Wall clock time and date at job start Mon Mar 30 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.09006 * 109.47263 * 185.16204 * 3 2 1 5 5 C 1.50700 * 109.47379 * 305.16367 * 3 2 1 6 6 H 1.08001 * 120.00069 * 119.99916 * 5 3 2 7 7 C 1.37882 * 119.99825 * 300.00157 * 5 3 2 8 8 N 1.31516 * 119.99896 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99770 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47419 * 89.99969 * 9 7 5 11 11 H 1.48502 * 109.46829 * 209.99769 * 9 7 5 12 12 H 1.48493 * 109.47210 * 329.99202 * 9 7 5 13 13 N 1.46896 * 109.47132 * 65.16440 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89597 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.34328 * 126.44248 * 90.00015 * 15 14 13 17 17 N 1.34471 * 107.67109 * 179.97438 * 16 15 14 18 18 C 1.30260 * 108.70192 * 0.02562 * 17 16 15 19 19 C 1.50700 * 125.62169 * 179.97438 * 18 17 16 20 20 O 1.33970 * 108.75652 * 359.73374 * 18 17 16 21 21 H 1.09000 * 109.47219 * 294.84548 * 1 2 3 22 22 H 1.08999 * 109.47213 * 174.84609 * 1 2 3 23 23 H 1.08994 * 109.47141 * 54.84571 * 1 2 3 24 24 H 1.09002 * 109.47741 * 120.00348 * 2 1 3 25 25 H 1.09000 * 109.47500 * 240.00462 * 2 1 3 26 26 H 0.96999 * 119.99876 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99920 * 321.94239 * 13 3 2 28 28 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 29 29 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 30 30 H 1.08004 * 126.16701 * 0.02562 * 16 15 14 31 31 H 1.09004 * 109.46770 * 90.02537 * 19 18 17 32 32 H 1.09003 * 109.46874 * 210.02992 * 19 18 17 33 33 H 1.09003 * 109.47291 * 330.02744 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1889 -1.1615 6 1 0.8268 3.0629 -0.9838 7 6 1.6610 1.7560 -2.4511 8 7 2.4031 0.6921 -2.6675 9 14 0.9129 2.6817 -3.8909 10 1 1.8551 3.7359 -4.3450 11 1 0.6534 1.7361 -5.0061 12 1 -0.3644 3.3087 -3.4663 13 7 1.6548 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2832 2.6252 3.5443 16 6 1.4950 2.2153 4.5518 17 7 1.4306 3.2128 5.4514 18 6 2.1511 4.2095 5.0222 19 6 2.3448 5.5233 5.7346 20 8 2.6958 3.8721 3.8456 21 1 -0.3634 0.4318 0.9325 22 1 -0.3633 -1.0235 -0.0923 23 1 -0.3633 0.5917 -0.8402 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 2.5611 0.3873 -3.5748 27 1 0.7321 1.8104 1.5467 28 1 2.6481 0.7729 2.5493 29 1 3.6323 2.1359 1.9648 30 1 1.0025 1.2570 4.6264 31 1 3.2122 5.4560 6.3913 32 1 2.5045 6.3140 5.0014 33 1 1.4579 5.7501 6.3262 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397936054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:45 Heat of formation + Delta-G solvation = -6.857607 kcal Electronic energy + Delta-G solvation = -15259.204936 eV Core-core repulsion = 12706.535407 eV Total energy + Delta-G solvation = -2552.669529 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.26996 -38.47125 -35.72109 -34.98599 -33.32811 -32.07313 -29.56146 -27.85469 -25.55873 -24.96544 -23.15522 -21.96981 -21.23587 -18.49185 -17.78525 -17.68331 -16.77331 -16.42552 -15.67320 -15.18290 -14.89399 -14.63641 -14.29340 -14.16824 -13.85784 -13.65729 -13.37769 -13.07800 -12.82222 -12.64860 -12.44374 -12.26982 -11.94431 -11.79090 -11.51382 -11.40496 -11.02478 -10.43612 -9.69513 -9.04986 -8.06656 -6.14749 0.46871 1.42833 1.44783 1.54036 1.67526 1.76353 2.45674 3.19608 3.22495 3.62286 3.96447 4.07584 4.17512 4.47511 4.55199 4.60080 4.66533 4.68734 4.70842 4.76460 5.04735 5.09394 5.10864 5.32507 5.41421 5.43560 5.71293 5.74765 5.80375 6.28896 6.59925 6.70871 6.76227 6.95198 7.52550 8.98487 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.038887 B = 0.006213 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.853200 B = 4505.661505 C = 4883.179008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.503 4.503 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.688 5.688 14 C 0.143 3.857 15 C -0.038 4.038 16 C -0.046 4.046 17 N -0.512 5.512 18 C 0.178 3.822 19 C -0.054 4.054 20 O -0.213 6.213 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.260 0.740 27 H 0.337 0.663 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.200 0.800 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 3.937 13.074 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.541 4.541 6 H 0.067 0.933 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.321 5.321 14 C 0.014 3.986 15 C -0.091 4.091 16 C -0.184 4.184 17 N -0.242 5.242 18 C -0.029 4.029 19 C -0.111 4.111 20 O -0.100 6.100 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.217 0.783 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.444 4.483 13.287 14.030 hybrid contribution -0.021 -0.778 -1.540 1.725 sum -0.465 3.706 11.747 12.327 Atomic orbital electron populations 1.21500 0.96032 0.99737 1.00827 1.21971 0.96466 0.99507 0.99991 1.19020 0.94121 0.89698 0.85765 0.97714 1.21241 1.30610 1.11391 0.90895 0.93294 1.25540 0.95900 0.95857 1.00867 1.69991 1.39766 1.24903 1.21144 0.85675 0.78887 0.78422 0.79347 1.20690 1.20937 1.19605 1.60656 1.04574 1.63744 1.03079 1.20243 0.97258 0.95262 0.85857 1.23570 1.01837 0.83939 0.99797 1.23345 1.02419 1.01236 0.91420 1.70420 1.21838 1.01297 1.30669 1.27380 0.92777 0.99744 0.82974 1.20523 1.06091 0.85024 0.99458 1.84412 1.58937 1.30290 1.36405 0.93275 0.93709 0.93763 0.94741 0.91714 0.93096 0.84393 0.90588 0.90723 0.78292 0.86974 0.88055 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.40 71.98 0.68 -4.29 16 2 C -0.14 -6.23 5.51 30.59 0.17 -6.06 16 3 C 0.22 10.75 2.33 44.17 0.10 10.85 16 4 H 0.00 0.27 7.70 -2.38 -0.02 0.25 16 5 C -0.50 -27.12 7.25 25.60 0.19 -26.93 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.92 5.28 84.66 0.45 1.36 16 8 N -0.92 -51.42 11.38 21.45 0.24 -51.18 16 9 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.69 -28.58 6.19 -499.47 -3.09 -31.67 16 14 C 0.14 5.02 6.06 85.56 0.52 5.54 16 15 C -0.04 -1.27 6.94 24.79 0.17 -1.10 16 16 C -0.05 -1.39 11.80 83.39 0.98 -0.41 16 17 N -0.51 -15.83 11.29 -303.82 -3.43 -19.26 16 18 C 0.18 4.97 8.34 88.34 0.74 5.71 16 19 C -0.05 -0.84 10.51 71.24 0.75 -0.10 16 20 O -0.21 -7.16 10.78 -3.73 -0.04 -7.20 16 21 H 0.05 1.73 6.63 -2.39 -0.02 1.72 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 2.00 6.85 -2.39 -0.02 1.98 16 24 H 0.03 1.35 7.50 -2.39 -0.02 1.33 16 25 H 0.06 3.31 6.23 -2.39 -0.01 3.30 16 26 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 27 H 0.34 13.17 6.69 -89.69 -0.60 12.57 16 28 H 0.08 2.36 7.54 -2.39 -0.02 2.34 16 29 H 0.07 2.74 7.93 -2.38 -0.02 2.72 16 30 H 0.20 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -63.13 277.75 0.95 -62.18 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.51 Total: 17.01 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.74 Total: -15.42 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -6.28 Total: -102.11 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.04 Total: -7.20 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -63.13 0.95 -62.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397936054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.318 kcal (2) G-P(sol) polarization free energy of solvation -63.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds