Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46843 * 110.99661 * 59.21399 * 12 2 1 14 14 C 1.53045 * 109.51997 * 174.16180 * 13 12 2 15 15 C 1.53120 * 109.27889 * 59.17991 * 14 13 12 16 16 O 1.42897 * 109.52203 * 182.44174 * 15 14 13 17 17 C 1.47192 * 109.52273 * 62.24811 * 15 14 13 18 18 N 5.13805 * 63.51364 * 117.67428 * 2 1 3 19 19 C 1.53124 * 109.15780 * 302.34206 * 15 14 13 20 20 C 1.46847 * 110.99889 * 295.00318 * 12 2 1 21 21 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 22 22 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 23 23 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.46162 * 294.17003 * 13 12 2 26 26 H 1.08997 * 109.46937 * 54.14600 * 13 12 2 27 27 H 1.08998 * 109.50067 * 299.23314 * 14 13 12 28 28 H 1.09006 * 109.50074 * 179.11558 * 14 13 12 29 29 H 0.96703 * 113.99567 * 299.68435 * 16 15 14 30 30 H 1.08995 * 109.50175 * 297.71483 * 19 15 14 31 31 H 1.08997 * 109.50339 * 177.59485 * 19 15 14 32 32 H 1.09007 * 109.46071 * 305.84980 * 20 12 2 33 33 H 1.08994 * 109.46325 * 65.83525 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 1.5335 -2.0774 1.2428 14 6 2.1778 -2.8089 2.4227 15 6 1.8223 -2.0825 3.7229 16 8 2.4677 -2.7279 4.8223 17 6 0.3640 -2.1126 3.9203 18 7 -0.7616 -2.1359 4.0727 19 6 2.2966 -0.6293 3.6325 20 6 1.6488 0.0389 2.4176 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7081 1.1608 -3.4844 25 1 0.4501 -2.0784 1.3628 26 1 1.7965 -2.5840 0.3142 27 1 3.2604 -2.8203 2.2964 28 1 1.8048 -3.8323 2.4640 29 1 2.2137 -3.6536 4.9392 30 1 3.3810 -0.6065 3.5254 31 1 2.0084 -0.0955 4.5381 32 1 1.9956 1.0696 2.3422 33 1 0.5649 0.0278 2.5321 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606266275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -39.680327 kcal Electronic energy + Delta-G solvation = -15975.311714 eV Core-core repulsion = 13421.218885 eV Total energy + Delta-G solvation = -2554.092829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.97335 -38.28599 -36.91359 -35.26424 -33.13696 -31.94136 -29.74165 -27.34712 -25.50688 -24.22568 -22.99629 -21.24575 -19.08490 -18.19541 -17.38589 -16.78739 -16.31608 -15.97832 -15.53682 -15.14996 -14.72760 -14.55441 -14.31414 -13.89500 -13.62083 -13.31326 -13.15923 -13.02887 -12.85823 -12.65945 -12.44868 -12.30893 -12.15346 -11.96217 -11.85836 -11.46120 -11.13064 -10.79078 -10.47897 -8.90394 -8.08956 -6.19659 1.44947 1.46469 1.50392 1.56576 1.56722 2.44900 2.68727 3.11942 3.21120 3.35985 3.69786 3.75992 4.24174 4.37317 4.54467 4.61157 4.66084 4.78037 4.80223 4.87293 4.98833 5.06555 5.11841 5.21327 5.30999 5.54449 5.70459 5.78217 6.19342 6.34405 6.45294 6.65057 6.72131 6.94079 7.49732 8.97577 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042845 B = 0.007691 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.359193 B = 3639.928140 C = 3817.320878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.012 0.988 4 C -0.511 4.511 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.528 5.528 13 C 0.058 3.942 14 C -0.126 4.126 15 C 0.245 3.755 16 O -0.534 6.534 17 C 0.203 3.797 18 N -0.464 5.464 19 C -0.091 4.091 20 C 0.049 3.951 21 H 0.016 0.984 22 H 0.061 0.939 23 H 0.024 0.976 24 H 0.260 0.740 25 H 0.006 0.994 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.402 0.598 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 -6.988 11.074 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.030 0.970 4 C -0.549 4.549 5 H 0.084 0.916 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.252 5.252 13 C -0.070 4.070 14 C -0.165 4.165 15 C 0.200 3.800 16 O -0.341 6.341 17 C -0.115 4.115 18 N -0.142 5.142 19 C -0.130 4.130 20 C -0.080 4.080 21 H 0.035 0.965 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.024 0.976 26 H 0.096 0.904 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.253 0.747 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 3.769 -6.362 11.240 13.454 hybrid contribution -1.108 -0.458 -1.237 1.723 sum 2.661 -6.820 10.003 12.396 Atomic orbital electron populations 1.22206 1.01195 0.98575 0.99604 1.19052 0.89235 0.93444 0.87463 0.96975 1.21408 1.30437 1.12541 0.90529 0.91581 1.25726 0.95469 0.95788 1.02017 1.70024 1.38072 1.24393 1.23933 0.85538 0.78990 0.78090 0.78919 1.20580 1.21368 1.18736 1.62267 1.59158 1.01987 1.01784 1.21978 0.95350 0.90302 0.99375 1.22340 1.04471 0.99113 0.90590 1.18732 0.76362 0.96559 0.88345 1.86649 1.67056 1.31286 1.49064 1.30761 0.96553 0.92331 0.91905 1.81151 1.14410 1.09135 1.09507 1.21571 1.03658 0.90207 0.97537 1.22118 0.96497 0.98901 0.90465 0.96497 0.92022 0.95727 0.93120 0.97563 0.90408 0.86822 0.88448 0.74651 0.86895 0.89119 0.90145 0.97224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.74 8.28 71.98 0.60 -7.14 16 2 C 0.22 10.57 2.35 44.17 0.10 10.67 16 3 H 0.01 0.67 8.08 -2.38 -0.02 0.65 16 4 C -0.51 -26.90 7.86 25.60 0.20 -26.70 16 5 H 0.07 3.38 6.76 -2.91 -0.02 3.36 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 8 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 12 N -0.53 -20.65 4.63 -875.48 -4.06 -24.71 16 13 C 0.06 2.04 4.45 86.33 0.38 2.42 16 14 C -0.13 -2.97 5.20 30.65 0.16 -2.81 16 15 C 0.24 5.60 1.10 -12.52 -0.01 5.59 16 16 O -0.53 -9.28 12.96 -148.98 -1.93 -11.21 16 17 C 0.20 5.80 11.94 89.44 1.07 6.87 16 18 N -0.46 -15.72 18.54 20.00 0.37 -15.35 16 19 C -0.09 -2.24 5.23 30.65 0.16 -2.08 16 20 C 0.05 1.62 4.82 86.33 0.42 2.03 16 21 H 0.02 0.75 6.65 -2.39 -0.02 0.74 16 22 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 23 H 0.02 1.18 6.52 -2.38 -0.02 1.17 16 24 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.01 0.24 5.79 -2.38 -0.01 0.23 16 26 H 0.08 2.97 6.35 -2.39 -0.02 2.96 16 27 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.40 3.62 9.03 -74.06 -0.67 2.95 16 30 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.65 8.08 -2.38 -0.02 2.63 16 33 H 0.01 0.35 5.90 -2.39 -0.01 0.34 16 Total: -1.00 -63.60 264.94 0.63 -62.97 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.46 Total: 6.37 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 3.52 Total: -10.25 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -3.44 Total: -92.57 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.93 Total: -11.21 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -63.60 0.63 -62.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606266275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.289 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds