Wall clock time and date at job start Mon Mar 30 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46765 * 124.35092 * 2 1 4 4 C 1.54480 * 105.47560 * 163.00251 * 3 2 1 5 5 C 1.54622 * 101.76241 * 25.41976 * 4 3 2 6 6 H 1.08998 * 110.48928 * 93.87983 * 5 4 3 7 7 N 1.46507 * 110.48306 * 216.52518 * 5 4 3 8 8 C 1.36929 * 120.00044 * 59.99696 * 7 5 4 9 9 H 1.08000 * 120.00386 * 308.16903 * 8 7 5 10 10 C 1.38822 * 119.99962 * 128.17719 * 8 7 5 11 11 N 1.31617 * 119.99522 * 348.01309 * 10 8 7 12 12 Si 1.86797 * 120.00186 * 168.01110 * 10 8 7 13 13 H 1.48502 * 109.47008 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47066 * 119.99899 * 12 10 8 15 15 H 1.48502 * 109.47119 * 240.00150 * 12 10 8 16 16 C 1.46500 * 119.99502 * 239.99733 * 7 5 4 17 17 C 1.53002 * 117.49832 * 181.94929 * 16 7 5 18 18 C 1.52995 * 60.00064 * 252.51369 * 17 16 7 19 19 C 1.34416 * 124.35358 * 180.02562 * 2 1 3 20 20 O 1.21284 * 124.93688 * 0.42049 * 19 2 1 21 21 H 1.09001 * 109.47471 * 89.99930 * 1 2 3 22 22 H 1.08998 * 109.47096 * 210.00437 * 1 2 3 23 23 H 1.09006 * 109.47410 * 329.99879 * 1 2 3 24 24 H 1.09003 * 110.24489 * 44.00251 * 3 2 1 25 25 H 1.08999 * 110.24514 * 282.00777 * 3 2 1 26 26 H 1.09003 * 110.96513 * 143.53498 * 4 3 2 27 27 H 1.08999 * 110.97109 * 267.29556 * 4 3 2 28 28 H 0.97006 * 119.99423 * 175.29436 * 11 10 8 29 29 H 1.08997 * 115.55560 * 327.65914 * 16 7 5 30 30 H 1.09002 * 117.49770 * 0.02562 * 17 16 7 31 31 H 1.09007 * 117.50039 * 145.01879 * 17 16 7 32 32 H 1.09006 * 117.49628 * 252.51285 * 18 17 16 33 33 H 1.08995 * 117.52158 * 107.48506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7486 0.4352 5 6 3.6898 -0.7377 0.0093 6 1 4.1191 -0.8527 -0.9860 7 7 4.4196 -1.5553 0.9816 8 6 4.0079 -1.5975 2.2868 9 1 3.8468 -0.6794 2.8323 10 6 3.7975 -2.8205 2.9090 11 7 3.7617 -3.9250 2.1940 12 14 3.5654 -2.8987 4.7608 13 1 3.6490 -1.5290 5.3284 14 1 2.2351 -3.4823 5.0687 15 1 4.6282 -3.7470 5.3576 16 6 5.5901 -2.3275 0.5573 17 6 6.2819 -3.1970 1.6090 18 6 6.9516 -1.9121 1.1180 19 6 2.2234 -1.1097 -0.0005 20 8 1.7946 -2.2441 -0.0083 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.8986 1.9382 0.7105 25 1 2.3303 1.6431 -1.0003 26 1 4.4753 1.3011 -0.0973 27 1 3.8273 0.8445 1.5136 28 1 3.6832 -4.7856 2.6347 29 1 5.5603 -2.7025 -0.4657 30 1 5.8659 -3.1948 2.6166 31 1 6.7073 -4.1445 1.2781 32 1 7.8177 -2.0141 0.4640 33 1 6.9767 -1.0640 1.8022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:31 Heat of formation + Delta-G solvation = 32.174515 kcal Electronic energy + Delta-G solvation = -16345.981889 eV Core-core repulsion = 13795.004920 eV Total energy + Delta-G solvation = -2550.976969 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46131 -36.65122 -35.31849 -32.98673 -31.85472 -29.62335 -26.35610 -25.64877 -23.91270 -20.94332 -20.88974 -19.93888 -18.60583 -16.50066 -15.95346 -15.58861 -14.98031 -14.46003 -14.15163 -13.49352 -13.19294 -12.96486 -12.54430 -12.08908 -11.87116 -11.72296 -11.59168 -11.18524 -10.90800 -10.84272 -10.60924 -10.41178 -10.12347 -9.92223 -9.26636 -8.92880 -8.62840 -8.10516 -7.97630 -6.29898 -5.66758 -3.55129 3.33630 3.43024 3.44040 3.61842 3.83858 4.44456 5.14814 5.23754 5.28733 5.33797 5.52404 5.61828 5.74191 5.87396 5.89171 6.02584 6.13074 6.20097 6.26692 6.46669 6.58510 6.61365 6.75481 6.82437 7.05587 7.28710 7.31629 7.70693 7.85908 7.93752 8.60536 9.22738 9.30402 9.72459 10.41052 11.24004 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.012759 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.818506 B = 2194.024188 C = 2710.144882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.641 5.641 3 C 0.113 3.887 4 C -0.146 4.146 5 C 0.148 3.852 6 H 0.082 0.918 7 N -0.526 5.526 8 C -0.292 4.292 9 H 0.056 0.944 10 C 0.045 3.955 11 N -0.844 5.844 12 Si 0.884 3.116 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.285 1.285 16 C 0.151 3.849 17 C -0.148 4.148 18 C -0.243 4.243 19 C 0.510 3.490 20 O -0.502 6.502 21 H 0.042 0.958 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.253 0.747 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 9.076 -4.060 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.380 5.380 3 C -0.011 4.011 4 C -0.185 4.185 5 C 0.037 3.963 6 H 0.099 0.901 7 N -0.242 5.242 8 C -0.422 4.422 9 H 0.073 0.927 10 C -0.161 4.161 11 N -0.480 5.480 12 Si 0.712 3.288 13 H -0.199 1.199 14 H -0.214 1.214 15 H -0.211 1.211 16 C 0.043 3.957 17 C -0.187 4.187 18 C -0.284 4.284 19 C 0.296 3.704 20 O -0.373 6.373 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.878 8.202 -4.044 9.187 hybrid contribution -0.284 -0.119 1.089 1.132 sum -1.162 8.084 -2.955 8.685 Atomic orbital electron populations 1.21329 0.80082 1.02198 1.00402 1.48276 1.05330 1.08052 1.76373 1.21901 0.91839 0.87404 0.99972 1.23047 0.94309 0.97717 1.03468 1.21138 0.89277 0.91286 0.94616 0.90051 1.42900 1.25161 1.51692 1.04482 1.18667 1.45283 0.91252 0.86978 0.92688 1.25526 0.96118 0.96824 0.97603 1.70189 1.46944 0.97167 1.33665 0.86572 0.77695 0.78031 0.86503 1.19857 1.21362 1.21081 1.20618 0.83444 0.97244 0.94391 1.22941 1.02172 0.91309 1.02236 1.23521 0.98118 1.00493 1.06247 1.21992 0.90322 0.83950 0.74114 1.90669 1.78290 1.21035 1.47301 0.93894 0.91324 0.92254 0.91905 0.92555 0.90780 0.89345 0.93658 0.90526 0.87382 0.91855 0.91723 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.96 59.84 0.66 2.24 16 2 N -0.64 -11.90 3.33 -180.29 -0.60 -12.50 16 3 C 0.11 1.66 7.35 -3.12 -0.02 1.64 16 4 C -0.15 -2.46 6.76 -25.10 -0.17 -2.63 16 5 C 0.15 3.17 3.48 -67.94 -0.24 2.93 16 6 H 0.08 1.60 7.98 -51.93 -0.41 1.19 16 7 N -0.53 -13.00 2.66 -158.16 -0.42 -13.42 16 8 C -0.29 -7.86 7.67 -15.06 -0.12 -7.97 16 9 H 0.06 1.49 6.82 -52.49 -0.36 1.14 16 10 C 0.05 1.25 3.21 -17.43 -0.06 1.19 16 11 N -0.84 -24.69 11.30 55.49 0.63 -24.06 16 12 Si 0.88 21.60 29.53 -169.99 -5.02 16.58 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C 0.15 3.57 5.98 -67.93 -0.41 3.16 16 17 C -0.15 -3.50 8.24 -26.73 -0.22 -3.72 16 18 C -0.24 -5.07 10.37 -26.73 -0.28 -5.34 16 19 C 0.51 11.89 6.97 -10.86 -0.08 11.81 16 20 O -0.50 -14.16 17.59 5.55 0.10 -14.07 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 1.66 6.59 -51.93 -0.34 1.32 16 28 H 0.25 7.19 8.32 -40.82 -0.34 6.85 16 29 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.11 2.84 5.11 -51.93 -0.27 2.57 16 31 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -32.56 272.76 -6.86 -39.42 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.73 Total: 0.62 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.92 Total: 3.32 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.39 Total: -49.98 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.10 Total: -14.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.56 -6.86 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.597 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds