Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46654 * 2 1 4 4 C 1.50696 * 109.47483 * 119.99932 * 2 1 3 5 5 H 1.08003 * 120.00236 * 119.99933 * 4 2 1 6 6 C 1.37879 * 120.00381 * 300.00624 * 4 2 1 7 7 N 1.31513 * 119.99719 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00240 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47214 * 59.99863 * 8 6 4 10 10 H 1.48502 * 109.47179 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46924 * 299.99963 * 8 6 4 12 12 N 1.46895 * 109.47435 * 240.00637 * 2 1 3 13 13 C 1.46850 * 111.00333 * 59.99578 * 12 2 1 14 14 C 1.53036 * 109.52384 * 174.16360 * 13 12 2 15 15 C 1.53120 * 109.27700 * 59.18090 * 14 13 12 16 16 O 1.42906 * 109.51802 * 182.43975 * 15 14 13 17 17 C 1.47195 * 109.52385 * 62.25240 * 15 14 13 18 18 N 5.13798 * 63.48723 * 238.30892 * 2 1 3 19 19 C 1.53120 * 109.15972 * 302.34018 * 15 14 13 20 20 C 1.46850 * 110.99945 * 295.78510 * 12 2 1 21 21 H 1.08999 * 109.47351 * 299.99238 * 1 2 3 22 22 H 1.08994 * 109.47741 * 60.00041 * 1 2 3 23 23 H 1.09004 * 109.46654 * 179.97438 * 1 2 3 24 24 H 0.97004 * 120.00360 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.45831 * 54.14149 * 13 12 2 26 26 H 1.08998 * 109.45719 * 294.17998 * 13 12 2 27 27 H 1.08998 * 109.49982 * 179.12006 * 14 13 12 28 28 H 1.08992 * 109.50379 * 299.23548 * 14 13 12 29 29 H 0.96697 * 113.99902 * 179.97438 * 16 15 14 30 30 H 1.09000 * 109.49976 * 177.59581 * 19 15 14 31 31 H 1.08997 * 109.50809 * 297.71813 * 19 15 14 32 32 H 1.09007 * 109.46080 * 65.82377 * 20 12 2 33 33 H 1.09001 * 109.45527 * 305.85274 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1209 4.0081 10 1 1.8270 -0.4201 5.2205 11 1 1.8261 -2.5203 4.0076 12 7 2.0197 -0.6923 -1.1994 13 6 1.5488 -0.0264 -2.4207 14 6 2.1936 -0.6840 -3.6429 15 6 1.8216 -2.1690 -3.6731 16 8 2.4672 -2.8005 -4.7806 17 6 0.3625 -2.3080 -3.8081 18 7 -0.7636 -2.4153 -3.9121 19 6 2.2802 -2.8286 -2.3695 20 6 1.6329 -2.1089 -1.1842 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7094 1.1616 3.4845 25 1 1.8233 1.0279 -2.3882 26 1 0.4648 -0.1173 -2.4889 27 1 1.8319 -0.1997 -4.5499 28 1 3.2770 -0.5814 -3.5822 29 1 2.2760 -3.7450 -4.8610 30 1 1.9802 -3.8765 -2.3668 31 1 3.3650 -2.7597 -2.2887 32 1 0.5484 -2.1900 -1.2583 33 1 1.9686 -2.5669 -0.2538 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606266276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = -38.892680 kcal Electronic energy + Delta-G solvation = -15985.984217 eV Core-core repulsion = 13431.925543 eV Total energy + Delta-G solvation = -2554.058674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.97528 -38.29278 -36.91383 -35.25741 -33.13672 -31.95272 -29.73145 -27.36623 -25.51316 -24.19140 -23.00714 -21.24800 -19.08660 -18.18853 -17.39844 -16.78483 -16.30625 -15.97834 -15.53109 -15.15501 -14.77022 -14.51615 -14.31855 -13.89435 -13.61700 -13.32309 -13.17471 -13.01539 -12.84278 -12.65577 -12.44502 -12.33176 -12.13974 -11.95887 -11.85817 -11.45868 -11.13837 -10.76426 -10.47449 -8.90287 -8.09211 -6.20115 1.45844 1.46982 1.50525 1.54115 1.56872 2.44598 2.68915 3.12054 3.20859 3.36347 3.70062 3.76290 4.24698 4.37945 4.54907 4.61782 4.66659 4.78187 4.80771 4.87419 4.98846 5.06417 5.13092 5.21495 5.31112 5.56470 5.71383 5.77244 6.17292 6.34532 6.44631 6.65058 6.72745 6.93738 7.49224 8.97172 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042228 B = 0.007750 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.910107 B = 3612.056194 C = 3784.825880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.013 0.987 4 C -0.515 4.515 5 H 0.068 0.932 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.290 1.290 11 H -0.272 1.272 12 N -0.528 5.528 13 C 0.048 3.952 14 C -0.091 4.091 15 C 0.245 3.755 16 O -0.534 6.534 17 C 0.203 3.797 18 N -0.464 5.464 19 C -0.126 4.126 20 C 0.058 3.942 21 H 0.061 0.939 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.260 0.740 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.402 0.598 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.004 0.996 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -6.870 -11.046 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.031 0.969 4 C -0.553 4.553 5 H 0.086 0.914 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.216 1.216 11 H -0.197 1.197 12 N -0.252 5.252 13 C -0.080 4.080 14 C -0.130 4.130 15 C 0.200 3.800 16 O -0.341 6.341 17 C -0.115 4.115 18 N -0.142 5.142 19 C -0.165 4.165 20 C -0.070 4.070 21 H 0.080 0.920 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.029 0.971 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.253 0.747 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.023 0.977 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.831 -6.315 -11.186 13.404 hybrid contribution -1.057 -0.538 1.290 1.753 sum 2.774 -6.853 -9.896 12.352 Atomic orbital electron populations 1.22204 1.01216 0.98408 0.99737 1.19043 0.89221 0.93538 0.87392 0.96899 1.21419 1.30629 1.12658 0.90594 0.91432 1.25727 0.95415 0.95784 1.02017 1.70015 1.37974 1.24330 1.24010 0.85601 0.78938 0.78559 0.78482 1.19339 1.21558 1.19695 1.62269 1.59085 1.02067 1.01778 1.22119 0.96003 0.99472 0.90412 1.21571 1.04242 0.89642 0.97525 1.18739 0.76254 0.96527 0.88490 1.86649 1.70500 1.29319 1.47589 1.30763 0.96603 0.92323 0.91859 1.81147 1.14389 1.09249 1.09445 1.22340 1.03965 0.99681 0.90532 1.21991 0.95881 0.89708 0.99458 0.92026 0.96212 0.96047 0.93099 0.90131 0.97140 0.89125 0.86878 0.74660 0.88497 0.86784 0.97749 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.73 8.28 71.98 0.60 -7.14 16 2 C 0.22 10.57 2.41 44.17 0.11 10.67 16 3 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.51 -27.07 7.86 25.60 0.20 -26.87 16 5 H 0.07 3.43 6.40 -2.91 -0.02 3.42 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -52.71 11.32 21.45 0.24 -52.47 16 8 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 N -0.53 -20.66 4.67 -875.52 -4.09 -24.75 16 13 C 0.05 1.61 4.68 86.32 0.40 2.01 16 14 C -0.09 -2.24 5.23 30.65 0.16 -2.08 16 15 C 0.24 5.62 1.10 -12.52 -0.01 5.61 16 16 O -0.53 -9.31 12.96 -148.98 -1.93 -11.24 16 17 C 0.20 5.83 11.95 89.44 1.07 6.90 16 18 N -0.46 -15.81 18.54 20.00 0.37 -15.44 16 19 C -0.13 -2.99 5.20 30.65 0.16 -2.83 16 20 C 0.06 2.04 4.54 86.32 0.39 2.43 16 21 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 22 H 0.02 0.88 6.54 -2.39 -0.02 0.87 16 23 H 0.02 1.03 6.63 -2.39 -0.02 1.01 16 24 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 26 H 0.01 0.39 5.80 -2.39 -0.01 0.37 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.40 3.66 9.03 -74.06 -0.67 2.99 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.00 0.17 5.88 -2.38 -0.01 0.16 16 33 H 0.08 3.06 6.02 -2.39 -0.01 3.05 16 Total: -1.00 -63.53 264.41 0.60 -62.93 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.46 Total: 6.68 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 3.52 Total: -10.35 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.48 Total: -92.66 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.93 Total: -11.24 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -63.53 0.60 -62.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606266276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.037 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds