Wall clock time and date at job start Mon Mar 30 2020 03:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99813 * 2 1 4 4 N 1.46890 * 109.47500 * 234.87579 * 3 2 1 5 5 C 1.46897 * 111.00415 * 199.38914 * 4 3 2 6 6 C 1.50699 * 109.47263 * 64.15496 * 5 4 3 7 7 H 1.07993 * 120.00269 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00192 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00310 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99924 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46998 * 89.99952 * 10 8 6 12 12 H 1.48493 * 109.47126 * 210.00172 * 10 8 6 13 13 H 1.48498 * 109.47236 * 330.00362 * 10 8 6 14 14 C 1.46905 * 111.00333 * 75.43099 * 4 3 2 15 15 H 1.09004 * 110.43042 * 307.55673 * 14 4 3 16 16 C 1.54625 * 110.48971 * 184.86795 * 14 4 3 17 17 C 1.54482 * 101.76381 * 266.11943 * 16 14 4 18 18 N 1.46759 * 105.47509 * 334.58650 * 17 16 14 19 19 C 1.34416 * 111.30152 * 17.01155 * 18 17 16 20 20 O 1.21281 * 124.94664 * 179.62355 * 19 18 17 21 21 H 1.07997 * 120.00558 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.00244 * 179.97438 * 1 2 3 23 23 H 1.07998 * 120.00374 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47316 * 354.87928 * 3 2 1 25 25 H 1.09001 * 109.47027 * 114.87447 * 3 2 1 26 26 H 1.09004 * 109.47416 * 184.15878 * 5 4 3 27 27 H 1.09001 * 109.46698 * 304.15628 * 5 4 3 28 28 H 0.97003 * 120.00153 * 179.97438 * 9 8 6 29 29 H 1.09001 * 110.97093 * 24.23625 * 16 14 4 30 30 H 1.08995 * 110.96790 * 148.00227 * 16 14 4 31 31 H 1.09003 * 110.24595 * 215.58265 * 17 16 14 32 32 H 1.08999 * 110.31714 * 93.62419 * 17 16 14 33 33 H 0.96999 * 124.35094 * 196.99651 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9983 1.3309 -1.1327 5 6 4.0508 2.3342 -0.9240 6 6 4.8836 1.9476 0.2709 7 1 4.6543 1.0465 0.8202 8 6 5.9383 2.7443 0.6631 9 7 6.6655 2.4067 1.7056 10 14 6.3355 4.3027 -0.2874 11 1 5.5818 5.4426 0.2939 12 1 7.7923 4.5772 -0.2015 13 1 5.9478 4.1272 -1.7101 14 6 2.2879 1.5681 -2.3965 15 1 1.4689 0.8581 -2.5117 16 6 3.2636 1.4720 -3.5921 17 6 3.6727 2.9492 -3.7844 18 7 2.5602 3.7375 -3.2415 19 6 1.7695 2.9882 -2.4539 20 8 0.7837 3.3918 -1.8741 21 1 -0.5401 0.9352 -0.0004 22 1 -0.5401 -0.9353 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 -0.0917 25 1 2.6194 1.4037 0.9323 26 1 4.6857 2.3842 -1.8086 27 1 3.5943 3.3084 -0.7489 28 1 7.4078 2.9670 1.9812 29 1 4.1282 0.8572 -3.3417 30 1 2.7579 1.0888 -4.4784 31 1 3.8087 3.1682 -4.8435 32 1 4.5896 3.1626 -3.2349 33 1 2.4143 4.6783 -3.4269 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590002400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:56 Heat of formation + Delta-G solvation = -24.620963 kcal Electronic energy + Delta-G solvation = -16176.555683 eV Core-core repulsion = 13623.115877 eV Total energy + Delta-G solvation = -2553.439806 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.87346 -38.18824 -37.13239 -34.96763 -33.92201 -31.51207 -29.87202 -27.80761 -25.92927 -23.24350 -22.73372 -20.96890 -20.35581 -19.25021 -18.48339 -17.46645 -16.82432 -16.11177 -15.89649 -15.80913 -15.15679 -14.71963 -14.65835 -14.29251 -14.13492 -13.81734 -13.26754 -13.01305 -12.73484 -12.54700 -12.20274 -12.08771 -11.83531 -11.59818 -11.53595 -11.26853 -10.82519 -10.27550 -10.01743 -9.14878 -8.29927 -6.33131 1.29263 1.32707 1.36649 1.42210 1.51347 2.31107 2.42345 3.01563 3.11052 3.49260 3.62874 4.09735 4.11498 4.24590 4.27140 4.54501 4.65939 4.69703 4.75427 4.91002 4.97526 5.07967 5.17196 5.22583 5.48766 5.72730 5.77700 5.85153 5.94710 5.96894 6.22517 6.54885 6.73011 7.19255 7.29240 8.86312 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.012351 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.173468 B = 2266.416647 C = 2999.407141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.073 3.927 4 N -0.497 5.497 5 C 0.165 3.835 6 C -0.518 4.518 7 H 0.041 0.959 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.938 3.062 11 H -0.284 1.284 12 H -0.278 1.278 13 H -0.230 1.230 14 C 0.045 3.955 15 H 0.118 0.882 16 C -0.119 4.119 17 C 0.086 3.914 18 N -0.722 5.722 19 C 0.483 3.517 20 O -0.581 6.581 21 H 0.084 0.916 22 H 0.125 0.875 23 H 0.117 0.883 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.063 0.937 27 H -0.033 1.033 28 H 0.267 0.733 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -0.795 -14.212 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.161 4.161 3 C -0.055 4.055 4 N -0.221 5.221 5 C 0.039 3.961 6 C -0.556 4.556 7 H 0.059 0.941 8 C -0.187 4.187 9 N -0.585 5.585 10 Si 0.762 3.238 11 H -0.210 1.210 12 H -0.204 1.204 13 H -0.153 1.153 14 C -0.067 4.067 15 H 0.135 0.865 16 C -0.156 4.156 17 C -0.037 4.037 18 N -0.377 5.377 19 C 0.268 3.732 20 O -0.461 6.461 21 H 0.103 0.897 22 H 0.143 0.857 23 H 0.135 0.865 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.081 0.919 27 H -0.015 1.015 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.082 0.918 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.891 -1.122 -13.836 15.497 hybrid contribution 0.050 2.062 0.566 2.139 sum -6.841 0.940 -13.270 14.959 Atomic orbital electron populations 1.23943 0.95210 1.02329 1.00599 1.22842 0.95817 0.97564 0.99883 1.21263 0.93849 0.95723 0.94646 1.62333 1.11018 1.48218 1.00522 1.20247 0.90349 0.88088 0.97421 1.21247 1.13088 1.08989 1.12320 0.94071 1.25795 0.95741 1.01243 0.95906 1.70040 1.20436 1.40439 1.27614 0.85868 0.77579 0.79056 0.81304 1.21031 1.20385 1.15338 1.22817 0.98638 0.92230 0.93023 0.86457 1.22765 1.00253 0.95933 0.96690 1.22585 0.88657 0.91153 1.01334 1.46314 1.28419 1.13748 1.49184 1.22447 0.81875 0.91653 0.77208 1.90644 1.28419 1.79342 1.47650 0.89741 0.85675 0.86477 0.94968 0.91911 0.91896 1.01535 0.92439 0.87977 0.86010 0.85935 0.91773 0.74867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.28 14.32 67.79 0.97 -4.31 16 2 C -0.14 -4.85 9.06 25.65 0.23 -4.62 16 3 C 0.07 3.07 5.16 85.56 0.44 3.51 16 4 N -0.50 -20.21 4.42 -880.11 -3.89 -24.09 16 5 C 0.17 7.65 2.57 85.56 0.22 7.87 16 6 C -0.52 -29.45 8.77 25.60 0.22 -29.23 16 7 H 0.04 2.62 7.42 -2.91 -0.02 2.60 16 8 C 0.01 0.62 5.47 84.66 0.46 1.09 16 9 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 10 Si 0.94 42.82 27.47 68.60 1.88 44.71 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.23 -9.06 6.02 99.48 0.60 -8.46 16 14 C 0.05 1.45 3.07 44.91 0.14 1.59 16 15 H 0.12 3.52 7.53 -2.38 -0.02 3.50 16 16 C -0.12 -2.72 6.24 31.65 0.20 -2.52 16 17 C 0.09 1.93 6.89 86.83 0.60 2.53 16 18 N -0.72 -20.07 6.15 -459.81 -2.83 -22.90 16 19 C 0.48 17.17 6.14 87.90 0.54 17.71 16 20 O -0.58 -25.12 16.55 -3.03 -0.05 -25.17 16 21 H 0.08 2.61 7.84 -2.91 -0.02 2.59 16 22 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 23 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 24 H 0.03 1.45 5.75 -2.39 -0.01 1.43 16 25 H 0.06 3.09 6.43 -2.39 -0.02 3.08 16 26 H 0.06 2.66 3.59 -2.38 -0.01 2.65 16 27 H -0.03 -1.64 6.74 -2.39 -0.02 -1.66 16 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.10 2.48 7.90 -2.39 -0.02 2.46 16 30 H 0.12 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.73 5.52 -2.39 -0.01 1.72 16 33 H 0.41 9.90 8.96 -92.71 -0.83 9.07 16 Total: -1.00 -72.18 264.86 -0.38 -72.56 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.18 Total: 19.54 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.03 Total: -6.39 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -6.42 Total: -105.25 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.71 kcal Total: -72.18 -0.38 -72.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.941 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds