Wall clock time and date at job start Mon Mar 30 2020 03:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00296 * 2 1 4 4 C 1.50701 * 109.46756 * 270.00033 * 3 2 1 5 5 H 1.08003 * 120.00324 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99890 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00164 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99941 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46825 * 90.00584 * 8 6 4 10 10 H 1.48501 * 109.46960 * 210.00252 * 8 6 4 11 11 H 1.48494 * 109.47257 * 330.00007 * 8 6 4 12 12 C 1.34780 * 120.00022 * 179.97438 * 2 1 3 13 13 O 1.21611 * 120.00144 * 184.72706 * 12 2 1 14 14 C 1.47107 * 119.99650 * 4.73004 * 12 2 1 15 15 C 1.31928 * 118.68595 * 280.01922 * 14 12 2 16 16 C 1.50183 * 122.99500 * 180.33260 * 15 14 12 17 17 N 1.46834 * 110.24319 * 342.91914 * 16 15 14 18 18 C 1.47206 * 110.27967 * 51.24638 * 17 16 15 19 19 C 1.50334 * 118.69189 * 100.02745 * 14 12 2 20 20 H 1.08998 * 109.47312 * 274.31027 * 1 2 3 21 21 H 1.09004 * 109.46939 * 34.31088 * 1 2 3 22 22 H 1.08999 * 109.47284 * 154.31064 * 1 2 3 23 23 H 1.09001 * 109.47136 * 29.99574 * 3 2 1 24 24 H 1.08996 * 109.47572 * 150.00106 * 3 2 1 25 25 H 0.97001 * 119.99866 * 179.97438 * 7 6 4 26 26 H 1.07999 * 118.50755 * 0.35911 * 15 14 12 27 27 H 1.09000 * 109.34063 * 222.68467 * 16 15 14 28 28 H 1.09000 * 109.21116 * 103.07729 * 16 15 14 29 29 H 1.00898 * 111.00078 * 174.68572 * 17 16 15 30 30 H 1.08995 * 109.62774 * 170.85793 * 18 17 16 31 31 H 1.09000 * 109.78414 * 50.38642 * 18 17 16 32 32 H 1.09000 * 109.43301 * 43.38393 * 19 14 12 33 33 H 1.09005 * 109.43062 * 283.52875 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0981 1.0956 -2.2418 6 6 3.1261 2.8778 -1.6729 7 7 3.5535 3.6180 -0.6733 8 14 3.4380 3.4166 -3.4341 9 1 2.3079 4.2589 -3.9015 10 1 4.6981 4.2000 -3.4963 11 1 3.5561 2.2193 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3519 -1.1690 0.0873 14 6 1.4071 -2.4391 -0.1040 15 6 0.8365 -2.9322 0.9786 16 6 0.0727 -4.2253 0.9837 17 7 -0.2818 -4.6114 -0.3879 18 6 0.9107 -4.5824 -1.2505 19 6 1.3392 -3.1251 -1.4399 20 1 -0.3634 0.0772 1.0247 21 1 -0.3633 0.8489 -0.5793 22 1 -0.3634 -0.9261 -0.4455 23 1 1.6085 2.0284 0.5138 24 1 3.1500 1.1384 0.5138 25 1 4.0303 4.4438 -0.8506 26 1 0.9223 -2.3807 1.9032 27 1 -0.8373 -4.1046 1.5714 28 1 0.6902 -5.0047 1.4301 29 1 -0.7191 -5.5205 -0.4061 30 1 0.6731 -5.0229 -2.2187 31 1 1.7190 -5.1436 -0.7816 32 1 2.3204 -3.0942 -1.9137 33 1 0.6149 -2.6136 -2.0739 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403651441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:35 Heat of formation + Delta-G solvation = -42.683324 kcal Electronic energy + Delta-G solvation = -15528.071978 eV Core-core repulsion = 12973.848929 eV Total energy + Delta-G solvation = -2554.223048 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06431 -38.88467 -36.63990 -34.81593 -33.36815 -31.80643 -29.82845 -27.50418 -26.15342 -24.55775 -23.98858 -20.97030 -18.88282 -18.73100 -18.21269 -17.37374 -16.58918 -16.26794 -16.23950 -15.33042 -15.28214 -14.59637 -14.53296 -14.07286 -13.66639 -13.49773 -13.36949 -13.33766 -13.11104 -12.83282 -12.57024 -12.41524 -12.24061 -11.85930 -11.75281 -10.69889 -10.66870 -10.03315 -9.51548 -9.37132 -8.26076 -6.41843 0.85740 1.34908 1.38396 1.48669 1.67015 2.31776 2.45053 3.03321 3.30233 3.56786 3.86430 4.19176 4.24745 4.37445 4.41908 4.56916 4.58703 4.64900 4.82882 4.89555 4.90066 4.99141 5.05568 5.16294 5.26254 5.50501 5.69151 5.78040 5.94486 6.00912 6.57932 6.62778 6.69307 7.20788 7.36366 8.81602 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043389 B = 0.006818 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.170982 B = 4105.876485 C = 4321.658120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.256 3.744 4 C -0.548 4.548 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.272 1.272 12 C 0.533 3.467 13 O -0.603 6.603 14 C -0.151 4.151 15 C -0.112 4.112 16 C 0.092 3.908 17 N -0.688 5.688 18 C 0.066 3.934 19 C -0.070 4.070 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.026 0.974 24 H -0.002 1.002 25 H 0.269 0.731 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.062 0.938 29 H 0.363 0.637 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 -16.163 0.590 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.331 5.331 3 C 0.135 3.865 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.197 1.197 12 C 0.322 3.678 13 O -0.486 6.486 14 C -0.154 4.154 15 C -0.132 4.132 16 C -0.036 4.036 17 N -0.321 5.321 18 C -0.064 4.064 19 C -0.108 4.108 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.107 0.893 23 H 0.044 0.956 24 H 0.016 0.984 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.080 0.920 29 H 0.183 0.817 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.987 -15.333 0.512 18.870 hybrid contribution 1.242 0.246 -0.241 1.289 sum -9.745 -15.087 0.271 17.963 Atomic orbital electron populations 1.21858 0.77804 1.03735 1.02372 1.48220 1.08448 1.06270 1.70187 1.18818 0.91112 0.80174 0.96402 1.21684 1.37319 1.06824 0.92780 0.92854 1.25914 0.94652 0.96241 1.02372 1.70058 1.38727 1.14777 1.33202 0.85352 0.78229 0.78249 0.78606 1.18544 1.20397 1.19726 1.19466 0.87036 0.85570 0.75747 1.90716 1.16616 1.88308 1.52965 1.20793 1.00879 0.94677 0.99099 1.22891 0.95372 0.98350 0.96547 1.20887 0.99506 0.92351 0.90877 1.60653 1.26966 1.35840 1.08670 1.21922 0.91826 0.93712 0.98932 1.20399 1.01348 0.96633 0.92423 0.91355 0.91433 0.89334 0.95592 0.98409 0.92245 0.87043 0.86620 0.92048 0.81670 0.87855 0.94445 0.92191 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.87 10.14 127.77 1.30 4.16 16 2 N -0.60 -27.89 2.86 -855.44 -2.44 -30.34 16 3 C 0.26 14.62 5.22 85.63 0.45 15.07 16 4 C -0.55 -32.86 9.39 25.60 0.24 -32.62 16 5 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 8 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.53 24.75 6.89 86.57 0.60 25.35 16 13 O -0.60 -34.56 16.66 -4.07 -0.07 -34.63 16 14 C -0.15 -5.07 3.80 -18.51 -0.07 -5.14 16 15 C -0.11 -2.94 9.18 24.66 0.23 -2.72 16 16 C 0.09 1.57 6.74 85.41 0.58 2.14 16 17 N -0.69 -11.35 6.90 -518.12 -3.58 -14.93 16 18 C 0.07 1.27 6.61 86.27 0.57 1.84 16 19 C -0.07 -2.00 6.03 29.76 0.18 -1.83 16 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 22 H 0.09 2.59 6.56 -2.39 -0.02 2.57 16 23 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 24 H 0.00 -0.15 7.36 -2.39 -0.02 -0.16 16 25 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.11 2.96 7.98 -2.91 -0.02 2.93 16 27 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.36 3.78 8.90 -89.70 -0.80 2.98 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.04 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -77.23 280.04 1.04 -76.19 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.30 Total: 5.91 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 4.52 Total: 7.15 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -5.74 Total: -102.42 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.07 Total: -34.63 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -77.23 1.04 -76.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403651441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.503 kcal (2) G-P(sol) polarization free energy of solvation -77.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds