Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46953 * 2 1 4 4 N 1.46502 * 109.46889 * 185.15340 * 3 2 1 5 5 C 1.36932 * 119.99977 * 84.83098 * 4 3 2 6 6 H 1.08002 * 120.00444 * 322.21579 * 5 4 3 7 7 C 1.38820 * 119.99812 * 142.21656 * 5 4 3 8 8 N 1.31622 * 119.99789 * 158.29932 * 7 5 4 9 9 Si 1.86793 * 119.99903 * 338.29753 * 7 5 4 10 10 H 1.48503 * 109.47018 * 95.31244 * 9 7 5 11 11 H 1.48502 * 109.47283 * 215.31084 * 9 7 5 12 12 H 1.48502 * 109.47504 * 335.31128 * 9 7 5 13 13 C 1.46500 * 120.00004 * 264.83527 * 4 3 2 14 14 C 1.50706 * 109.47218 * 89.99817 * 13 4 3 15 15 C 1.35444 * 126.77428 * 90.00354 * 14 13 4 16 16 C 1.41380 * 103.98634 * 179.97438 * 15 14 13 17 17 C 1.50701 * 126.80601 * 180.02562 * 16 15 14 18 18 N 1.30178 * 106.39586 * 359.97438 * 16 15 14 19 19 O 1.20921 * 111.59984 * 359.72679 * 18 16 15 20 20 H 1.09001 * 109.47202 * 64.86641 * 1 2 3 21 21 H 1.09001 * 109.47281 * 184.87185 * 1 2 3 22 22 H 1.09001 * 109.46884 * 304.86738 * 1 2 3 23 23 H 1.09008 * 109.46871 * 240.00235 * 2 1 3 24 24 H 1.08995 * 109.47410 * 120.00176 * 2 1 3 25 25 H 1.08997 * 109.46872 * 65.15492 * 3 2 1 26 26 H 1.08997 * 109.47396 * 305.14908 * 3 2 1 27 27 H 0.97001 * 119.99542 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.47317 * 210.00227 * 13 4 3 29 29 H 1.09001 * 109.47363 * 329.99915 * 13 4 3 30 30 H 1.08002 * 128.01135 * 359.97438 * 15 14 13 31 31 H 1.08996 * 109.46954 * 89.99721 * 17 16 15 32 32 H 1.09001 * 109.47290 * 210.00061 * 17 16 15 33 33 H 1.08996 * 109.46725 * 329.99927 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4997 1.4444 -0.1241 5 6 4.0818 1.3738 -1.3615 6 1 3.6459 0.7509 -2.1286 7 6 5.2321 2.1029 -1.6300 8 7 6.0265 1.7400 -2.6148 9 14 5.6527 3.5991 -0.5939 10 1 6.5897 3.2042 0.4884 11 1 6.2918 4.6305 -1.4501 12 1 4.4109 4.1523 0.0039 13 6 4.3367 1.5216 1.0758 14 6 4.6328 0.1298 1.5723 15 6 5.6824 -0.6505 1.2204 16 6 5.4894 -1.8381 1.9627 17 6 6.3711 -3.0602 1.9563 18 7 4.3996 -1.6664 2.6538 19 8 3.9129 -0.5776 2.4544 20 1 -0.3634 0.4365 -0.9304 21 1 -0.3634 -1.0240 0.0873 22 1 -0.3633 0.5875 0.8432 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.7540 1.9290 0.9325 26 1 1.6033 1.9823 -0.8402 27 1 6.8301 2.2497 -2.8026 28 1 5.2715 2.0279 0.8348 29 1 3.8107 2.0795 1.8505 30 1 6.4819 -0.4191 0.5321 31 1 7.1348 -2.9613 2.7277 32 1 5.7667 -3.9454 2.1547 33 1 6.8494 -3.1579 0.9818 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 71.631664 kcal Electronic energy + Delta-G solvation = -15900.943621 eV Core-core repulsion = 13351.677642 eV Total energy + Delta-G solvation = -2549.265979 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.15809 -36.69362 -34.15580 -33.15891 -32.01744 -30.58525 -28.21804 -26.49675 -25.75828 -22.39971 -22.12180 -20.30940 -19.61411 -17.30517 -16.84139 -16.10815 -15.51793 -14.59160 -14.16218 -13.94558 -13.20517 -13.06412 -12.94369 -12.69589 -12.49672 -12.36509 -12.03409 -11.95971 -11.18632 -10.89163 -10.77563 -10.71352 -10.59158 -10.08164 -9.94674 -9.75507 -9.38366 -8.66183 -8.60078 -7.04764 -6.13912 -3.58092 2.17609 2.89953 3.18166 3.36887 3.40067 3.86600 4.37221 4.75411 4.89411 5.06767 5.23626 5.61637 5.65227 5.70159 5.72630 5.80564 5.87702 5.94726 6.09223 6.11788 6.19472 6.36969 6.39637 6.48770 6.50488 6.52967 6.79253 6.83879 7.04927 7.88206 8.26129 8.80309 8.93567 9.53855 9.92204 11.00754 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.012911 C = 0.009155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.656834 B = 2168.245945 C = 3057.823177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.589 5.589 5 C -0.272 4.272 6 H 0.081 0.919 7 C 0.041 3.959 8 N -0.890 5.890 9 Si 0.868 3.132 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.264 1.264 13 C 0.203 3.797 14 C -0.021 4.021 15 C -0.228 4.228 16 C 0.007 3.993 17 C -0.069 4.069 18 N -0.388 5.388 19 O 0.083 5.917 20 H 0.050 0.950 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.266 0.734 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.165 0.835 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -2.624 7.567 8.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.023 3.977 4 N -0.309 5.309 5 C -0.401 4.401 6 H 0.099 0.901 7 C -0.161 4.161 8 N -0.530 5.530 9 Si 0.697 3.303 10 H -0.210 1.210 11 H -0.224 1.224 12 H -0.188 1.188 13 C 0.075 3.925 14 C -0.087 4.087 15 C -0.251 4.251 16 C -0.152 4.152 17 C -0.127 4.127 18 N -0.097 5.097 19 O 0.021 5.979 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.183 0.817 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.322 -3.299 8.282 9.514 hybrid contribution 1.047 0.913 -0.221 1.407 sum -2.275 -2.386 8.061 8.709 Atomic orbital electron populations 1.21701 0.96926 1.00612 1.01092 1.22060 0.94201 1.00267 1.01932 1.21038 0.83207 0.94025 0.99465 1.44238 1.00512 1.84605 1.01574 1.18754 1.09462 1.23190 0.88664 0.90143 1.25470 0.96876 0.97557 0.96167 1.69874 1.12393 1.38830 1.31894 0.87057 0.78544 0.85020 0.79662 1.20992 1.22363 1.18808 1.20135 0.97445 0.85571 0.89334 1.26383 0.91158 0.99872 0.91310 1.22386 1.03222 0.93711 1.05805 1.23513 0.95482 0.98541 0.97623 1.20061 0.97125 0.92406 1.03077 1.73692 1.11993 1.00791 1.23194 1.84724 1.44946 1.19677 1.48587 0.93090 0.93691 0.93285 0.92060 0.92851 0.93937 0.92330 0.92437 0.89608 0.91640 0.81725 0.90874 0.91236 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.65 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 2.86 5.72 -4.04 -0.02 2.83 16 4 N -0.59 -13.36 2.07 -174.60 -0.36 -13.72 16 5 C -0.27 -7.20 9.92 -15.06 -0.15 -7.35 16 6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.04 1.11 5.31 -17.43 -0.09 1.02 16 8 N -0.89 -25.68 13.97 55.49 0.78 -24.90 16 9 Si 0.87 20.47 25.01 -169.99 -4.25 16.22 16 10 H -0.28 -6.40 6.67 56.52 0.38 -6.02 16 11 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.03 7.11 56.52 0.40 -5.62 16 13 C 0.20 4.26 5.10 -5.19 -0.03 4.24 16 14 C -0.02 -0.43 7.05 -35.30 -0.25 -0.68 16 15 C -0.23 -4.66 11.06 -39.38 -0.44 -5.09 16 16 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 17 C -0.07 -0.97 10.47 36.01 0.38 -0.59 16 18 N -0.39 -7.76 12.07 33.42 0.40 -7.35 16 19 O 0.08 1.68 10.51 17.18 0.18 1.86 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 24 H 0.05 1.03 7.42 -51.93 -0.39 0.64 16 25 H 0.04 0.73 7.83 -51.93 -0.41 0.33 16 26 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.09 1.91 3.24 -51.93 -0.17 1.74 16 29 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 30 H 0.17 3.38 8.06 -52.49 -0.42 2.96 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 278.48 15.07 4.20 4.20 Total: -1.00 -28.89 278.48 -4.81 -33.70 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.75 Total: 0.66 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.00 Total: -10.67 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.82 Total: -45.97 kcal Atomic # 8 Polarization: 1.68 SS G_CDS: 0.18 Total: 1.86 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.25 Total: 16.22 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.89 -4.81 -33.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.334 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds