Wall clock time and date at job start Mon Mar 30 2020 02:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46744 * 2 1 4 4 H 1.09008 * 109.46780 * 174.08692 * 3 2 1 5 5 C 1.50698 * 109.47104 * 54.09504 * 3 2 1 6 6 H 1.07998 * 119.99846 * 239.99986 * 5 3 2 7 7 C 1.37879 * 120.00143 * 59.99014 * 5 3 2 8 8 N 1.31516 * 120.00258 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00003 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47157 * 90.00396 * 9 7 5 11 11 H 1.48495 * 109.47391 * 210.00440 * 9 7 5 12 12 H 1.48502 * 109.47144 * 330.00725 * 9 7 5 13 13 N 1.46895 * 109.47656 * 294.08909 * 3 2 1 14 14 C 1.46895 * 111.00039 * 275.78893 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.20310 * 14 13 3 16 16 C 1.34328 * 126.44354 * 89.70759 * 15 14 13 17 17 N 1.34479 * 107.66858 * 179.87878 * 16 15 14 18 18 C 1.30254 * 108.70191 * 0.39118 * 17 16 15 19 19 C 1.50696 * 125.62363 * 179.77649 * 18 17 16 20 20 O 1.33973 * 108.76151 * 359.75946 * 18 17 16 21 21 H 1.08999 * 109.47598 * 58.55435 * 1 2 3 22 22 H 1.09001 * 109.47002 * 298.55249 * 1 2 3 23 23 H 1.09002 * 109.47305 * 178.55373 * 1 2 3 24 24 H 1.08996 * 109.47248 * 120.00120 * 2 1 3 25 25 H 1.08999 * 109.46926 * 240.00757 * 2 1 3 26 26 H 0.96998 * 120.00277 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99551 * 39.73645 * 13 3 2 28 28 H 1.09002 * 109.47243 * 296.20082 * 14 13 3 29 29 H 1.09001 * 109.47481 * 56.20051 * 14 13 3 30 30 H 1.08001 * 126.16531 * 0.02562 * 16 15 14 31 31 H 1.09001 * 109.47255 * 269.98174 * 19 18 17 32 32 H 1.09000 * 109.47004 * 29.98032 * 19 18 17 33 33 H 1.09000 * 109.47113 * 149.97692 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1248 1.4444 0.1059 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0669 0.9619 7 6 1.6308 1.7665 2.4449 8 7 2.3702 0.7035 2.6751 9 14 0.8652 2.6982 3.8714 10 1 -0.4772 2.1358 4.1664 11 1 1.7313 2.5667 5.0705 12 1 0.7326 4.1328 3.5115 13 7 1.6702 2.0927 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1911 2.3985 -3.6180 16 6 2.4738 3.6319 -4.0688 17 7 1.8769 3.7759 -5.2652 18 6 1.2376 2.6768 -5.5480 19 6 0.4324 2.4263 -6.7969 20 8 1.4142 1.8056 -4.5458 21 1 -0.3634 0.5361 -0.8767 22 1 -0.3633 0.4912 0.9027 23 1 -0.3634 -1.0273 -0.0259 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 2.5176 0.4030 3.5855 27 1 0.7403 1.8249 -1.5501 28 1 3.6180 2.2150 -2.0418 29 1 2.7440 0.7139 -2.4302 30 1 3.0745 4.3733 -3.5629 31 1 -0.6003 2.7332 -6.6311 32 1 0.8538 3.0003 -7.6222 33 1 0.4612 1.3644 -7.0409 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397936052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:43 Heat of formation + Delta-G solvation = -6.524288 kcal Electronic energy + Delta-G solvation = -15285.992656 eV Core-core repulsion = 12733.337581 eV Total energy + Delta-G solvation = -2552.655075 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.29160 -38.48329 -35.74684 -34.97590 -33.33607 -32.08262 -29.57493 -27.87276 -25.53681 -24.95816 -23.23321 -21.96977 -21.23054 -18.46612 -17.79077 -17.68948 -16.79402 -16.53109 -15.70102 -15.21699 -14.85678 -14.65787 -14.35039 -13.89908 -13.81295 -13.71787 -13.38702 -13.24019 -12.81742 -12.61370 -12.47326 -12.27306 -11.96926 -11.78426 -11.56655 -11.45829 -11.00961 -10.43807 -9.71054 -9.06204 -8.06274 -6.14340 0.44695 1.43758 1.45996 1.55435 1.66475 1.72359 2.46490 3.18520 3.23305 3.67821 3.81375 4.12486 4.22163 4.48328 4.51374 4.56661 4.66194 4.69896 4.72151 4.74950 5.02472 5.06453 5.08311 5.29773 5.38468 5.43852 5.65663 5.72586 5.79147 6.27113 6.58124 6.67060 6.73735 6.95219 7.53020 8.99265 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045077 B = 0.005994 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.003743 B = 4670.145341 C = 4856.911823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.140 4.140 3 C 0.220 3.780 4 H 0.010 0.990 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.148 3.852 15 C -0.048 4.048 16 C -0.034 4.034 17 N -0.514 5.514 18 C 0.182 3.818 19 C -0.054 4.054 20 O -0.215 6.215 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.027 0.973 26 H 0.260 0.740 27 H 0.332 0.668 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.194 0.806 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 0.252 -14.337 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.112 3.888 4 H 0.028 0.972 5 C -0.541 4.541 6 H 0.069 0.931 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.313 5.313 14 C 0.019 3.981 15 C -0.101 4.101 16 C -0.172 4.172 17 N -0.244 5.244 18 C -0.025 4.025 19 C -0.111 4.111 20 O -0.103 6.103 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.150 0.850 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.211 0.789 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.430 1.234 -14.411 14.667 hybrid contribution -0.275 -1.080 1.436 1.818 sum -2.706 0.154 -12.975 13.255 Atomic orbital electron populations 1.21454 0.96152 0.99374 1.00705 1.21978 0.96395 0.99941 0.99670 1.19024 0.94522 0.89474 0.85732 0.97180 1.21214 1.30566 1.11466 0.90804 0.93099 1.25537 0.95896 0.95873 1.00809 1.69992 1.39949 1.25140 1.20782 0.85663 0.78313 0.79173 0.79112 1.20285 1.21158 1.19813 1.60902 1.04572 1.63063 1.02810 1.20317 0.96926 0.97766 0.83129 1.23496 0.98488 0.94903 0.93170 1.23269 1.04161 0.96734 0.93042 1.70445 1.13064 1.25318 1.15615 1.27399 0.99020 0.83291 0.92767 1.20540 0.98209 1.05744 0.86575 1.84382 1.54936 1.43976 1.27036 0.93786 0.93826 0.93704 0.91562 0.95403 0.93102 0.84992 0.87706 0.94045 0.78893 0.87374 0.86767 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.39 71.98 0.68 -4.28 16 2 C -0.14 -6.40 5.50 30.60 0.17 -6.24 16 3 C 0.22 10.69 2.33 44.17 0.10 10.79 16 4 H 0.01 0.55 7.86 -2.38 -0.02 0.53 16 5 C -0.50 -26.87 7.35 25.60 0.19 -26.68 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.02 0.94 5.22 84.65 0.44 1.38 16 8 N -0.92 -51.30 11.39 21.45 0.24 -51.06 16 9 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 N -0.68 -28.39 6.24 -499.46 -3.12 -31.51 16 14 C 0.15 5.20 6.03 85.56 0.52 5.72 16 15 C -0.05 -1.59 6.86 24.79 0.17 -1.42 16 16 C -0.03 -1.08 11.80 83.39 0.98 -0.10 16 17 N -0.51 -16.10 11.29 -303.83 -3.43 -19.53 16 18 C 0.18 4.90 8.34 88.34 0.74 5.64 16 19 C -0.05 -0.77 10.51 71.23 0.75 -0.02 16 20 O -0.22 -6.77 10.78 -3.83 -0.04 -6.82 16 21 H 0.04 1.66 6.42 -2.39 -0.02 1.65 16 22 H 0.04 2.00 7.05 -2.39 -0.02 1.98 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 3.43 6.25 -2.39 -0.01 3.42 16 25 H 0.03 1.15 7.24 -2.39 -0.02 1.13 16 26 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.33 13.55 6.55 -89.69 -0.59 12.96 16 28 H 0.10 3.53 8.13 -2.39 -0.02 3.51 16 29 H 0.04 1.44 7.23 -2.39 -0.02 1.42 16 30 H 0.19 5.51 8.06 -2.91 -0.02 5.49 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -61.89 277.37 0.93 -60.95 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.52 Total: 17.85 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.73 Total: -15.20 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -6.31 Total: -102.10 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.04 Total: -6.82 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.89 0.93 -60.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397936052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.429 kcal (2) G-P(sol) polarization free energy of solvation -61.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds