Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46843 * 110.99661 * 59.21399 * 12 2 1 14 14 C 1.53045 * 109.51997 * 174.16180 * 13 12 2 15 15 C 1.53120 * 109.27889 * 59.17991 * 14 13 12 16 16 O 1.42897 * 109.52203 * 182.44174 * 15 14 13 17 17 C 1.47192 * 109.52273 * 62.24811 * 15 14 13 18 18 N 5.13805 * 63.51364 * 117.67428 * 2 1 3 19 19 C 1.53124 * 109.15780 * 302.34206 * 15 14 13 20 20 C 1.46847 * 110.99889 * 295.00318 * 12 2 1 21 21 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 22 22 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 23 23 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.46162 * 294.17003 * 13 12 2 26 26 H 1.08997 * 109.46937 * 54.14600 * 13 12 2 27 27 H 1.08998 * 109.50067 * 299.23314 * 14 13 12 28 28 H 1.09006 * 109.50074 * 179.11558 * 14 13 12 29 29 H 0.96703 * 113.99567 * 299.68435 * 16 15 14 30 30 H 1.08995 * 109.50175 * 297.71483 * 19 15 14 31 31 H 1.08997 * 109.50339 * 177.59485 * 19 15 14 32 32 H 1.09007 * 109.46071 * 305.84980 * 20 12 2 33 33 H 1.08994 * 109.46325 * 65.83525 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 1.5335 -2.0774 1.2428 14 6 2.1778 -2.8089 2.4227 15 6 1.8223 -2.0825 3.7229 16 8 2.4677 -2.7279 4.8223 17 6 0.3640 -2.1126 3.9203 18 7 -0.7616 -2.1359 4.0727 19 6 2.2966 -0.6293 3.6325 20 6 1.6488 0.0389 2.4176 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7081 1.1608 -3.4844 25 1 0.4501 -2.0784 1.3628 26 1 1.7965 -2.5840 0.3142 27 1 3.2604 -2.8203 2.2964 28 1 1.8048 -3.8323 2.4640 29 1 2.2137 -3.6536 4.9392 30 1 3.3810 -0.6065 3.5254 31 1 2.0084 -0.0955 4.5381 32 1 1.9956 1.0696 2.3422 33 1 0.5649 0.0278 2.5321 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606266275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -17.442561 kcal Electronic energy + Delta-G solvation = -15974.347412 eV Core-core repulsion = 13421.218885 eV Total energy + Delta-G solvation = -2553.128527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72920 -36.87873 -35.73996 -33.57096 -31.50974 -30.67884 -28.05457 -25.32604 -24.11885 -22.92783 -21.53713 -19.64585 -18.01270 -16.28384 -16.00289 -15.32355 -14.95181 -14.42466 -14.04050 -13.86074 -13.30843 -13.10869 -12.74771 -12.52146 -12.05012 -11.94914 -11.82483 -11.45843 -11.31747 -11.04553 -10.81804 -10.74987 -10.65221 -10.35042 -10.17921 -9.87393 -9.74283 -8.90007 -8.42634 -7.26188 -6.04521 -4.08971 2.67293 2.76485 3.28578 3.35803 3.38899 3.81740 4.10298 4.37734 4.79631 4.86758 4.89293 5.27590 5.48103 5.66546 5.75929 5.85049 5.92592 5.98132 6.25026 6.34166 6.49527 6.54851 6.75036 6.82712 7.07744 7.33095 7.42265 7.52778 7.66465 7.77478 8.04652 8.31074 8.51904 8.96414 9.56382 11.02568 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042845 B = 0.007691 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.359193 B = 3639.928140 C = 3817.320878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.043 0.957 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.527 5.527 13 C 0.058 3.942 14 C -0.137 4.137 15 C 0.233 3.767 16 O -0.541 6.541 17 C 0.186 3.814 18 N -0.421 5.421 19 C -0.096 4.096 20 C 0.049 3.951 21 H 0.007 0.993 22 H 0.089 0.911 23 H 0.028 0.972 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.381 0.619 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.279 -5.480 9.992 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.251 5.251 13 C -0.070 4.070 14 C -0.176 4.176 15 C 0.189 3.811 16 O -0.345 6.345 17 C -0.133 4.133 18 N -0.098 5.098 19 C -0.135 4.135 20 C -0.080 4.080 21 H 0.026 0.974 22 H 0.107 0.893 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.324 -4.822 10.128 11.456 hybrid contribution -0.661 -0.929 -0.956 1.488 sum 1.663 -5.751 9.172 10.953 Atomic orbital electron populations 1.22408 1.00870 0.99273 1.00597 1.19307 0.89675 0.94702 0.85733 0.93936 1.21099 1.30778 1.12588 0.89611 0.91784 1.24936 0.95185 0.95091 0.99060 1.69884 1.36880 1.22996 1.23481 0.86525 0.79233 0.79281 0.82544 1.20878 1.21288 1.19760 1.62347 1.59400 1.01125 1.02274 1.21981 0.96075 0.91154 0.97814 1.22391 1.03991 0.98355 0.92839 1.18891 0.77809 0.96676 0.87727 1.86666 1.67815 1.29489 1.50510 1.30255 0.96155 0.93615 0.93251 1.81131 1.12975 1.07739 1.07970 1.21627 1.03185 0.89817 0.98874 1.22065 0.97186 0.98533 0.90173 0.97424 0.89254 0.95341 0.92953 0.95655 0.88636 0.88264 0.91316 0.77102 0.88364 0.90892 0.90035 0.95500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.28 37.15 0.31 -3.84 16 2 C 0.21 5.10 2.35 -68.86 -0.16 4.94 16 3 H 0.04 1.13 8.08 -51.93 -0.42 0.71 16 4 C -0.50 -13.13 7.86 -34.44 -0.27 -13.40 16 5 H 0.06 1.65 6.76 -52.48 -0.35 1.30 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.53 -10.44 4.63 -228.07 -1.06 -11.50 16 13 C 0.06 1.05 4.45 -3.83 -0.02 1.03 16 14 C -0.14 -1.83 5.20 -26.65 -0.14 -1.97 16 15 C 0.23 3.05 1.10 -93.28 -0.10 2.95 16 16 O -0.54 -5.92 12.96 -35.23 -0.46 -6.38 16 17 C 0.19 2.85 11.94 -20.76 -0.25 2.60 16 18 N -0.42 -7.34 18.54 42.16 0.78 -6.56 16 19 C -0.10 -1.32 5.23 -26.65 -0.14 -1.46 16 20 C 0.05 0.84 4.82 -3.83 -0.02 0.82 16 21 H 0.01 0.15 6.65 -51.93 -0.35 -0.19 16 22 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 23 H 0.03 0.67 6.52 -51.93 -0.34 0.33 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.03 0.49 5.79 -51.93 -0.30 0.19 16 26 H 0.10 1.86 6.35 -51.93 -0.33 1.53 16 27 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.38 2.64 9.03 45.56 0.41 3.05 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 33 H 0.03 0.50 5.90 -51.93 -0.31 0.19 16 LS Contribution 264.94 15.07 3.99 3.99 Total: -1.00 -29.23 264.94 -5.56 -34.79 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.54 Total: 1.07 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.88 Total: -6.84 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.35 Total: -42.39 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.46 Total: -6.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.23 -5.56 -34.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606266275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.347 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds