Wall clock time and date at job start Mon Mar 30 2020 03:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99813 * 2 1 4 4 N 1.46890 * 109.47500 * 234.87579 * 3 2 1 5 5 C 1.46897 * 111.00415 * 199.38914 * 4 3 2 6 6 C 1.50699 * 109.47263 * 64.15496 * 5 4 3 7 7 H 1.07993 * 120.00269 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00192 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00310 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99924 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46998 * 89.99952 * 10 8 6 12 12 H 1.48493 * 109.47126 * 210.00172 * 10 8 6 13 13 H 1.48498 * 109.47236 * 330.00362 * 10 8 6 14 14 C 1.46905 * 111.00333 * 75.43099 * 4 3 2 15 15 H 1.09004 * 110.43042 * 307.55673 * 14 4 3 16 16 C 1.54625 * 110.48971 * 184.86795 * 14 4 3 17 17 C 1.54482 * 101.76381 * 266.11943 * 16 14 4 18 18 N 1.46759 * 105.47509 * 334.58650 * 17 16 14 19 19 C 1.34416 * 111.30152 * 17.01155 * 18 17 16 20 20 O 1.21281 * 124.94664 * 179.62355 * 19 18 17 21 21 H 1.07997 * 120.00558 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.00244 * 179.97438 * 1 2 3 23 23 H 1.07998 * 120.00374 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47316 * 354.87928 * 3 2 1 25 25 H 1.09001 * 109.47027 * 114.87447 * 3 2 1 26 26 H 1.09004 * 109.47416 * 184.15878 * 5 4 3 27 27 H 1.09001 * 109.46698 * 304.15628 * 5 4 3 28 28 H 0.97003 * 120.00153 * 179.97438 * 9 8 6 29 29 H 1.09001 * 110.97093 * 24.23625 * 16 14 4 30 30 H 1.08995 * 110.96790 * 148.00227 * 16 14 4 31 31 H 1.09003 * 110.24595 * 215.58265 * 17 16 14 32 32 H 1.08999 * 110.31714 * 93.62419 * 17 16 14 33 33 H 0.96999 * 124.35094 * 196.99651 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9983 1.3309 -1.1327 5 6 4.0508 2.3342 -0.9240 6 6 4.8836 1.9476 0.2709 7 1 4.6543 1.0465 0.8202 8 6 5.9383 2.7443 0.6631 9 7 6.6655 2.4067 1.7056 10 14 6.3355 4.3027 -0.2874 11 1 5.5818 5.4426 0.2939 12 1 7.7923 4.5772 -0.2015 13 1 5.9478 4.1272 -1.7101 14 6 2.2879 1.5681 -2.3965 15 1 1.4689 0.8581 -2.5117 16 6 3.2636 1.4720 -3.5921 17 6 3.6727 2.9492 -3.7844 18 7 2.5602 3.7375 -3.2415 19 6 1.7695 2.9882 -2.4539 20 8 0.7837 3.3918 -1.8741 21 1 -0.5401 0.9352 -0.0004 22 1 -0.5401 -0.9353 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 -0.0917 25 1 2.6194 1.4037 0.9323 26 1 4.6857 2.3842 -1.8086 27 1 3.5943 3.3084 -0.7489 28 1 7.4078 2.9670 1.9812 29 1 4.1282 0.8572 -3.3417 30 1 2.7579 1.0888 -4.4784 31 1 3.8087 3.1682 -4.8435 32 1 4.5896 3.1626 -3.2349 33 1 2.4143 4.6783 -3.4269 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590002400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:56 Heat of formation + Delta-G solvation = 0.829752 kcal Electronic energy + Delta-G solvation = -16175.452057 eV Core-core repulsion = 13623.115877 eV Total energy + Delta-G solvation = -2552.336180 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49557 -36.62947 -35.75124 -33.11538 -32.25283 -30.10886 -28.18695 -26.38934 -24.19703 -21.68481 -21.38781 -19.55798 -18.88943 -17.35467 -17.14392 -15.87612 -15.17807 -14.63108 -14.38172 -14.10554 -13.70574 -13.30899 -13.08956 -12.82013 -12.43035 -12.25875 -11.89859 -11.45254 -11.03328 -10.94177 -10.85079 -10.65206 -10.08965 -9.94302 -9.85440 -9.37756 -8.92640 -8.80905 -8.56702 -7.51111 -6.12211 -4.09861 2.71890 2.91564 3.20575 3.26613 3.29472 3.62393 4.33832 4.54977 4.71330 4.87649 5.16450 5.20086 5.33295 5.55335 5.68280 5.71357 5.86989 6.07742 6.14529 6.23879 6.45453 6.53850 6.75818 6.83095 7.00832 7.10859 7.20518 7.24101 7.50778 7.74361 7.90137 8.51670 8.55598 8.96127 9.48456 11.00613 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.012351 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.173468 B = 2266.416647 C = 2999.407141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.122 4.122 3 C 0.066 3.934 4 N -0.492 5.492 5 C 0.150 3.850 6 C -0.513 4.513 7 H 0.084 0.916 8 C 0.071 3.929 9 N -0.896 5.896 10 Si 0.874 3.126 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.051 3.949 15 H 0.107 0.893 16 C -0.127 4.127 17 C 0.090 3.910 18 N -0.732 5.732 19 C 0.493 3.507 20 O -0.539 6.539 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.048 0.952 25 H 0.103 0.897 26 H 0.042 0.958 27 H -0.015 1.015 28 H 0.264 0.736 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -0.972 -11.104 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.141 4.141 3 C -0.061 4.061 4 N -0.216 5.216 5 C 0.024 3.976 6 C -0.551 4.551 7 H 0.102 0.898 8 C -0.131 4.131 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.062 4.062 15 H 0.125 0.875 16 C -0.165 4.165 17 C -0.034 4.034 18 N -0.388 5.388 19 C 0.278 3.722 20 O -0.415 6.415 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.127 0.873 24 H 0.067 0.933 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.002 0.998 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.469 -1.290 -10.680 12.553 hybrid contribution -0.003 2.181 -0.448 2.226 sum -6.472 0.890 -11.128 12.904 Atomic orbital electron populations 1.23767 0.96074 1.01156 1.04139 1.23049 0.95244 0.99115 0.96690 1.21431 0.94488 0.94136 0.96054 1.62360 1.10843 1.49326 0.99078 1.20507 0.89927 0.88444 0.98742 1.21004 1.12511 1.10453 1.11103 0.89845 1.24875 0.95897 0.97465 0.94873 1.69881 1.19480 1.38603 1.25511 0.86910 0.77701 0.84357 0.80900 1.20437 1.21073 1.19198 1.22638 0.97438 0.92557 0.93561 0.87512 1.22661 1.01063 0.95647 0.97085 1.22388 0.90535 0.91593 0.98913 1.46283 1.28856 1.13138 1.50516 1.22210 0.81989 0.90768 0.77226 1.90672 1.26418 1.78556 1.45883 0.88905 0.89113 0.87253 0.93346 0.87876 0.94025 0.99759 0.92565 0.87667 0.90078 0.90788 0.89875 0.75997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.26 14.32 29.02 0.42 -2.84 16 2 C -0.12 -2.09 9.06 -36.02 -0.33 -2.42 16 3 C 0.07 1.34 5.16 -4.98 -0.03 1.32 16 4 N -0.49 -10.00 4.42 -229.53 -1.01 -11.02 16 5 C 0.15 3.46 2.57 -4.98 -0.01 3.45 16 6 C -0.51 -14.08 8.77 -34.44 -0.30 -14.38 16 7 H 0.08 2.50 7.42 -52.49 -0.39 2.11 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 10 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -5.87 6.02 56.52 0.34 -5.53 16 14 C 0.05 0.87 3.07 -67.72 -0.21 0.66 16 15 H 0.11 1.72 7.53 -51.93 -0.39 1.33 16 16 C -0.13 -1.70 6.24 -25.10 -0.16 -1.86 16 17 C 0.09 1.21 6.89 -3.12 -0.02 1.19 16 18 N -0.73 -11.28 6.15 -59.20 -0.36 -11.64 16 19 C 0.49 9.14 6.14 -10.86 -0.07 9.08 16 20 O -0.54 -11.71 16.55 5.56 0.09 -11.62 16 21 H 0.09 1.48 7.84 -52.49 -0.41 1.07 16 22 H 0.09 1.17 8.06 -52.48 -0.42 0.75 16 23 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 24 H 0.05 1.05 5.75 -51.93 -0.30 0.75 16 25 H 0.10 2.36 6.43 -51.93 -0.33 2.02 16 26 H 0.04 0.92 3.59 -51.93 -0.19 0.74 16 27 H -0.02 -0.38 6.74 -51.93 -0.35 -0.73 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.10 1.47 7.90 -51.93 -0.41 1.06 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.30 5.52 -51.93 -0.29 1.01 16 33 H 0.40 5.43 8.96 -40.82 -0.37 5.06 16 LS Contribution 264.86 15.07 3.99 3.99 Total: -1.00 -31.61 264.86 -6.30 -37.91 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.31 Total: 6.13 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.80 Total: -3.91 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.60 Total: -48.75 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.61 -6.30 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.738 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds