Wall clock time and date at job start Mon Mar 30 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.09006 * 109.47263 * 185.16204 * 3 2 1 5 5 C 1.50700 * 109.47379 * 305.16367 * 3 2 1 6 6 H 1.08001 * 120.00069 * 119.99916 * 5 3 2 7 7 C 1.37882 * 119.99825 * 300.00157 * 5 3 2 8 8 N 1.31516 * 119.99896 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99770 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47419 * 89.99969 * 9 7 5 11 11 H 1.48502 * 109.46829 * 209.99769 * 9 7 5 12 12 H 1.48493 * 109.47210 * 329.99202 * 9 7 5 13 13 N 1.46896 * 109.47132 * 65.16440 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89597 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.34328 * 126.44248 * 90.00015 * 15 14 13 17 17 N 1.34471 * 107.67109 * 179.97438 * 16 15 14 18 18 C 1.30260 * 108.70192 * 0.02562 * 17 16 15 19 19 C 1.50700 * 125.62169 * 179.97438 * 18 17 16 20 20 O 1.33970 * 108.75652 * 359.73374 * 18 17 16 21 21 H 1.09000 * 109.47219 * 294.84548 * 1 2 3 22 22 H 1.08999 * 109.47213 * 174.84609 * 1 2 3 23 23 H 1.08994 * 109.47141 * 54.84571 * 1 2 3 24 24 H 1.09002 * 109.47741 * 120.00348 * 2 1 3 25 25 H 1.09000 * 109.47500 * 240.00462 * 2 1 3 26 26 H 0.96999 * 119.99876 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99920 * 321.94239 * 13 3 2 28 28 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 29 29 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 30 30 H 1.08004 * 126.16701 * 0.02562 * 16 15 14 31 31 H 1.09004 * 109.46770 * 90.02537 * 19 18 17 32 32 H 1.09003 * 109.46874 * 210.02992 * 19 18 17 33 33 H 1.09003 * 109.47291 * 330.02744 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1889 -1.1615 6 1 0.8268 3.0629 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4031 0.6921 -2.6675 9 14 0.9129 2.6817 -3.8909 10 1 1.8551 3.7359 -4.3450 11 1 0.6534 1.7361 -5.0061 12 1 -0.3644 3.3087 -3.4663 13 7 1.6548 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2832 2.6252 3.5443 16 6 1.4950 2.2153 4.5518 17 7 1.4306 3.2128 5.4514 18 6 2.1511 4.2095 5.0222 19 6 2.3448 5.5233 5.7346 20 8 2.6958 3.8721 3.8456 21 1 -0.3634 0.4318 0.9325 22 1 -0.3633 -1.0235 -0.0923 23 1 -0.3633 0.5917 -0.8402 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 2.5611 0.3873 -3.5748 27 1 0.7321 1.8104 1.5467 28 1 2.6481 0.7729 2.5493 29 1 3.6323 2.1359 1.9648 30 1 1.0025 1.2570 4.6264 31 1 3.2122 5.4560 6.3913 32 1 2.5045 6.3140 5.0014 33 1 1.4579 5.7501 6.3262 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397936054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:45 Heat of formation + Delta-G solvation = 14.673369 kcal Electronic energy + Delta-G solvation = -15258.271283 eV Core-core repulsion = 12706.535407 eV Total energy + Delta-G solvation = -2551.735876 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.04723 -36.73401 -34.48978 -33.31672 -31.79005 -30.63161 -28.16058 -26.11835 -24.02924 -23.24865 -21.91777 -20.73417 -19.39938 -16.93144 -16.52375 -16.07017 -14.93176 -14.82131 -14.20819 -13.87953 -13.33640 -13.21670 -12.99619 -12.77025 -12.55983 -12.48395 -11.91328 -11.62574 -11.04809 -10.94419 -10.81353 -10.56352 -10.34627 -10.06364 -9.87541 -9.63304 -9.08747 -8.45466 -8.38554 -7.38535 -6.01964 -4.03652 1.69531 2.87013 2.91780 3.31178 3.37797 3.41883 4.22452 4.41863 4.97830 5.19817 5.28338 5.29963 5.30707 5.49693 5.55116 5.67276 5.88011 6.08349 6.29124 6.30548 6.36979 6.51078 6.54121 6.82506 7.15431 7.18828 7.46417 7.62023 7.82606 7.93965 8.18478 8.40198 8.51084 9.01509 9.60020 11.05092 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.038887 B = 0.006213 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.853200 B = 4505.661505 C = 4883.179008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.136 3.864 15 C -0.011 4.011 16 C -0.054 4.054 17 N -0.486 5.486 18 C 0.170 3.830 19 C -0.053 4.053 20 O -0.193 6.193 21 H 0.027 0.973 22 H 0.025 0.975 23 H 0.070 0.930 24 H 0.012 0.988 25 H 0.095 0.905 26 H 0.260 0.740 27 H 0.332 0.668 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.179 0.821 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 3.417 11.845 12.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.312 5.312 14 C 0.006 3.994 15 C -0.065 4.065 16 C -0.194 4.194 17 N -0.217 5.217 18 C -0.037 4.037 19 C -0.110 4.110 20 O -0.079 6.079 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.030 0.970 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.196 0.804 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.229 3.965 12.040 12.678 hybrid contribution -0.254 -0.678 -1.267 1.459 sum -0.025 3.287 10.773 11.263 Atomic orbital electron populations 1.21607 0.97548 0.98847 1.00872 1.22130 0.95180 1.00841 1.00469 1.19282 0.96232 0.88733 0.84882 0.94644 1.21030 1.30736 1.11574 0.89535 0.91961 1.24905 0.95496 0.95148 0.98733 1.69874 1.38919 1.23927 1.20813 0.86539 0.79618 0.79521 0.81993 1.20774 1.21397 1.19924 1.60833 1.03595 1.63713 1.03072 1.20359 0.98759 0.93943 0.86347 1.23778 0.99916 0.83384 0.99410 1.22978 1.03620 1.00586 0.92174 1.70351 1.20534 1.00608 1.30168 1.26170 0.94852 0.98625 0.84038 1.20168 1.04289 0.87488 0.99055 1.84418 1.58213 1.30060 1.35213 0.95388 0.95603 0.91129 0.96960 0.88651 0.93031 0.84995 0.92478 0.89616 0.80376 0.89403 0.89478 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.40 37.16 0.35 -2.37 16 2 C -0.15 -3.30 5.51 -26.73 -0.15 -3.45 16 3 C 0.22 5.18 2.33 -68.87 -0.16 5.01 16 4 H 0.04 0.93 7.70 -51.93 -0.40 0.53 16 5 C -0.49 -13.06 7.25 -34.44 -0.25 -13.31 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.56 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -24.77 11.38 55.43 0.63 -24.14 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 N -0.68 -14.22 6.19 -109.22 -0.68 -14.90 16 14 C 0.14 2.41 6.06 -4.98 -0.03 2.38 16 15 C -0.01 -0.18 6.94 -35.69 -0.25 -0.43 16 16 C -0.05 -0.88 11.80 -17.78 -0.21 -1.09 16 17 N -0.49 -7.97 11.29 -11.10 -0.13 -8.09 16 18 C 0.17 2.53 8.34 -12.94 -0.11 2.43 16 19 C -0.05 -0.49 10.51 36.01 0.38 -0.11 16 20 O -0.19 -3.33 10.78 5.36 0.06 -3.27 16 21 H 0.03 0.52 6.63 -51.93 -0.34 0.17 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 1.62 6.85 -51.93 -0.36 1.26 16 24 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 25 H 0.10 2.42 6.23 -51.93 -0.32 2.10 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.33 6.66 6.69 -39.29 -0.26 6.39 16 28 H 0.06 0.93 7.54 -51.93 -0.39 0.53 16 29 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 30 H 0.18 2.42 8.06 -52.48 -0.42 2.00 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -29.47 277.75 -6.01 -35.48 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.54 Total: 4.10 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.52 Total: -9.47 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.17 Total: -47.13 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.06 Total: -3.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.47 -6.01 -35.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397936054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.150 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds