Wall clock time and date at job start Mon Mar 30 2020 03:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46949 * 2 1 4 4 C 1.50702 * 109.46715 * 119.99406 * 2 1 3 5 5 H 1.08003 * 119.99622 * 120.00724 * 4 2 1 6 6 C 1.37873 * 120.00250 * 299.99979 * 4 2 1 7 7 N 1.31513 * 120.00139 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99847 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46973 * 60.00404 * 8 6 4 10 10 H 1.48498 * 109.46942 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47164 * 300.00076 * 8 6 4 12 12 N 1.46499 * 109.47110 * 239.99802 * 2 1 3 13 13 C 1.34771 * 120.00135 * 85.00178 * 12 2 1 14 14 O 1.21616 * 120.00177 * 359.97438 * 13 12 2 15 15 C 1.47100 * 119.99952 * 179.97438 * 13 12 2 16 16 C 1.31934 * 118.68798 * 179.97438 * 15 13 12 17 17 C 1.50181 * 122.99502 * 180.33449 * 16 15 13 18 18 N 1.46754 * 110.38332 * 343.07951 * 17 16 15 19 19 C 1.47210 * 110.33254 * 50.91764 * 18 17 16 20 20 C 1.50343 * 118.68951 * 0.02562 * 15 13 12 21 21 H 1.08997 * 109.47492 * 300.00266 * 1 2 3 22 22 H 1.09002 * 109.46605 * 60.00618 * 1 2 3 23 23 H 1.09002 * 109.46583 * 180.02562 * 1 2 3 24 24 H 0.96997 * 120.00060 * 179.97438 * 7 6 4 25 25 H 0.97002 * 119.99815 * 264.99458 * 12 2 1 26 26 H 1.08000 * 118.50027 * 0.35323 * 16 15 13 27 27 H 1.09003 * 109.34209 * 103.17185 * 17 16 15 28 28 H 1.08996 * 109.33769 * 222.85672 * 17 16 15 29 29 H 1.00893 * 110.80911 * 287.56683 * 18 17 16 30 30 H 1.09002 * 109.62572 * 171.06424 * 19 18 17 31 31 H 1.09001 * 109.62524 * 50.68831 * 19 18 17 32 32 H 1.09000 * 109.43323 * 43.37242 * 20 15 13 33 33 H 1.08996 * 109.39440 * 283.48513 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.8074 -1.1187 4.0079 10 1 1.8268 -0.4196 5.2205 11 1 1.8279 -2.5195 4.0084 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8575 1.1615 -2.4119 15 6 2.6380 -0.7118 -3.5580 16 6 2.7536 -0.0288 -4.6809 17 6 3.2370 -0.6408 -5.9643 18 7 3.9160 -1.9146 -5.6992 19 6 3.0714 -2.7793 -4.8589 20 6 2.9869 -2.1707 -3.4571 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 0.7081 1.1611 3.4843 25 1 2.2491 -1.6318 -1.1525 26 1 2.4886 1.0182 -4.6768 27 1 2.3864 -0.8191 -6.6222 28 1 3.9326 0.0430 -6.4507 29 1 4.8151 -1.7587 -5.2687 30 1 3.5112 -3.7749 -4.8000 31 1 2.0723 -2.8453 -5.2898 32 1 2.2188 -2.6883 -2.8825 33 1 3.9490 -2.2789 -2.9565 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403578006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:00 Heat of formation + Delta-G solvation = -54.596916 kcal Electronic energy + Delta-G solvation = -15377.906695 eV Core-core repulsion = 12823.167035 eV Total energy + Delta-G solvation = -2554.739661 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.09036 -39.06029 -36.80802 -34.48099 -33.12650 -31.84827 -30.60785 -27.40025 -25.79889 -24.30285 -23.15152 -21.58060 -19.90920 -18.83937 -17.83742 -17.23553 -16.39143 -16.02293 -15.91194 -15.50843 -15.23228 -14.50668 -14.44065 -14.24870 -13.76418 -13.58131 -13.35639 -13.00075 -12.89902 -12.76892 -12.37370 -12.30800 -12.17779 -11.79014 -11.17976 -10.94360 -10.62976 -10.16046 -9.77626 -9.49213 -8.21045 -6.39830 0.38820 1.43201 1.45780 1.53812 2.29901 2.34257 2.58708 3.09156 3.37476 3.75575 3.84865 4.00656 4.24813 4.43324 4.61498 4.62540 4.69414 4.84471 4.85443 4.93912 5.02167 5.05407 5.28505 5.35520 5.54827 5.55373 5.66293 5.87487 5.93915 6.03831 6.41590 6.66946 6.88977 7.27075 7.46512 8.85424 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045643 B = 0.006294 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.307012 B = 4447.438440 C = 4826.139542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.005 1.005 4 C -0.550 4.550 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.262 1.262 12 N -0.697 5.697 13 C 0.525 3.475 14 O -0.610 6.610 15 C -0.182 4.182 16 C -0.109 4.109 17 C 0.087 3.913 18 N -0.678 5.678 19 C 0.062 3.938 20 C -0.117 4.117 21 H 0.069 0.931 22 H 0.009 0.991 23 H 0.042 0.958 24 H 0.267 0.733 25 H 0.404 0.596 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.349 0.651 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -9.146 -13.348 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.314 3.686 14 O -0.494 6.494 15 C -0.185 4.185 16 C -0.131 4.131 17 C -0.042 4.042 18 N -0.306 5.306 19 C -0.068 4.068 20 C -0.156 4.156 21 H 0.087 0.913 22 H 0.028 0.972 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.240 0.760 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.166 0.834 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.776 -8.536 -13.819 16.930 hybrid contribution 0.021 0.482 2.141 2.195 sum 4.797 -8.054 -11.678 14.975 Atomic orbital electron populations 1.21894 0.98208 0.99526 0.99513 1.18383 0.91244 0.91856 0.82055 0.98689 1.21491 1.32915 1.13704 0.90717 0.90809 1.25853 0.94750 0.95559 1.02457 1.70050 1.36825 1.23933 1.24814 0.85334 0.78633 0.78724 0.77268 1.19524 1.21048 1.18664 1.46223 1.64478 1.14179 1.09611 1.19356 0.77718 0.86453 0.85050 1.90693 1.54298 1.18300 1.86148 1.21021 1.06427 0.98142 0.92937 1.24014 0.93254 1.00157 0.95664 1.21169 1.00402 0.90661 0.91987 1.61155 1.06531 1.13770 1.49154 1.22145 0.98854 0.97301 0.88475 1.21180 1.03026 0.89860 1.01521 0.91271 0.97221 0.93931 0.92427 0.75951 0.87795 0.87699 0.87091 0.83357 0.87687 0.90501 0.89782 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.49 2.56 44.25 0.11 14.60 16 3 H 0.00 -0.31 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -29.71 8.73 25.60 0.22 -29.49 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.98 42.10 29.54 68.60 2.03 44.13 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 N -0.70 -30.63 5.01 -449.71 -2.25 -32.88 16 13 C 0.52 22.73 7.69 86.57 0.67 23.39 16 14 O -0.61 -32.17 15.69 -4.08 -0.06 -32.24 16 15 C -0.18 -5.59 5.85 -18.51 -0.11 -5.70 16 16 C -0.11 -2.94 9.54 24.66 0.24 -2.70 16 17 C 0.09 1.54 6.73 85.42 0.58 2.12 16 18 N -0.68 -11.26 6.98 -518.32 -3.62 -14.88 16 19 C 0.06 1.03 6.63 86.26 0.57 1.60 16 20 C -0.12 -2.58 5.14 29.76 0.15 -2.42 16 21 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 22 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.40 14.95 6.83 -92.71 -0.63 14.32 16 26 H 0.10 3.27 7.26 -2.91 -0.02 3.25 16 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.35 5.33 8.77 -89.70 -0.79 4.55 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 32 H 0.08 1.83 7.30 -2.39 -0.02 1.82 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -69.34 274.07 -0.42 -69.76 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.30 Total: 23.01 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 3.55 Total: -3.72 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -5.63 Total: -100.94 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.06 Total: -32.24 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -69.34 -0.42 -69.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403578006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.163 kcal (2) G-P(sol) polarization free energy of solvation -69.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds