Wall clock time and date at job start Mon Mar 30 2020 03:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46949 * 2 1 4 4 C 1.50702 * 109.46715 * 119.99406 * 2 1 3 5 5 H 1.08003 * 119.99622 * 120.00724 * 4 2 1 6 6 C 1.37873 * 120.00250 * 299.99979 * 4 2 1 7 7 N 1.31513 * 120.00139 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99847 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46973 * 60.00404 * 8 6 4 10 10 H 1.48498 * 109.46942 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47164 * 300.00076 * 8 6 4 12 12 N 1.46499 * 109.47110 * 239.99802 * 2 1 3 13 13 C 1.34771 * 120.00135 * 85.00178 * 12 2 1 14 14 O 1.21616 * 120.00177 * 359.97438 * 13 12 2 15 15 C 1.47100 * 119.99952 * 179.97438 * 13 12 2 16 16 C 1.31934 * 118.68798 * 179.97438 * 15 13 12 17 17 C 1.50181 * 122.99502 * 180.33449 * 16 15 13 18 18 N 1.46754 * 110.38332 * 343.07951 * 17 16 15 19 19 C 1.47210 * 110.33254 * 50.91764 * 18 17 16 20 20 C 1.50343 * 118.68951 * 0.02562 * 15 13 12 21 21 H 1.08997 * 109.47492 * 300.00266 * 1 2 3 22 22 H 1.09002 * 109.46605 * 60.00618 * 1 2 3 23 23 H 1.09002 * 109.46583 * 180.02562 * 1 2 3 24 24 H 0.96997 * 120.00060 * 179.97438 * 7 6 4 25 25 H 0.97002 * 119.99815 * 264.99458 * 12 2 1 26 26 H 1.08000 * 118.50027 * 0.35323 * 16 15 13 27 27 H 1.09003 * 109.34209 * 103.17185 * 17 16 15 28 28 H 1.08996 * 109.33769 * 222.85672 * 17 16 15 29 29 H 1.00893 * 110.80911 * 287.56683 * 18 17 16 30 30 H 1.09002 * 109.62572 * 171.06424 * 19 18 17 31 31 H 1.09001 * 109.62524 * 50.68831 * 19 18 17 32 32 H 1.09000 * 109.43323 * 43.37242 * 20 15 13 33 33 H 1.08996 * 109.39440 * 283.48513 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.8074 -1.1187 4.0079 10 1 1.8268 -0.4196 5.2205 11 1 1.8279 -2.5195 4.0084 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8575 1.1615 -2.4119 15 6 2.6380 -0.7118 -3.5580 16 6 2.7536 -0.0288 -4.6809 17 6 3.2370 -0.6408 -5.9643 18 7 3.9160 -1.9146 -5.6992 19 6 3.0714 -2.7793 -4.8589 20 6 2.9869 -2.1707 -3.4571 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 0.7081 1.1611 3.4843 25 1 2.2491 -1.6318 -1.1525 26 1 2.4886 1.0182 -4.6768 27 1 2.3864 -0.8191 -6.6222 28 1 3.9326 0.0430 -6.4507 29 1 4.8151 -1.7587 -5.2687 30 1 3.5112 -3.7749 -4.8000 31 1 2.0723 -2.8453 -5.2898 32 1 2.2188 -2.6883 -2.8825 33 1 3.9490 -2.2789 -2.9565 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403578006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:00 Heat of formation + Delta-G solvation = -30.954218 kcal Electronic energy + Delta-G solvation = -15376.881471 eV Core-core repulsion = 12823.167035 eV Total energy + Delta-G solvation = -2553.714436 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.63379 -37.80315 -34.84906 -32.63355 -31.82854 -30.83568 -28.74249 -25.28509 -24.65405 -23.24155 -21.63222 -19.78112 -18.41802 -17.57316 -15.97732 -15.37716 -15.03490 -14.79199 -14.52892 -14.17792 -13.74857 -13.24624 -13.02739 -12.64091 -12.46342 -12.24657 -11.70055 -11.51163 -11.10589 -10.98291 -10.86405 -10.75914 -10.34480 -10.24783 -9.24318 -9.07719 -8.95192 -8.59512 -8.54836 -7.91311 -6.13565 -4.23319 1.67493 3.24328 3.29551 3.30724 3.90811 3.98941 4.24550 4.40546 4.77262 4.92575 5.07483 5.10922 5.18740 5.35289 5.50400 5.66438 5.74279 5.80294 5.90966 6.40368 6.69428 6.76769 6.83360 6.95444 7.13701 7.16811 7.44489 7.55357 7.68466 7.90216 8.13413 8.65389 8.76285 9.10991 9.44341 10.92451 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045643 B = 0.006294 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.307012 B = 4447.438440 C = 4826.139542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.533 3.467 14 O -0.559 6.559 15 C -0.162 4.162 16 C -0.132 4.132 17 C 0.081 3.919 18 N -0.682 5.682 19 C 0.056 3.944 20 C -0.124 4.124 21 H 0.091 0.909 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.265 0.735 25 H 0.388 0.612 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.343 0.657 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -6.736 -12.422 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.349 5.349 13 C 0.319 3.681 14 O -0.440 6.440 15 C -0.165 4.165 16 C -0.154 4.154 17 C -0.048 4.048 18 N -0.310 5.310 19 C -0.074 4.074 20 C -0.163 4.163 21 H 0.109 0.891 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.221 0.779 26 H 0.144 0.856 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.160 0.840 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.603 -6.078 -12.867 14.679 hybrid contribution 0.385 -0.366 1.938 2.010 sum 3.989 -6.443 -10.929 13.299 Atomic orbital electron populations 1.22074 0.98408 0.99109 1.00911 1.18760 0.91086 0.94009 0.80028 0.93393 1.21172 1.32576 1.13253 0.90351 0.92174 1.24892 0.94783 0.94948 0.99061 1.69893 1.35742 1.22422 1.24020 0.86493 0.79161 0.79583 0.81771 1.20172 1.21073 1.20138 1.46486 1.64391 1.13535 1.10476 1.18431 0.78909 0.86871 0.83875 1.90728 1.52110 1.15885 1.85239 1.21148 1.04075 0.96157 0.95125 1.23690 0.96033 1.01215 0.94443 1.21032 0.99384 0.90206 0.94167 1.61121 1.06297 1.14333 1.49221 1.22107 0.98475 0.96553 0.90231 1.21148 1.02831 0.92619 0.99691 0.89093 0.96678 0.95476 0.92484 0.77853 0.85616 0.89219 0.89305 0.84015 0.89976 0.90587 0.89826 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.87 2.56 -69.08 -0.18 6.70 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.13 11.32 55.43 0.63 -24.51 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.70 -15.18 5.01 -56.12 -0.28 -15.46 16 13 C 0.53 11.26 7.69 -12.67 -0.10 11.16 16 14 O -0.56 -14.03 15.69 5.26 0.08 -13.95 16 15 C -0.16 -2.55 5.85 -103.11 -0.60 -3.15 16 16 C -0.13 -1.86 9.54 -36.47 -0.35 -2.21 16 17 C 0.08 0.85 6.73 -5.31 -0.04 0.81 16 18 N -0.68 -6.90 6.98 -115.18 -0.80 -7.71 16 19 C 0.06 0.56 6.63 -3.62 -0.02 0.54 16 20 C -0.12 -1.51 5.14 -28.03 -0.14 -1.65 16 21 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.39 7.28 6.83 -40.82 -0.28 7.00 16 26 H 0.13 1.96 7.26 -52.49 -0.38 1.58 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.34 3.24 8.77 -39.30 -0.34 2.89 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.08 1.00 7.30 -51.93 -0.38 0.62 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -31.05 274.07 -7.33 -38.38 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.59 Total: 7.58 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.48 Total: -4.16 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.46 Total: -47.68 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.08 Total: -13.95 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.05 -7.33 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403578006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.430 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds