Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46744 * 2 1 4 4 H 1.09008 * 109.46780 * 174.08692 * 3 2 1 5 5 C 1.50698 * 109.47104 * 54.09504 * 3 2 1 6 6 H 1.07998 * 119.99846 * 239.99986 * 5 3 2 7 7 C 1.37879 * 120.00143 * 59.99014 * 5 3 2 8 8 N 1.31516 * 120.00258 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00003 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47157 * 90.00396 * 9 7 5 11 11 H 1.48495 * 109.47391 * 210.00440 * 9 7 5 12 12 H 1.48502 * 109.47144 * 330.00725 * 9 7 5 13 13 N 1.46895 * 109.47656 * 294.08909 * 3 2 1 14 14 C 1.46895 * 111.00039 * 275.78893 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.20310 * 14 13 3 16 16 C 1.34328 * 126.44354 * 89.70759 * 15 14 13 17 17 N 1.34479 * 107.66858 * 179.87878 * 16 15 14 18 18 C 1.30254 * 108.70191 * 0.39118 * 17 16 15 19 19 C 1.50696 * 125.62363 * 179.77649 * 18 17 16 20 20 O 1.33973 * 108.76151 * 359.75946 * 18 17 16 21 21 H 1.08999 * 109.47598 * 58.55435 * 1 2 3 22 22 H 1.09001 * 109.47002 * 298.55249 * 1 2 3 23 23 H 1.09002 * 109.47305 * 178.55373 * 1 2 3 24 24 H 1.08996 * 109.47248 * 120.00120 * 2 1 3 25 25 H 1.08999 * 109.46926 * 240.00757 * 2 1 3 26 26 H 0.96998 * 120.00277 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99551 * 39.73645 * 13 3 2 28 28 H 1.09002 * 109.47243 * 296.20082 * 14 13 3 29 29 H 1.09001 * 109.47481 * 56.20051 * 14 13 3 30 30 H 1.08001 * 126.16531 * 0.02562 * 16 15 14 31 31 H 1.09001 * 109.47255 * 269.98174 * 19 18 17 32 32 H 1.09000 * 109.47004 * 29.98032 * 19 18 17 33 33 H 1.09000 * 109.47113 * 149.97692 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1248 1.4444 0.1059 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0669 0.9619 7 6 1.6308 1.7665 2.4449 8 7 2.3702 0.7035 2.6751 9 14 0.8652 2.6982 3.8714 10 1 -0.4772 2.1358 4.1664 11 1 1.7313 2.5667 5.0705 12 1 0.7326 4.1328 3.5115 13 7 1.6702 2.0927 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1911 2.3985 -3.6180 16 6 2.4738 3.6319 -4.0688 17 7 1.8769 3.7759 -5.2652 18 6 1.2376 2.6768 -5.5480 19 6 0.4324 2.4263 -6.7969 20 8 1.4142 1.8056 -4.5458 21 1 -0.3634 0.5361 -0.8767 22 1 -0.3633 0.4912 0.9027 23 1 -0.3634 -1.0273 -0.0259 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 2.5176 0.4030 3.5855 27 1 0.7403 1.8249 -1.5501 28 1 3.6180 2.2150 -2.0418 29 1 2.7440 0.7139 -2.4302 30 1 3.0745 4.3733 -3.5629 31 1 -0.6003 2.7332 -6.6311 32 1 0.8538 3.0003 -7.6222 33 1 0.4612 1.3644 -7.0409 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397936052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = 14.620947 kcal Electronic energy + Delta-G solvation = -15285.075730 eV Core-core repulsion = 12733.337581 eV Total energy + Delta-G solvation = -2551.738149 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.07563 -36.72930 -34.52327 -33.30412 -31.80732 -30.62416 -28.16427 -26.13933 -23.96591 -23.23783 -22.00680 -20.73478 -19.37912 -16.90125 -16.55182 -16.10474 -14.97288 -14.83651 -14.24556 -13.88695 -13.42993 -13.18299 -12.90150 -12.75577 -12.56246 -12.21214 -12.07778 -11.72295 -11.05488 -10.96201 -10.77221 -10.57603 -10.37754 -10.02947 -9.93751 -9.62101 -9.05865 -8.45660 -8.38964 -7.37534 -6.01746 -4.03551 1.66535 2.84502 2.91615 3.30937 3.38013 3.42761 4.20938 4.42154 4.97688 5.22958 5.27765 5.30137 5.30899 5.39541 5.54594 5.74701 5.88947 6.13653 6.27803 6.30144 6.35721 6.51081 6.56779 6.84563 7.14897 7.19760 7.44650 7.62208 7.82617 7.93500 8.18301 8.38555 8.51239 9.01617 9.60223 11.05433 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045077 B = 0.005994 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.003743 B = 4670.145341 C = 4856.911823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.141 3.859 15 C -0.027 4.027 16 C -0.033 4.033 17 N -0.486 5.486 18 C 0.170 3.830 19 C -0.052 4.052 20 O -0.205 6.205 21 H 0.028 0.972 22 H 0.067 0.933 23 H 0.023 0.977 24 H 0.095 0.905 25 H 0.011 0.989 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.184 0.816 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.812 0.155 -13.032 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.529 4.529 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.310 5.310 14 C 0.011 3.989 15 C -0.080 4.080 16 C -0.172 4.172 17 N -0.216 5.216 18 C -0.037 4.037 19 C -0.110 4.110 20 O -0.091 6.091 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.113 0.887 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.118 0.882 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.450 1.127 -13.093 13.221 hybrid contribution -0.573 -1.064 1.159 1.674 sum -2.023 0.063 -11.935 12.105 Atomic orbital electron populations 1.21566 0.97581 0.98112 1.01274 1.22125 0.95181 1.00964 1.00360 1.19270 0.96395 0.88778 0.84790 0.94523 1.21015 1.30671 1.11629 0.89578 0.91937 1.24901 0.95484 0.95170 0.98705 1.69877 1.39070 1.24134 1.20451 0.86541 0.78959 0.80382 0.81808 1.20836 1.21375 1.19867 1.61052 1.03862 1.63230 1.02861 1.20436 0.97534 0.97533 0.83394 1.23794 0.96766 0.94517 0.92924 1.23004 1.04588 0.96745 0.92872 1.70389 1.11643 1.24180 1.15424 1.26160 1.00670 0.84404 0.92456 1.20166 0.98139 1.03856 0.88826 1.84383 1.54799 1.43374 1.26593 0.95267 0.91428 0.95779 0.88704 0.97015 0.93037 0.85107 0.88216 0.94222 0.79931 0.89232 0.88483 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.39 37.16 0.35 -2.37 16 2 C -0.15 -3.37 5.50 -26.73 -0.15 -3.51 16 3 C 0.21 5.16 2.33 -68.87 -0.16 5.00 16 4 H 0.04 0.96 7.86 -51.92 -0.41 0.55 16 5 C -0.49 -13.01 7.35 -34.44 -0.25 -13.27 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -24.76 11.39 55.43 0.63 -24.12 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -14.20 6.24 -109.22 -0.68 -14.88 16 14 C 0.14 2.50 6.03 -4.98 -0.03 2.47 16 15 C -0.03 -0.46 6.86 -35.69 -0.24 -0.70 16 16 C -0.03 -0.55 11.80 -17.77 -0.21 -0.76 16 17 N -0.49 -7.98 11.29 -11.10 -0.13 -8.10 16 18 C 0.17 2.47 8.34 -12.95 -0.11 2.36 16 19 C -0.05 -0.46 10.51 36.00 0.38 -0.09 16 20 O -0.20 -3.38 10.78 5.33 0.06 -3.32 16 21 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 22 H 0.07 1.57 7.05 -51.93 -0.37 1.21 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 2.43 6.25 -51.93 -0.32 2.11 16 25 H 0.01 0.24 7.24 -51.93 -0.38 -0.14 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.33 6.87 6.55 -39.29 -0.26 6.62 16 28 H 0.10 1.68 8.13 -51.93 -0.42 1.25 16 29 H 0.04 0.70 7.23 -51.93 -0.38 0.33 16 30 H 0.18 2.66 8.06 -52.49 -0.42 2.24 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -29.16 277.37 -6.00 -35.16 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.52 Total: 4.43 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.52 Total: -9.39 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.18 Total: -47.11 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.06 Total: -3.32 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.16 -6.00 -35.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397936052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.785 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds