Wall clock time and date at job start Mon Mar 30 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 120.00158 * 2 1 4 4 H 1.07999 * 120.00524 * 202.92877 * 3 2 1 5 5 C 1.38817 * 120.00284 * 22.93224 * 3 2 1 6 6 N 1.31621 * 119.99280 * 13.11161 * 5 3 2 7 7 Si 1.86799 * 120.00333 * 193.11387 * 5 3 2 8 8 H 1.48504 * 109.46681 * 89.99767 * 7 5 3 9 9 H 1.48496 * 109.46950 * 209.99713 * 7 5 3 10 10 H 1.48497 * 109.47229 * 329.99900 * 7 5 3 11 11 C 1.46496 * 120.00005 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47506 * 89.99953 * 11 2 1 13 13 H 1.09001 * 109.46617 * 305.00024 * 12 11 2 14 14 O 1.42904 * 109.47264 * 64.99527 * 12 11 2 15 15 C 1.52992 * 109.47676 * 185.00080 * 12 11 2 16 16 C 1.53001 * 109.47333 * 174.99767 * 15 12 11 17 17 C 1.47202 * 115.54836 * 325.58038 * 16 15 12 18 18 N 5.35382 * 88.60337 * 237.43135 * 2 1 3 19 19 C 1.53000 * 117.51684 * 111.28854 * 16 15 12 20 20 C 1.52999 * 117.49762 * 179.91697 * 16 15 12 21 21 H 1.09001 * 109.46634 * 275.12594 * 1 2 3 22 22 H 1.09004 * 109.47196 * 35.12057 * 1 2 3 23 23 H 1.08997 * 109.47197 * 155.12476 * 1 2 3 24 24 H 0.97003 * 119.99324 * 180.02562 * 6 5 3 25 25 H 1.09003 * 109.47484 * 329.99663 * 11 2 1 26 26 H 1.09001 * 109.47601 * 209.99598 * 11 2 1 27 27 H 0.96701 * 113.99010 * 60.00623 * 14 12 11 28 28 H 1.09011 * 109.47047 * 54.99861 * 15 12 11 29 29 H 1.08995 * 109.47257 * 295.00198 * 15 12 11 30 30 H 1.09000 * 117.49391 * 214.96965 * 19 16 15 31 31 H 1.09001 * 117.49573 * 359.97438 * 19 16 15 32 32 H 1.08997 * 117.50412 * 359.97077 * 20 16 15 33 33 H 1.08997 * 117.50228 * 144.99770 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1657 1.2229 -0.3644 5 6 1.5379 2.3406 0.4684 6 7 0.4117 2.2606 1.1449 7 14 2.3130 4.0079 0.1386 8 1 1.7940 4.5502 -1.1428 9 1 1.9730 4.9392 1.2442 10 1 3.7881 3.8597 0.0521 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5061 -1.7541 -1.9823 14 8 3.3209 -0.7716 -2.0818 15 6 3.1060 -3.0932 -1.4457 16 6 3.2471 -3.5880 -2.8866 17 6 2.1675 -3.1880 -3.8039 18 7 1.3345 -2.8812 -4.5106 19 6 4.6607 -3.6935 -3.4625 20 6 3.8847 -4.9620 -3.1024 21 1 -0.3632 0.0918 1.0236 22 1 -0.3634 0.8406 -0.5912 23 1 -0.3633 -0.9323 -0.4323 24 1 -0.0159 3.0675 1.4719 25 1 1.6084 -2.0286 0.5130 26 1 3.1499 -1.1387 0.5133 27 1 4.1836 -0.6804 -1.6546 28 1 2.4851 -3.7893 -0.8817 29 1 4.0917 -3.0302 -0.9850 30 1 4.7912 -3.4667 -4.5206 31 1 5.4904 -3.4099 -2.8149 32 1 4.2040 -5.5132 -2.2180 33 1 3.5048 -5.5697 -3.9236 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599280089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:18 Heat of formation + Delta-G solvation = -0.455268 kcal Electronic energy + Delta-G solvation = -15445.553236 eV Core-core repulsion = 12893.161333 eV Total energy + Delta-G solvation = -2552.391903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09860 -38.23413 -36.66824 -36.34162 -33.31420 -31.53445 -28.17495 -27.65319 -24.50720 -23.42120 -23.25517 -22.07071 -18.83550 -18.16334 -16.97150 -16.68775 -16.39595 -15.74446 -15.41061 -15.27583 -14.99734 -14.57632 -14.33255 -13.82144 -13.75514 -13.20981 -12.90520 -12.82637 -12.74764 -12.50346 -12.24160 -12.20221 -12.00308 -11.82713 -11.70403 -11.50732 -10.97535 -10.71710 -10.43696 -8.68146 -7.77751 -5.25039 1.44907 1.48826 1.55837 1.64790 1.78977 2.53381 2.92047 3.06468 3.33692 3.48056 3.75726 3.85531 4.05110 4.11566 4.27900 4.47789 4.69006 4.76876 4.81963 4.87119 4.97172 5.02264 5.11536 5.15651 5.28443 5.33512 5.42837 5.63326 5.72527 6.37641 6.62326 7.12318 7.22240 7.91314 8.35679 9.25979 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039647 B = 0.006764 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.071794 B = 4138.695640 C = 4282.508857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.616 5.616 3 C -0.236 4.236 4 H 0.079 0.921 5 C -0.068 4.068 6 N -0.948 5.948 7 Si 0.965 3.035 8 H -0.299 1.299 9 H -0.297 1.297 10 H -0.260 1.260 11 C 0.118 3.882 12 C 0.092 3.908 13 H 0.045 0.955 14 O -0.568 6.568 15 C -0.094 4.094 16 C -0.071 4.071 17 C 0.265 3.735 18 N -0.505 5.505 19 C -0.133 4.133 20 C -0.125 4.125 21 H 0.010 0.990 22 H 0.004 0.996 23 H 0.021 0.979 24 H 0.244 0.756 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.379 0.621 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.875 -16.045 -3.950 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.367 4.367 4 H 0.097 0.903 5 C -0.261 4.261 6 N -0.596 5.596 7 Si 0.795 3.205 8 H -0.226 1.226 9 H -0.223 1.223 10 H -0.185 1.185 11 C -0.008 4.008 12 C 0.030 3.970 13 H 0.063 0.937 14 O -0.374 6.374 15 C -0.133 4.133 16 C -0.075 4.075 17 C -0.050 4.050 18 N -0.181 5.181 19 C -0.171 4.171 20 C -0.163 4.163 21 H 0.028 0.972 22 H 0.023 0.977 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.227 0.773 28 H 0.116 0.884 29 H 0.139 0.861 30 H 0.111 0.889 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.996 -15.393 -5.346 19.117 hybrid contribution 0.106 1.330 0.328 1.373 sum 10.102 -14.064 -5.018 18.028 Atomic orbital electron populations 1.20493 0.83844 0.95042 0.97518 1.44041 1.01568 1.02278 1.85929 1.19578 0.98445 0.86440 1.32206 0.90286 1.25806 0.98986 1.01919 0.99396 1.70237 1.21300 1.27155 1.40908 0.85268 0.78845 0.80223 0.76183 1.22643 1.22334 1.18475 1.21707 0.97026 0.87156 0.94911 1.22533 0.91975 0.88066 0.94425 0.93713 1.86602 1.29719 1.64428 1.56684 1.21857 1.04610 0.95512 0.91340 1.18651 0.90141 1.05852 0.92811 1.28556 0.93057 0.91044 0.92357 1.81166 1.12825 1.11330 1.12811 1.23376 0.91042 1.00133 1.02572 1.23396 0.99218 0.88352 1.05300 0.97176 0.97702 0.96090 0.94706 0.92291 0.91483 0.77262 0.88405 0.86141 0.88931 0.84354 0.83786 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.33 8.98 127.77 1.15 10.48 16 2 N -0.62 -31.27 2.90 -726.94 -2.11 -33.38 16 3 C -0.24 -13.06 9.21 84.04 0.77 -12.29 16 4 H 0.08 4.14 7.58 -2.91 -0.02 4.11 16 5 C -0.07 -3.92 5.10 84.86 0.43 -3.49 16 6 N -0.95 -58.49 10.71 21.65 0.23 -58.26 16 7 Si 0.97 46.92 29.57 68.60 2.03 48.94 16 8 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 9 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 C 0.12 4.35 5.32 86.38 0.46 4.81 16 12 C 0.09 2.92 2.73 30.59 0.08 3.01 16 13 H 0.04 1.79 6.93 -2.39 -0.02 1.78 16 14 O -0.57 -19.64 12.34 -148.98 -1.84 -21.48 16 15 C -0.09 -1.76 5.07 30.59 0.15 -1.60 16 16 C -0.07 -1.33 2.14 -53.99 -0.12 -1.44 16 17 C 0.27 7.96 13.22 89.46 1.18 9.14 16 18 N -0.51 -18.92 18.53 19.99 0.37 -18.55 16 19 C -0.13 -1.63 9.86 30.59 0.30 -1.33 16 20 C -0.12 -1.26 9.93 30.59 0.30 -0.96 16 21 H 0.01 0.57 7.34 -2.39 -0.02 0.55 16 22 H 0.00 0.25 7.34 -2.38 -0.02 0.23 16 23 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 24 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 26 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 27 H 0.38 9.84 9.04 -74.06 -0.67 9.17 16 28 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.12 1.42 7.90 -2.39 -0.02 1.40 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.14 1.01 8.05 -2.39 -0.02 0.99 16 32 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -77.30 286.13 3.84 -73.46 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 0.43 Total: 2.93 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.72 Total: 6.33 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -1.51 Total: -110.19 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -1.84 Total: -21.48 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -77.30 3.84 -73.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599280089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.006 kcal (2) G-P(sol) polarization free energy of solvation -77.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds