Wall clock time and date at job start Mon Mar 30 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46654 * 2 1 4 4 C 1.50696 * 109.47483 * 119.99932 * 2 1 3 5 5 H 1.08003 * 120.00236 * 119.99933 * 4 2 1 6 6 C 1.37879 * 120.00381 * 300.00624 * 4 2 1 7 7 N 1.31513 * 119.99719 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00240 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47214 * 59.99863 * 8 6 4 10 10 H 1.48502 * 109.47179 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46924 * 299.99963 * 8 6 4 12 12 N 1.46895 * 109.47435 * 240.00637 * 2 1 3 13 13 C 1.46850 * 111.00333 * 59.99578 * 12 2 1 14 14 C 1.53036 * 109.52384 * 174.16360 * 13 12 2 15 15 C 1.53120 * 109.27700 * 59.18090 * 14 13 12 16 16 O 1.42906 * 109.51802 * 182.43975 * 15 14 13 17 17 C 1.47195 * 109.52385 * 62.25240 * 15 14 13 18 18 N 5.13798 * 63.48723 * 238.30892 * 2 1 3 19 19 C 1.53120 * 109.15972 * 302.34018 * 15 14 13 20 20 C 1.46850 * 110.99945 * 295.78510 * 12 2 1 21 21 H 1.08999 * 109.47351 * 299.99238 * 1 2 3 22 22 H 1.08994 * 109.47741 * 60.00041 * 1 2 3 23 23 H 1.09004 * 109.46654 * 179.97438 * 1 2 3 24 24 H 0.97004 * 120.00360 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.45831 * 54.14149 * 13 12 2 26 26 H 1.08998 * 109.45719 * 294.17998 * 13 12 2 27 27 H 1.08998 * 109.49982 * 179.12006 * 14 13 12 28 28 H 1.08992 * 109.50379 * 299.23548 * 14 13 12 29 29 H 0.96697 * 113.99902 * 179.97438 * 16 15 14 30 30 H 1.09000 * 109.49976 * 177.59581 * 19 15 14 31 31 H 1.08997 * 109.50809 * 297.71813 * 19 15 14 32 32 H 1.09007 * 109.46080 * 65.82377 * 20 12 2 33 33 H 1.09001 * 109.45527 * 305.85274 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1209 4.0081 10 1 1.8270 -0.4201 5.2205 11 1 1.8261 -2.5203 4.0076 12 7 2.0197 -0.6923 -1.1994 13 6 1.5488 -0.0264 -2.4207 14 6 2.1936 -0.6840 -3.6429 15 6 1.8216 -2.1690 -3.6731 16 8 2.4672 -2.8005 -4.7806 17 6 0.3625 -2.3080 -3.8081 18 7 -0.7636 -2.4153 -3.9121 19 6 2.2802 -2.8286 -2.3695 20 6 1.6329 -2.1089 -1.1842 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7094 1.1616 3.4845 25 1 1.8233 1.0279 -2.3882 26 1 0.4648 -0.1173 -2.4889 27 1 1.8319 -0.1997 -4.5499 28 1 3.2770 -0.5814 -3.5822 29 1 2.2760 -3.7450 -4.8610 30 1 1.9802 -3.8765 -2.3668 31 1 3.3650 -2.7597 -2.2887 32 1 0.5484 -2.1900 -1.2583 33 1 1.9686 -2.5669 -0.2538 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606266276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:30 Heat of formation + Delta-G solvation = -16.664336 kcal Electronic energy + Delta-G solvation = -15985.020324 eV Core-core repulsion = 13431.925543 eV Total energy + Delta-G solvation = -2553.094780 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.72605 -36.88260 -35.73480 -33.56587 -31.51009 -30.68206 -28.04307 -25.35963 -24.12193 -22.87773 -21.54611 -19.64679 -18.00714 -16.28831 -16.00410 -15.30979 -14.95877 -14.41193 -14.04668 -13.84750 -13.32924 -13.10102 -12.73291 -12.52010 -12.05138 -11.93889 -11.82783 -11.46093 -11.30199 -11.02324 -10.83426 -10.71772 -10.68570 -10.36929 -10.18727 -9.84699 -9.73229 -8.88635 -8.42953 -7.25777 -6.04993 -4.09776 2.67980 2.77196 3.29830 3.34832 3.36784 3.82373 4.10783 4.37283 4.80275 4.87463 4.89807 5.27108 5.48946 5.67269 5.76696 5.85895 5.93399 5.98804 6.25426 6.34836 6.50858 6.56411 6.75723 6.83362 7.07854 7.33576 7.44789 7.53455 7.67032 7.75637 8.03332 8.31198 8.51904 8.95167 9.55552 11.02029 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042228 B = 0.007750 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.910107 B = 3612.056194 C = 3784.825880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.044 0.956 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.528 5.528 13 C 0.049 3.951 14 C -0.096 4.096 15 C 0.233 3.767 16 O -0.541 6.541 17 C 0.187 3.813 18 N -0.421 5.421 19 C -0.137 4.137 20 C 0.058 3.942 21 H 0.089 0.911 22 H 0.008 0.992 23 H 0.026 0.974 24 H 0.261 0.739 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.381 0.619 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.025 0.975 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -5.410 -9.933 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.252 5.252 13 C -0.080 4.080 14 C -0.135 4.135 15 C 0.189 3.811 16 O -0.345 6.345 17 C -0.133 4.133 18 N -0.098 5.098 19 C -0.176 4.176 20 C -0.071 4.071 21 H 0.107 0.893 22 H 0.027 0.973 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.229 0.771 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.043 0.957 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.355 -4.823 -10.043 11.387 hybrid contribution -0.603 -0.993 1.002 1.534 sum 1.752 -5.816 -9.041 10.892 Atomic orbital electron populations 1.22407 1.00886 0.99205 1.00640 1.19295 0.89663 0.94772 0.85662 0.93864 1.21087 1.30973 1.12652 0.89705 0.91786 1.24933 0.95125 0.95082 0.99050 1.69873 1.36750 1.22920 1.23609 0.86586 0.79253 0.79581 0.82136 1.20142 1.21390 1.20383 1.62349 1.59309 1.01208 1.02329 1.22065 0.96756 0.99046 0.90109 1.21626 1.03670 0.89301 0.98913 1.18895 0.77695 0.96658 0.87861 1.86665 1.71335 1.27408 1.49091 1.30250 0.96190 0.93606 0.93224 1.81127 1.12947 1.07828 1.07914 1.22392 1.03572 0.98806 0.92812 1.22000 0.96710 0.90552 0.97824 0.89270 0.97298 0.95476 0.92875 0.90074 0.95385 0.90902 0.88389 0.77107 0.91327 0.88286 0.95722 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.28 37.16 0.31 -3.84 16 2 C 0.21 5.11 2.41 -68.87 -0.17 4.94 16 3 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 4 C -0.51 -13.20 7.86 -34.44 -0.27 -13.47 16 5 H 0.06 1.64 6.40 -52.48 -0.34 1.30 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.53 -10.46 4.67 -228.08 -1.07 -11.53 16 13 C 0.05 0.84 4.68 -3.83 -0.02 0.82 16 14 C -0.10 -1.32 5.23 -26.65 -0.14 -1.46 16 15 C 0.23 3.07 1.10 -93.29 -0.10 2.96 16 16 O -0.54 -5.95 12.96 -35.23 -0.46 -6.40 16 17 C 0.19 2.87 11.95 -20.76 -0.25 2.62 16 18 N -0.42 -7.37 18.54 42.15 0.78 -6.59 16 19 C -0.14 -1.84 5.20 -26.65 -0.14 -1.98 16 20 C 0.06 1.04 4.54 -3.83 -0.02 1.03 16 21 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 22 H 0.01 0.18 6.54 -51.93 -0.34 -0.16 16 23 H 0.03 0.64 6.63 -51.93 -0.34 0.30 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 25 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 26 H 0.03 0.52 5.80 -51.93 -0.30 0.22 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.38 2.66 9.03 45.56 0.41 3.07 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.49 5.88 -51.92 -0.31 0.18 16 33 H 0.10 1.91 6.02 -51.93 -0.31 1.60 16 LS Contribution 264.41 15.07 3.98 3.98 Total: -1.00 -29.16 264.41 -5.55 -34.71 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.51 Total: 1.25 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.89 Total: -6.87 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.34 Total: -42.41 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.46 Total: -6.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.16 -5.55 -34.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606266276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.043 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds