Wall clock time and date at job start Mon Mar 30 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47157 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47174 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47381 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99744 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00380 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99875 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00028 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47094 * 60.00570 * 15 13 11 17 17 H 1.48504 * 109.47038 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47455 * 300.00385 * 15 13 11 19 19 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 20 20 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 21 21 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 22 22 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 23 23 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 25 25 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 26 26 H 1.00903 * 110.99728 * 303.96073 * 7 6 5 27 27 H 1.09001 * 109.46894 * 300.00024 * 8 7 6 28 28 H 1.08997 * 109.47035 * 59.99900 * 8 7 6 29 29 H 1.09001 * 109.47096 * 299.99727 * 9 8 7 30 30 H 1.08997 * 109.47371 * 59.99932 * 9 8 7 31 31 H 1.09002 * 109.47182 * 299.99160 * 10 9 8 32 32 H 1.08997 * 109.47772 * 59.99486 * 10 9 8 33 33 H 0.96995 * 120.00279 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1909 -1.8415 1.3853 8 6 6.3838 -2.6978 1.4244 9 6 6.7658 -2.9740 2.8799 10 6 8.0086 -3.8654 2.9207 11 6 8.3853 -4.1370 4.3544 12 1 7.7972 -3.7156 5.1563 13 6 9.4805 -4.9234 4.6424 14 7 10.1968 -5.4362 3.6659 15 14 9.9477 -5.2594 6.4195 16 1 8.8234 -5.9451 7.1058 17 1 11.1540 -6.1248 6.4591 18 1 10.2376 -3.9753 7.1065 19 8 2.2872 -1.0891 0.0005 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 4.4157 1.3161 0.0011 24 1 4.5695 -2.4896 -0.5140 25 1 5.6081 -1.0440 -0.5130 26 1 5.3416 -0.9880 1.9020 27 1 6.1712 -3.6403 0.9198 28 1 7.2092 -2.1943 0.9211 29 1 6.9783 -2.0317 3.3849 30 1 5.9404 -3.4777 3.3829 31 1 7.7965 -4.8078 2.4157 32 1 8.8340 -3.3615 2.4178 33 1 10.9676 -5.9892 3.8684 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397924766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:28 Heat of formation + Delta-G solvation = -20.307359 kcal Electronic energy + Delta-G solvation = -14351.629007 eV Core-core repulsion = 11798.376253 eV Total energy + Delta-G solvation = -2553.252754 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.32061 -37.99062 -35.77275 -35.64597 -33.83026 -32.50111 -29.91501 -27.75922 -25.62190 -23.98789 -23.12706 -22.20334 -21.75399 -18.52743 -18.02146 -17.81014 -16.88412 -16.55842 -15.97415 -15.49665 -15.25903 -14.78186 -14.48165 -14.24950 -13.85367 -13.59256 -13.43284 -13.20528 -13.04874 -12.66394 -12.48038 -12.31326 -12.30363 -11.61655 -11.53531 -11.39948 -11.15385 -10.54697 -9.80777 -9.45062 -8.20293 -6.31192 0.39630 1.40278 1.43254 1.51214 1.62482 1.70691 2.41179 3.12868 3.13065 3.26179 3.79028 4.00868 4.09773 4.23566 4.36642 4.41862 4.63882 4.66001 4.69049 4.71295 4.95880 5.02832 5.04265 5.08152 5.23290 5.38546 5.51298 5.74883 5.85688 5.89801 6.26278 6.31585 6.70688 6.85634 7.38018 8.91375 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.066307 B = 0.003681 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.176893 B = 7604.820696 C = 7760.941591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.183 3.817 3 N -0.516 5.516 4 C -0.043 4.043 5 C -0.047 4.047 6 C 0.144 3.856 7 N -0.695 5.695 8 C 0.073 3.927 9 C -0.094 4.094 10 C 0.026 3.974 11 C -0.546 4.546 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.267 1.267 19 O -0.211 6.211 20 H 0.106 0.894 21 H 0.113 0.887 22 H 0.105 0.895 23 H 0.202 0.798 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.347 0.653 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.049 0.951 31 H -0.007 1.007 32 H -0.005 1.005 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 10.606 -8.686 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.023 4.023 3 N -0.246 5.246 4 C -0.181 4.181 5 C -0.100 4.100 6 C 0.015 3.985 7 N -0.328 5.328 8 C -0.055 4.055 9 C -0.132 4.132 10 C -0.012 4.012 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.192 1.192 19 O -0.098 6.098 20 H 0.125 0.875 21 H 0.132 0.868 22 H 0.124 0.876 23 H 0.218 0.782 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.166 0.834 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.011 0.989 32 H 0.013 0.987 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.803 10.534 -8.666 21.642 hybrid contribution 1.635 -0.415 0.533 1.769 sum -15.168 10.119 -8.133 19.965 Atomic orbital electron populations 1.20532 0.78257 1.06504 1.06047 1.27332 0.98134 0.78128 0.98731 1.70456 1.02702 1.31213 1.20269 1.23451 0.95633 0.93236 1.05824 1.23507 0.83750 0.95281 1.07510 1.20326 0.89027 0.98201 0.90948 1.60457 1.37474 1.22178 1.12687 1.21864 0.89598 0.96810 0.97232 1.21385 0.97451 0.99226 0.95180 1.18962 0.92825 0.93946 0.95469 1.21690 1.12058 1.30822 0.93841 0.92366 1.25975 0.96307 0.95520 1.02022 1.70078 1.18727 1.34725 1.33810 0.85510 0.77730 0.78467 0.79408 1.19269 1.20739 1.19151 1.84415 1.17180 1.38441 1.69789 0.87517 0.86850 0.87613 0.78162 0.88997 0.89358 0.83413 0.91389 0.94432 0.93001 0.93200 0.98878 0.98685 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.18 4.09 8.34 88.34 0.74 4.82 16 3 N -0.52 -13.18 11.29 -303.83 -3.43 -16.61 16 4 C -0.04 -1.01 11.80 83.39 0.98 -0.02 16 5 C -0.05 -1.16 6.90 24.79 0.17 -0.99 16 6 C 0.14 3.26 6.23 85.56 0.53 3.80 16 7 N -0.70 -19.34 6.49 -517.93 -3.36 -22.70 16 8 C 0.07 2.39 5.68 86.30 0.49 2.88 16 9 C -0.09 -3.87 5.41 30.59 0.17 -3.71 16 10 C 0.03 1.35 4.97 29.85 0.15 1.50 16 11 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 14 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 15 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 O -0.21 -5.49 10.78 -3.79 -0.04 -5.53 16 20 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.35 9.06 8.72 -89.69 -0.78 8.27 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -69.62 289.52 0.46 -69.17 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.31 Total: 8.25 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.67 Total: -22.40 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -6.51 Total: -96.04 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.04 Total: -5.53 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -69.62 0.46 -69.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397924766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.858 kcal (2) G-P(sol) polarization free energy of solvation -69.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds