Wall clock time and date at job start Mon Mar 30 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30249 * 125.61755 * 2 1 4 4 C 1.34477 * 108.70151 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.16700 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46881 * 275.02342 * 5 4 3 7 7 C 1.46896 * 111.00178 * 66.04709 * 6 5 4 8 8 C 1.46903 * 110.99849 * 190.00038 * 6 5 4 9 9 H 1.09003 * 109.46808 * 300.00462 * 8 6 5 10 10 C 1.53000 * 109.47120 * 60.00056 * 8 6 5 11 11 C 1.50694 * 109.47066 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 6 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.34332 * 107.66971 * 0.25945 * 4 3 2 20 20 O 1.33966 * 125.61856 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46469 * 90.00460 * 1 2 3 22 22 H 1.08999 * 109.46877 * 210.00121 * 1 2 3 23 23 H 1.09002 * 109.47224 * 330.00554 * 1 2 3 24 24 H 1.09005 * 109.46912 * 155.02562 * 5 4 3 25 25 H 1.08999 * 109.47231 * 35.02260 * 5 4 3 26 26 H 1.09000 * 109.47187 * 183.95237 * 7 6 5 27 27 H 1.08996 * 109.47272 * 303.95406 * 7 6 5 28 28 H 1.09005 * 109.47145 * 63.94894 * 7 6 5 29 29 H 1.08997 * 109.47359 * 180.02562 * 10 8 6 30 30 H 1.09007 * 109.47356 * 300.00024 * 10 8 6 31 31 H 1.09000 * 109.47156 * 59.99749 * 10 8 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.07999 * 126.44787 * 179.73542 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7571 1.5728 0.0002 6 7 5.0760 1.9628 -1.3796 7 6 4.0110 2.7984 -1.9500 8 6 6.3744 2.6466 -1.4466 9 1 6.3452 3.5434 -0.8277 10 6 7.4710 1.7100 -0.9357 11 6 6.6665 3.0313 -2.8741 12 1 5.9587 2.7914 -3.6537 13 6 7.8380 3.6885 -3.1851 14 7 8.7003 3.9802 -2.2358 15 14 8.2004 4.1647 -4.9546 16 1 9.5130 4.8560 -5.0224 17 1 8.2398 2.9430 -5.7978 18 1 7.1363 5.0742 -5.4503 19 6 3.5698 -0.6757 -0.0049 20 8 2.2872 -1.0890 0.0005 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 5.6070 1.0464 0.4347 25 1 4.5419 2.4642 0.5893 26 1 4.2386 3.0148 -2.9938 27 1 3.0606 2.2684 -1.8877 28 1 3.9434 3.7322 -1.3917 29 1 8.4344 2.2174 -0.9850 30 1 7.2596 1.4321 0.0969 31 1 7.5003 0.8131 -1.5545 32 1 9.5246 4.4422 -2.4547 33 1 4.4469 -1.3058 -0.0100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590603960.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:31 Heat of formation + Delta-G solvation = 30.226919 kcal Electronic energy + Delta-G solvation = -15448.935396 eV Core-core repulsion = 12897.873973 eV Total energy + Delta-G solvation = -2551.061423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.05395 -37.11420 -34.54214 -32.88300 -31.90768 -29.15952 -28.41677 -26.36112 -24.63590 -23.39661 -21.35599 -20.74655 -19.29286 -16.86712 -16.52374 -16.18745 -15.17855 -14.54762 -14.26755 -13.87447 -13.68358 -13.26669 -13.14032 -12.63662 -12.28719 -12.03462 -11.61966 -11.06766 -11.05428 -10.86005 -10.70316 -10.50087 -10.32805 -10.10688 -9.95030 -9.83487 -8.88250 -8.50511 -8.35835 -7.15186 -5.99325 -4.03473 1.71661 2.92633 2.97715 3.34096 3.37931 3.41372 4.18854 4.43609 5.04903 5.12576 5.27733 5.29626 5.34480 5.46513 5.54987 5.94719 6.05214 6.18273 6.28298 6.39922 6.54212 6.59014 6.84696 6.92711 7.04500 7.15874 7.53092 7.72458 7.84996 8.01574 8.22082 8.34345 8.61280 9.02623 9.61223 11.07586 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.006191 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.216812 B = 4521.596891 C = 4780.987994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.172 3.828 3 N -0.475 5.475 4 C 0.012 3.988 5 C 0.125 3.875 6 N -0.533 5.533 7 C 0.041 3.959 8 C 0.211 3.789 9 H 0.000 1.000 10 C -0.134 4.134 11 C -0.502 4.502 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.288 1.288 17 H -0.277 1.277 18 H -0.278 1.278 19 C -0.071 4.071 20 O -0.210 6.210 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.011 0.989 29 H 0.086 0.914 30 H 0.008 0.992 31 H 0.035 0.965 32 H 0.261 0.739 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 -7.864 5.013 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.035 4.035 3 N -0.206 5.206 4 C -0.108 4.108 5 C -0.004 4.004 6 N -0.258 5.258 7 C -0.107 4.107 8 C 0.106 3.894 9 H 0.017 0.983 10 C -0.192 4.192 11 C -0.541 4.541 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.214 1.214 17 H -0.202 1.202 18 H -0.204 1.204 19 C -0.141 4.141 20 O -0.097 6.097 21 H 0.107 0.893 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.108 0.892 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.105 0.895 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.636 -7.616 4.755 14.697 hybrid contribution 0.633 0.330 -0.496 0.869 sum -11.004 -7.286 4.258 13.867 Atomic orbital electron populations 1.20160 0.81838 1.04587 1.04361 1.26218 0.96385 0.79088 1.01767 1.70365 1.02134 1.30192 1.17938 1.21865 0.92745 0.92961 1.03194 1.20438 0.91118 0.95878 0.92923 1.62173 1.04439 1.44439 1.14775 1.22185 0.93626 0.94348 1.00553 1.19276 0.82842 0.90535 0.96770 0.98283 1.21877 1.02787 0.99296 0.95267 1.21106 1.04165 1.36119 0.92701 0.91937 1.24926 0.96095 0.95851 0.97347 1.69882 1.10178 1.41347 1.31938 0.86570 0.77332 0.78631 0.84920 1.21353 1.20247 1.20358 1.24741 0.84354 0.96360 1.08654 1.84385 1.17206 1.37699 1.70427 0.89268 0.89794 0.88461 0.89163 0.94323 0.91069 0.93172 0.97021 0.89532 0.97284 0.94602 0.92944 0.76914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.46 10.51 36.01 0.38 -0.08 16 2 C 0.17 2.47 8.34 -12.95 -0.11 2.36 16 3 N -0.48 -8.32 10.19 -7.35 -0.07 -8.39 16 4 C 0.01 0.22 5.84 -82.81 -0.48 -0.27 16 5 C 0.13 2.45 5.32 -4.97 -0.03 2.42 16 6 N -0.53 -12.10 4.61 -237.73 -1.10 -13.19 16 7 C 0.04 0.91 9.07 60.06 0.54 1.45 16 8 C 0.21 5.44 2.06 -68.87 -0.14 5.30 16 9 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 10 C -0.13 -3.25 8.76 37.16 0.33 -2.93 16 11 C -0.50 -13.97 7.93 -34.44 -0.27 -14.24 16 12 H 0.06 1.74 6.39 -52.49 -0.34 1.41 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 14 N -0.89 -25.59 11.32 55.43 0.63 -24.97 16 15 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.07 -1.08 12.08 29.35 0.35 -0.73 16 20 O -0.21 -3.11 10.78 5.35 0.06 -3.06 16 21 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.09 1.65 5.83 -51.93 -0.30 1.35 16 25 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 26 H 0.07 1.62 6.23 -51.93 -0.32 1.30 16 27 H 0.05 1.04 6.32 -51.93 -0.33 0.71 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 30 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.21 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -31.15 273.36 -5.36 -36.50 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.44 Total: -2.37 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 0.48 Total: -5.16 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.54 Total: -46.55 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: 0.06 Total: -3.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.15 -5.36 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590603960.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.729 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds