1.77 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.93 Total: -12.27 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.14 Total: -43.75 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: 0.06 Total: -2.55 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.56 -6.63 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397924766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.261 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds