Wall clock time and date at job start Mon Mar 30 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 120.00158 * 2 1 4 4 H 1.07999 * 120.00524 * 202.92877 * 3 2 1 5 5 C 1.38817 * 120.00284 * 22.93224 * 3 2 1 6 6 N 1.31621 * 119.99280 * 13.11161 * 5 3 2 7 7 Si 1.86799 * 120.00333 * 193.11387 * 5 3 2 8 8 H 1.48504 * 109.46681 * 89.99767 * 7 5 3 9 9 H 1.48496 * 109.46950 * 209.99713 * 7 5 3 10 10 H 1.48497 * 109.47229 * 329.99900 * 7 5 3 11 11 C 1.46496 * 120.00005 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47506 * 89.99953 * 11 2 1 13 13 H 1.09001 * 109.46617 * 305.00024 * 12 11 2 14 14 O 1.42904 * 109.47264 * 64.99527 * 12 11 2 15 15 C 1.52992 * 109.47676 * 185.00080 * 12 11 2 16 16 C 1.53001 * 109.47333 * 174.99767 * 15 12 11 17 17 C 1.47202 * 115.54836 * 325.58038 * 16 15 12 18 18 N 5.35382 * 88.60337 * 237.43135 * 2 1 3 19 19 C 1.53000 * 117.51684 * 111.28854 * 16 15 12 20 20 C 1.52999 * 117.49762 * 179.91697 * 16 15 12 21 21 H 1.09001 * 109.46634 * 275.12594 * 1 2 3 22 22 H 1.09004 * 109.47196 * 35.12057 * 1 2 3 23 23 H 1.08997 * 109.47197 * 155.12476 * 1 2 3 24 24 H 0.97003 * 119.99324 * 180.02562 * 6 5 3 25 25 H 1.09003 * 109.47484 * 329.99663 * 11 2 1 26 26 H 1.09001 * 109.47601 * 209.99598 * 11 2 1 27 27 H 0.96701 * 113.99010 * 60.00623 * 14 12 11 28 28 H 1.09011 * 109.47047 * 54.99861 * 15 12 11 29 29 H 1.08995 * 109.47257 * 295.00198 * 15 12 11 30 30 H 1.09000 * 117.49391 * 214.96965 * 19 16 15 31 31 H 1.09001 * 117.49573 * 359.97438 * 19 16 15 32 32 H 1.08997 * 117.50412 * 359.97077 * 20 16 15 33 33 H 1.08997 * 117.50228 * 144.99770 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1657 1.2229 -0.3644 5 6 1.5379 2.3406 0.4684 6 7 0.4117 2.2606 1.1449 7 14 2.3130 4.0079 0.1386 8 1 1.7940 4.5502 -1.1428 9 1 1.9730 4.9392 1.2442 10 1 3.7881 3.8597 0.0521 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5061 -1.7541 -1.9823 14 8 3.3209 -0.7716 -2.0818 15 6 3.1060 -3.0932 -1.4457 16 6 3.2471 -3.5880 -2.8866 17 6 2.1675 -3.1880 -3.8039 18 7 1.3345 -2.8812 -4.5106 19 6 4.6607 -3.6935 -3.4625 20 6 3.8847 -4.9620 -3.1024 21 1 -0.3632 0.0918 1.0236 22 1 -0.3634 0.8406 -0.5912 23 1 -0.3633 -0.9323 -0.4323 24 1 -0.0159 3.0675 1.4719 25 1 1.6084 -2.0286 0.5130 26 1 3.1499 -1.1387 0.5133 27 1 4.1836 -0.6804 -1.6546 28 1 2.4851 -3.7893 -0.8817 29 1 4.0917 -3.0302 -0.9850 30 1 4.7912 -3.4667 -4.5206 31 1 5.4904 -3.4099 -2.8149 32 1 4.2040 -5.5132 -2.2180 33 1 3.5048 -5.5697 -3.9236 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599280089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:18 Heat of formation + Delta-G solvation = 24.106102 kcal Electronic energy + Delta-G solvation = -15444.488175 eV Core-core repulsion = 12893.161333 eV Total energy + Delta-G solvation = -2551.326842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.12085 -36.82296 -35.46039 -34.62255 -31.46107 -30.12858 -26.54494 -25.68871 -23.26751 -22.71088 -21.96936 -20.41879 -17.27869 -16.68962 -15.56073 -15.29914 -14.84407 -14.64957 -14.18308 -13.65304 -13.42808 -13.12158 -12.86405 -12.58947 -12.16096 -11.85414 -11.79344 -11.62563 -11.04804 -10.82440 -10.76077 -10.57523 -10.43746 -10.31800 -10.03376 -9.88320 -9.84311 -9.35550 -8.42966 -6.63696 -5.62999 -3.08694 2.65011 2.91624 3.44826 3.51428 3.51908 3.79655 3.89990 4.32710 4.58728 4.67640 4.84328 5.07993 5.33156 5.39013 5.45113 5.53975 5.60228 5.68485 5.82930 5.86508 5.99303 6.04161 6.19933 6.51612 6.75316 6.83094 7.43497 7.73676 7.77517 7.91499 8.32088 8.49412 9.31922 9.95034 10.43846 11.42206 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039647 B = 0.006764 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.071794 B = 4138.695640 C = 4282.508857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.595 5.595 3 C -0.239 4.239 4 H 0.070 0.930 5 C -0.005 4.005 6 N -0.913 5.913 7 Si 0.905 3.095 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.124 3.876 12 C 0.081 3.919 13 H 0.084 0.916 14 O -0.544 6.544 15 C -0.111 4.111 16 C -0.036 4.036 17 C 0.248 3.752 18 N -0.433 5.433 19 C -0.143 4.143 20 C -0.155 4.155 21 H 0.032 0.968 22 H 0.040 0.960 23 H -0.006 1.006 24 H 0.250 0.750 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.363 0.637 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 -14.130 -4.230 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.317 5.317 3 C -0.369 4.369 4 H 0.088 0.912 5 C -0.202 4.202 6 N -0.559 5.559 7 Si 0.736 3.264 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.205 1.205 11 C -0.004 4.004 12 C 0.018 3.982 13 H 0.102 0.898 14 O -0.347 6.347 15 C -0.150 4.150 16 C -0.040 4.040 17 C -0.069 4.069 18 N -0.108 5.108 19 C -0.181 4.181 20 C -0.194 4.194 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.013 0.987 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.208 0.792 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.063 -13.432 -5.616 16.181 hybrid contribution 0.955 0.825 0.441 1.337 sum 8.019 -12.607 -5.175 15.811 Atomic orbital electron populations 1.20801 0.82794 0.95313 0.99386 1.43758 1.01663 1.00563 1.85693 1.19189 0.98205 0.85414 1.34047 0.91231 1.25021 0.98070 0.98509 0.98597 1.70075 1.19698 1.26953 1.39127 0.86239 0.78658 0.84280 0.77251 1.21684 1.21975 1.20543 1.21389 0.96852 0.89401 0.92795 1.22882 0.92738 0.84956 0.97603 0.89767 1.86643 1.28550 1.63516 1.55989 1.21997 1.03025 0.99383 0.90602 1.18350 0.89833 1.01996 0.93787 1.27569 0.93391 0.92847 0.93107 1.81172 1.10466 1.08768 1.10374 1.23183 0.92397 1.00084 1.02465 1.23207 1.02224 0.89740 1.04189 0.94982 0.94114 0.98725 0.93947 0.93903 0.93024 0.79182 0.89943 0.89781 0.88239 0.86953 0.86982 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.18 8.98 59.84 0.54 4.72 16 2 N -0.60 -15.19 2.90 -181.12 -0.53 -15.71 16 3 C -0.24 -6.65 9.21 -15.06 -0.14 -6.79 16 4 H 0.07 1.87 7.58 -52.49 -0.40 1.47 16 5 C 0.00 -0.14 5.10 -17.43 -0.09 -0.22 16 6 N -0.91 -27.45 10.71 55.49 0.59 -26.86 16 7 Si 0.91 22.64 29.57 -169.99 -5.03 17.62 16 8 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 9 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.12 2.41 5.32 -4.04 -0.02 2.39 16 12 C 0.08 1.36 2.73 -26.73 -0.07 1.29 16 13 H 0.08 1.69 6.93 -51.93 -0.36 1.33 16 14 O -0.54 -9.90 12.34 -35.23 -0.43 -10.33 16 15 C -0.11 -1.26 5.07 -26.73 -0.14 -1.39 16 16 C -0.04 -0.40 2.14 -157.29 -0.34 -0.73 16 17 C 0.25 3.80 13.22 -20.80 -0.27 3.52 16 18 N -0.43 -7.90 18.53 42.10 0.78 -7.12 16 19 C -0.14 -1.18 9.86 -26.73 -0.26 -1.45 16 20 C -0.16 -1.16 9.93 -26.73 -0.27 -1.42 16 21 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 22 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 23 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 24 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 27 H 0.36 5.25 9.04 45.56 0.41 5.66 16 28 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -34.04 286.13 -5.38 -39.42 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.02 Total: -1.23 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.06 Total: -0.09 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.85 Total: -49.69 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.43 Total: -10.33 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.04 -5.38 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599280089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.525 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds