Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46953 * 2 1 4 4 N 1.46502 * 109.46889 * 185.15340 * 3 2 1 5 5 C 1.36932 * 119.99977 * 84.83098 * 4 3 2 6 6 H 1.08002 * 120.00444 * 322.21579 * 5 4 3 7 7 C 1.38820 * 119.99812 * 142.21656 * 5 4 3 8 8 N 1.31622 * 119.99789 * 158.29932 * 7 5 4 9 9 Si 1.86793 * 119.99903 * 338.29753 * 7 5 4 10 10 H 1.48503 * 109.47018 * 95.31244 * 9 7 5 11 11 H 1.48502 * 109.47283 * 215.31084 * 9 7 5 12 12 H 1.48502 * 109.47504 * 335.31128 * 9 7 5 13 13 C 1.46500 * 120.00004 * 264.83527 * 4 3 2 14 14 C 1.50706 * 109.47218 * 89.99817 * 13 4 3 15 15 C 1.35444 * 126.77428 * 90.00354 * 14 13 4 16 16 C 1.41380 * 103.98634 * 179.97438 * 15 14 13 17 17 C 1.50701 * 126.80601 * 180.02562 * 16 15 14 18 18 N 1.30178 * 106.39586 * 359.97438 * 16 15 14 19 19 O 1.20921 * 111.59984 * 359.72679 * 18 16 15 20 20 H 1.09001 * 109.47202 * 64.86641 * 1 2 3 21 21 H 1.09001 * 109.47281 * 184.87185 * 1 2 3 22 22 H 1.09001 * 109.46884 * 304.86738 * 1 2 3 23 23 H 1.09008 * 109.46871 * 240.00235 * 2 1 3 24 24 H 1.08995 * 109.47410 * 120.00176 * 2 1 3 25 25 H 1.08997 * 109.46872 * 65.15492 * 3 2 1 26 26 H 1.08997 * 109.47396 * 305.14908 * 3 2 1 27 27 H 0.97001 * 119.99542 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.47317 * 210.00227 * 13 4 3 29 29 H 1.09001 * 109.47363 * 329.99915 * 13 4 3 30 30 H 1.08002 * 128.01135 * 359.97438 * 15 14 13 31 31 H 1.08996 * 109.46954 * 89.99721 * 17 16 15 32 32 H 1.09001 * 109.47290 * 210.00061 * 17 16 15 33 33 H 1.08996 * 109.46725 * 329.99927 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4997 1.4444 -0.1241 5 6 4.0818 1.3738 -1.3615 6 1 3.6459 0.7509 -2.1286 7 6 5.2321 2.1029 -1.6300 8 7 6.0265 1.7400 -2.6148 9 14 5.6527 3.5991 -0.5939 10 1 6.5897 3.2042 0.4884 11 1 6.2918 4.6305 -1.4501 12 1 4.4109 4.1523 0.0039 13 6 4.3367 1.5216 1.0758 14 6 4.6328 0.1298 1.5723 15 6 5.6824 -0.6505 1.2204 16 6 5.4894 -1.8381 1.9627 17 6 6.3711 -3.0602 1.9563 18 7 4.3996 -1.6664 2.6538 19 8 3.9129 -0.5776 2.4544 20 1 -0.3634 0.4365 -0.9304 21 1 -0.3634 -1.0240 0.0873 22 1 -0.3633 0.5875 0.8432 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.7540 1.9290 0.9325 26 1 1.6033 1.9823 -0.8402 27 1 6.8301 2.2497 -2.8026 28 1 5.2715 2.0279 0.8348 29 1 3.8107 2.0795 1.8505 30 1 6.4819 -0.4191 0.5321 31 1 7.1348 -2.9613 2.7277 32 1 5.7667 -3.9454 2.1547 33 1 6.8494 -3.1579 0.9818 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 54.679315 kcal Electronic energy + Delta-G solvation = -15901.678730 eV Core-core repulsion = 13351.677642 eV Total energy + Delta-G solvation = -2550.001088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.71206 -38.41123 -35.62344 -34.73272 -33.89099 -32.26336 -29.49716 -28.05717 -27.56023 -24.03076 -23.72251 -21.90086 -21.16933 -19.10375 -18.42485 -17.81076 -17.35900 -16.23074 -15.72379 -15.51877 -14.76292 -14.69917 -14.40212 -14.16203 -13.95322 -13.81521 -13.57167 -13.41564 -12.68990 -12.49434 -12.44143 -12.36237 -12.05374 -11.88613 -11.63494 -11.40300 -10.85647 -10.65637 -10.23295 -8.91326 -8.21838 -5.65580 0.58439 1.30926 1.36486 1.46531 1.55485 2.25797 2.40181 3.03007 3.33949 3.37322 3.65786 4.14986 4.21366 4.31131 4.37024 4.48329 4.59227 4.60419 4.67288 4.74461 4.77128 4.93663 4.97147 4.97936 5.13769 5.24054 5.31063 5.36369 5.55783 5.89823 6.17100 6.88744 7.36896 7.53621 7.94988 8.96903 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.012911 C = 0.009155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.656834 B = 2168.245945 C = 3057.823177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.143 3.857 4 N -0.599 5.599 5 C -0.264 4.264 6 H 0.036 0.964 7 C -0.009 4.009 8 N -0.939 5.939 9 Si 0.931 3.069 10 H -0.267 1.267 11 H -0.305 1.305 12 H -0.245 1.245 13 C 0.200 3.800 14 C -0.025 4.025 15 C -0.247 4.247 16 C 0.013 3.987 17 C -0.070 4.070 18 N -0.400 5.400 19 O 0.079 5.921 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.026 0.974 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.266 0.734 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -2.255 9.678 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C 0.018 3.982 4 N -0.320 5.320 5 C -0.393 4.393 6 H 0.054 0.946 7 C -0.206 4.206 8 N -0.582 5.582 9 Si 0.758 3.242 10 H -0.194 1.194 11 H -0.234 1.234 12 H -0.169 1.169 13 C 0.072 3.928 14 C -0.092 4.092 15 C -0.270 4.270 16 C -0.146 4.146 17 C -0.127 4.127 18 N -0.110 5.110 19 O 0.019 5.981 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.175 0.825 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.948 -2.927 10.427 11.528 hybrid contribution 1.208 0.674 -0.883 1.642 sum -2.740 -2.252 9.544 10.182 Atomic orbital electron populations 1.21637 0.93776 1.01782 1.02346 1.21925 0.96905 0.99080 0.99635 1.21229 0.81277 0.94765 1.00890 1.44306 1.02007 1.84916 1.00771 1.18495 1.09218 1.21995 0.89636 0.94628 1.26050 0.96817 1.00040 0.97732 1.70003 1.13317 1.40266 1.34598 0.86031 0.79168 0.80691 0.78277 1.19356 1.23383 1.16868 1.20189 0.97198 0.85971 0.89395 1.26293 0.91375 0.99898 0.91600 1.22529 1.03397 0.94889 1.06214 1.24135 0.95186 0.99287 0.95975 1.20268 0.97135 0.90697 1.04593 1.73680 1.12635 1.00723 1.23995 1.84703 1.44933 1.19829 1.48608 0.92494 0.92773 0.91200 0.95499 0.93942 0.90760 0.92652 0.92524 0.90722 0.88107 0.82482 0.88404 0.89970 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.14 -4.86 6.23 30.60 0.19 -4.67 16 3 C 0.14 5.29 5.72 86.38 0.49 5.78 16 4 N -0.60 -26.71 2.07 -706.32 -1.46 -28.17 16 5 C -0.26 -14.28 9.92 84.04 0.83 -13.44 16 6 H 0.04 2.21 8.06 -2.91 -0.02 2.18 16 7 C -0.01 -0.48 5.31 84.86 0.45 -0.02 16 8 N -0.94 -55.84 13.97 21.65 0.30 -55.54 16 9 Si 0.93 41.94 25.01 68.60 1.72 43.65 16 10 H -0.27 -11.26 6.67 99.48 0.66 -10.60 16 11 H -0.31 -14.15 7.11 99.48 0.71 -13.45 16 12 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 13 C 0.20 8.00 5.10 85.63 0.44 8.44 16 14 C -0.03 -1.01 7.05 25.04 0.18 -0.84 16 15 C -0.25 -9.96 11.06 22.40 0.25 -9.71 16 16 C 0.01 0.47 7.33 43.58 0.32 0.79 16 17 C -0.07 -1.78 10.47 71.24 0.75 -1.03 16 18 N -0.40 -15.37 12.07 -49.56 -0.60 -15.97 16 19 O 0.08 3.09 10.51 71.65 0.75 3.85 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.04 1.59 7.42 -2.39 -0.02 1.57 16 25 H 0.07 2.30 7.83 -2.39 -0.02 2.29 16 26 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.08 3.17 3.24 -2.39 -0.01 3.16 16 29 H 0.10 3.31 7.86 -2.39 -0.02 3.29 16 30 H 0.16 6.52 8.06 -2.91 -0.02 6.49 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.15 278.48 6.36 -56.79 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.04 Total: 13.10 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.61 Total: -17.72 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -1.76 Total: -99.68 kcal Atomic # 8 Polarization: 3.09 SS G_CDS: 0.75 Total: 3.85 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.72 Total: 43.65 kcal Total: -63.15 6.36 -56.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.470 kcal (2) G-P(sol) polarization free energy of solvation -63.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds