Wall clock time and date at job start Mon Mar 30 2020 02:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30256 * 125.61919 * 2 1 4 4 C 1.34471 * 108.70321 * 179.97438 * 3 2 1 5 5 C 1.34332 * 107.66888 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.44501 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46881 * 89.99968 * 6 5 4 8 8 C 1.46896 * 111.00178 * 66.04709 * 7 6 5 9 9 C 1.46903 * 110.99849 * 190.00038 * 7 6 5 10 10 H 1.09003 * 109.46808 * 300.00462 * 9 7 6 11 11 C 1.53000 * 109.47120 * 60.00056 * 9 7 6 12 12 C 1.50694 * 109.47066 * 180.02562 * 9 7 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 7 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 O 1.33973 * 125.62201 * 180.28642 * 2 1 3 21 21 H 1.08997 * 109.47370 * 90.02734 * 1 2 3 22 22 H 1.09006 * 109.47210 * 210.02439 * 1 2 3 23 23 H 1.09007 * 109.47526 * 330.02365 * 1 2 3 24 24 H 1.08002 * 126.17060 * 179.97438 * 4 3 2 25 25 H 1.09005 * 109.46912 * 330.00188 * 6 5 4 26 26 H 1.08999 * 109.47231 * 209.99886 * 6 5 4 27 27 H 1.09000 * 109.47187 * 183.95237 * 8 7 6 28 28 H 1.08996 * 109.47272 * 303.95406 * 8 7 6 29 29 H 1.09005 * 109.47145 * 63.94894 * 8 7 6 30 30 H 1.09000 * 109.47156 * 59.99749 * 11 9 7 31 31 H 1.08997 * 109.47359 * 180.02562 * 11 9 7 32 32 H 1.09007 * 109.47356 * 300.00024 * 11 9 7 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0006 5 6 3.5697 -0.6756 0.0004 6 6 4.7937 -1.5549 0.0003 7 7 5.1913 -1.8407 1.3852 8 6 4.1762 -2.6548 2.0670 9 6 6.5069 -2.4926 1.4313 10 1 6.4670 -3.4311 0.8783 11 6 7.5542 -1.5729 0.8002 12 6 6.8800 -2.7702 2.8647 13 1 6.2073 -2.4901 3.6619 14 6 8.0807 -3.3810 3.1587 15 7 8.9001 -3.7218 2.1881 16 14 8.5434 -3.7245 4.9356 17 1 9.2839 -2.5618 5.4879 18 1 7.3114 -3.9509 5.7331 19 1 9.4029 -4.9339 4.9983 20 8 2.2872 -1.0890 -0.0054 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 4.4156 1.3163 0.0003 25 1 5.6081 -1.0439 -0.5134 26 1 4.5696 -2.4896 -0.5137 27 1 4.4615 -2.7928 3.1099 28 1 3.2119 -2.1491 2.0180 29 1 4.1020 -3.6267 1.5789 30 1 7.5941 -0.6344 1.3531 31 1 8.5303 -2.0568 0.8340 32 1 7.2842 -1.3725 -0.2367 33 1 9.7450 -4.1511 2.3950 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600117739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:35 Heat of formation + Delta-G solvation = 28.262451 kcal Electronic energy + Delta-G solvation = -15468.215666 eV Core-core repulsion = 12917.069057 eV Total energy + Delta-G solvation = -2551.146609 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.03861 -37.15595 -34.47558 -33.15176 -31.92925 -29.51254 -28.74697 -25.94316 -24.54165 -23.33764 -21.86020 -20.75603 -19.50659 -16.80011 -16.56729 -16.20658 -15.29870 -14.42802 -14.27614 -13.96244 -13.70430 -13.10035 -13.02297 -12.67546 -12.47837 -12.23784 -11.88312 -11.24108 -11.07049 -10.99941 -10.80639 -10.70472 -10.31977 -10.23259 -10.11976 -9.96485 -8.98264 -8.52394 -8.34065 -7.33612 -6.06500 -4.11265 1.71861 2.89317 2.96337 3.28746 3.35166 3.38455 4.24968 4.37707 4.96591 5.08636 5.24948 5.26552 5.29915 5.38378 5.57068 5.73830 5.88573 6.09784 6.14393 6.27396 6.38907 6.61187 6.71275 6.74513 6.96032 7.03611 7.40708 7.58972 7.76874 7.98050 8.07989 8.22482 8.47462 8.94231 9.53928 11.00351 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051845 B = 0.006168 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.945508 B = 4538.128638 C = 4778.716398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.167 3.833 3 N -0.485 5.485 4 C -0.037 4.037 5 C -0.015 4.015 6 C 0.129 3.871 7 N -0.532 5.532 8 C 0.038 3.962 9 C 0.212 3.788 10 H 0.002 0.998 11 C -0.136 4.136 12 C -0.505 4.505 13 H 0.064 0.936 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.287 1.287 20 O -0.204 6.204 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.182 0.818 25 H 0.109 0.891 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 4.292 -4.764 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.040 4.040 3 N -0.216 5.216 4 C -0.176 4.176 5 C -0.069 4.069 6 C 0.001 3.999 7 N -0.258 5.258 8 C -0.110 4.110 9 C 0.107 3.893 10 H 0.020 0.980 11 C -0.194 4.194 12 C -0.543 4.543 13 H 0.082 0.918 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.213 1.213 20 O -0.091 6.091 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.115 0.885 24 H 0.199 0.801 25 H 0.127 0.873 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.028 0.972 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.582 5.191 -4.539 13.480 hybrid contribution 0.626 -1.603 0.526 1.799 sum -10.956 3.589 -4.013 12.207 Atomic orbital electron populations 1.20150 0.81890 1.04744 1.04132 1.26124 0.96307 0.79140 1.02422 1.70371 1.02382 1.30427 1.18377 1.22956 0.94586 0.93151 1.06868 1.23711 0.82987 0.95757 1.04408 1.20660 0.89209 0.96269 0.93811 1.62230 1.04685 1.48222 1.10635 1.22221 0.93655 0.94234 1.00902 1.19313 0.82089 0.90852 0.97042 0.98043 1.21898 1.02903 0.99549 0.95054 1.21116 1.03470 1.38255 0.91499 0.91783 1.24926 0.96246 0.95531 0.97452 1.69885 1.10484 1.41573 1.31252 0.86487 0.78428 0.77714 0.84723 1.20590 1.19936 1.21290 1.84395 1.17120 1.37675 1.69907 0.89458 0.89678 0.88486 0.80067 0.87268 0.94099 0.90249 0.94085 0.96671 0.94354 0.89356 0.97231 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.17 2.47 8.34 -12.95 -0.11 2.37 16 3 N -0.49 -8.13 11.29 -11.10 -0.13 -8.25 16 4 C -0.04 -0.62 11.80 -17.77 -0.21 -0.83 16 5 C -0.02 -0.27 5.94 -35.68 -0.21 -0.48 16 6 C 0.13 2.37 5.33 -4.97 -0.03 2.35 16 7 N -0.53 -11.51 4.61 -237.73 -1.10 -12.61 16 8 C 0.04 0.79 9.07 60.06 0.54 1.33 16 9 C 0.21 5.25 2.06 -68.87 -0.14 5.11 16 10 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 11 C -0.14 -3.20 8.76 37.16 0.33 -2.87 16 12 C -0.50 -13.62 7.93 -34.44 -0.27 -13.89 16 13 H 0.06 1.74 6.39 -52.49 -0.34 1.40 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.89 -24.96 11.32 55.43 0.63 -24.34 16 16 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 O -0.20 -3.43 10.10 5.36 0.05 -3.38 16 21 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.18 2.73 8.06 -52.49 -0.42 2.30 16 25 H 0.11 1.90 5.83 -51.93 -0.30 1.60 16 26 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.08 1.71 6.23 -51.93 -0.32 1.39 16 28 H 0.04 0.78 6.64 -51.93 -0.34 0.44 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 32 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 273.94 15.07 4.13 4.13 Total: -1.00 -29.90 273.94 -5.71 -35.61 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.46 Total: -1.75 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 0.18 Total: -5.49 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.59 Total: -45.20 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: 0.05 Total: -3.38 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.90 -5.71 -35.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600117739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.872 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds