Wall clock time and date at job start Mon Mar 30 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30249 * 125.61755 * 2 1 4 4 C 1.34477 * 108.70151 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.16700 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46881 * 275.02342 * 5 4 3 7 7 C 1.46896 * 111.00178 * 66.04709 * 6 5 4 8 8 C 1.46903 * 110.99849 * 190.00038 * 6 5 4 9 9 H 1.09003 * 109.46808 * 300.00462 * 8 6 5 10 10 C 1.53000 * 109.47120 * 60.00056 * 8 6 5 11 11 C 1.50694 * 109.47066 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 6 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.34332 * 107.66971 * 0.25945 * 4 3 2 20 20 O 1.33966 * 125.61856 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46469 * 90.00460 * 1 2 3 22 22 H 1.08999 * 109.46877 * 210.00121 * 1 2 3 23 23 H 1.09002 * 109.47224 * 330.00554 * 1 2 3 24 24 H 1.09005 * 109.46912 * 155.02562 * 5 4 3 25 25 H 1.08999 * 109.47231 * 35.02260 * 5 4 3 26 26 H 1.09000 * 109.47187 * 183.95237 * 7 6 5 27 27 H 1.08996 * 109.47272 * 303.95406 * 7 6 5 28 28 H 1.09005 * 109.47145 * 63.94894 * 7 6 5 29 29 H 1.08997 * 109.47359 * 180.02562 * 10 8 6 30 30 H 1.09007 * 109.47356 * 300.00024 * 10 8 6 31 31 H 1.09000 * 109.47156 * 59.99749 * 10 8 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.07999 * 126.44787 * 179.73542 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7571 1.5728 0.0002 6 7 5.0760 1.9628 -1.3796 7 6 4.0110 2.7984 -1.9500 8 6 6.3744 2.6466 -1.4466 9 1 6.3452 3.5434 -0.8277 10 6 7.4710 1.7100 -0.9357 11 6 6.6665 3.0313 -2.8741 12 1 5.9587 2.7914 -3.6537 13 6 7.8380 3.6885 -3.1851 14 7 8.7003 3.9802 -2.2358 15 14 8.2004 4.1647 -4.9546 16 1 9.5130 4.8560 -5.0224 17 1 8.2398 2.9430 -5.7978 18 1 7.1363 5.0742 -5.4503 19 6 3.5698 -0.6757 -0.0049 20 8 2.2872 -1.0890 0.0005 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 5.6070 1.0464 0.4347 25 1 4.5419 2.4642 0.5893 26 1 4.2386 3.0148 -2.9938 27 1 3.0606 2.2684 -1.8877 28 1 3.9434 3.7322 -1.3917 29 1 8.4344 2.2174 -0.9850 30 1 7.2596 1.4321 0.0969 31 1 7.5003 0.8131 -1.5545 32 1 9.5246 4.4422 -2.4547 33 1 4.4469 -1.3058 -0.0100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590603960.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:31 Heat of formation + Delta-G solvation = 7.077276 kcal Electronic energy + Delta-G solvation = -15449.939240 eV Core-core repulsion = 12897.873973 eV Total energy + Delta-G solvation = -2552.065267 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.23148 -38.89902 -35.91304 -34.70145 -33.12190 -31.08055 -29.75846 -27.83077 -26.54659 -25.14791 -22.57873 -22.15465 -21.06530 -18.47449 -17.87043 -17.71144 -17.04053 -16.01516 -15.83674 -15.63146 -14.93382 -14.90943 -14.17877 -13.89296 -13.82631 -13.32239 -13.22294 -12.95654 -12.81615 -12.67560 -12.49526 -12.17251 -12.02215 -11.88832 -11.80466 -11.44411 -10.90515 -10.51866 -9.67226 -9.02154 -8.11396 -6.23299 0.57575 1.42863 1.44506 1.52138 1.67012 1.91981 2.43072 3.10727 3.16775 3.52199 3.83501 4.09938 4.43556 4.49670 4.60403 4.67454 4.68281 4.72317 4.83779 4.94807 4.97799 5.01951 5.04905 5.11446 5.20789 5.44938 5.49995 5.71488 5.76677 6.24345 6.33383 6.66372 6.84151 6.89545 7.45470 8.94433 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.006191 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.216812 B = 4521.596891 C = 4780.987994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.182 3.818 3 N -0.515 5.515 4 C -0.022 4.022 5 C 0.131 3.869 6 N -0.536 5.536 7 C 0.053 3.947 8 C 0.215 3.785 9 H -0.038 1.038 10 C -0.122 4.122 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.961 3.039 16 H -0.282 1.282 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.057 4.057 20 O -0.209 6.209 21 H 0.105 0.895 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.024 0.976 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.000 1.000 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 -9.267 4.654 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.026 4.026 3 N -0.246 5.246 4 C -0.141 4.141 5 C 0.003 3.997 6 N -0.260 5.260 7 C -0.096 4.096 8 C 0.108 3.892 9 H -0.020 1.020 10 C -0.180 4.180 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.786 3.214 16 H -0.207 1.207 17 H -0.196 1.196 18 H -0.200 1.200 19 C -0.127 4.127 20 O -0.096 6.096 21 H 0.124 0.876 22 H 0.130 0.870 23 H 0.124 0.876 24 H 0.119 0.881 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.019 0.981 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.766 -9.020 4.405 16.240 hybrid contribution 0.884 0.738 -0.325 1.196 sum -11.882 -8.283 4.080 15.047 Atomic orbital electron populations 1.20490 0.78081 1.06402 1.05931 1.27290 0.98087 0.78157 0.99041 1.70313 1.02389 1.31889 1.20002 1.21629 0.92474 0.93722 1.06254 1.20348 0.92747 0.95855 0.90738 1.62129 1.03351 1.43509 1.17037 1.22057 0.94064 0.94029 0.99447 1.19112 0.84970 0.89784 0.95312 1.02046 1.21679 1.00877 0.98465 0.96958 1.21360 1.04382 1.36725 0.93562 0.92546 1.25694 0.95863 0.95685 1.01321 1.70006 1.10437 1.41636 1.33751 0.85572 0.77253 0.78439 0.80119 1.20739 1.19606 1.19953 1.25189 0.85348 0.95743 1.06451 1.84430 1.17044 1.37825 1.70325 0.87621 0.87008 0.87587 0.88077 0.95784 0.92376 0.91813 0.98136 0.91967 0.94520 0.94487 0.92840 0.74113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 71.24 0.75 0.00 16 2 C 0.18 4.79 8.34 88.34 0.74 5.53 16 3 N -0.51 -17.45 10.19 -291.98 -2.97 -20.43 16 4 C -0.02 -0.77 5.84 41.26 0.24 -0.53 16 5 C 0.13 5.13 5.32 85.56 0.46 5.58 16 6 N -0.54 -24.46 4.61 -906.04 -4.18 -28.64 16 7 C 0.05 2.35 9.07 127.69 1.16 3.50 16 8 C 0.21 11.27 2.06 44.17 0.09 11.36 16 9 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 10 C -0.12 -5.91 8.76 71.98 0.63 -5.27 16 11 C -0.52 -29.41 7.93 25.60 0.20 -29.20 16 12 H 0.06 3.18 6.39 -2.91 -0.02 3.16 16 13 C 0.01 0.74 5.30 84.66 0.45 1.19 16 14 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 15 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 C -0.06 -1.61 12.08 66.93 0.81 -0.80 16 20 O -0.21 -5.64 10.78 -3.77 -0.04 -5.68 16 21 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.10 3.62 5.83 -2.38 -0.01 3.61 16 25 H 0.02 1.00 8.12 -2.39 -0.02 0.98 16 26 H 0.06 2.70 6.23 -2.39 -0.01 2.68 16 27 H 0.06 2.65 6.32 -2.39 -0.02 2.63 16 28 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 29 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 30 H 0.04 1.52 6.20 -2.38 -0.01 1.51 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.24 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -67.18 273.36 1.69 -65.48 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.10 Total: 4.67 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.52 Total: -8.65 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -6.91 Total: -102.02 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.04 Total: -5.68 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.18 1.69 -65.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590603960.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.559 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds