Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46765 * 124.35092 * 2 1 4 4 C 1.54480 * 105.47560 * 163.00251 * 3 2 1 5 5 C 1.54622 * 101.76241 * 25.41976 * 4 3 2 6 6 H 1.08998 * 110.48928 * 93.87983 * 5 4 3 7 7 N 1.46507 * 110.48306 * 216.52518 * 5 4 3 8 8 C 1.36929 * 120.00044 * 59.99696 * 7 5 4 9 9 H 1.08000 * 120.00386 * 308.16903 * 8 7 5 10 10 C 1.38822 * 119.99962 * 128.17719 * 8 7 5 11 11 N 1.31617 * 119.99522 * 348.01309 * 10 8 7 12 12 Si 1.86797 * 120.00186 * 168.01110 * 10 8 7 13 13 H 1.48502 * 109.47008 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47066 * 119.99899 * 12 10 8 15 15 H 1.48502 * 109.47119 * 240.00150 * 12 10 8 16 16 C 1.46500 * 119.99502 * 239.99733 * 7 5 4 17 17 C 1.53002 * 117.49832 * 181.94929 * 16 7 5 18 18 C 1.52995 * 60.00064 * 252.51369 * 17 16 7 19 19 C 1.34416 * 124.35358 * 180.02562 * 2 1 3 20 20 O 1.21284 * 124.93688 * 0.42049 * 19 2 1 21 21 H 1.09001 * 109.47471 * 89.99930 * 1 2 3 22 22 H 1.08998 * 109.47096 * 210.00437 * 1 2 3 23 23 H 1.09006 * 109.47410 * 329.99879 * 1 2 3 24 24 H 1.09003 * 110.24489 * 44.00251 * 3 2 1 25 25 H 1.08999 * 110.24514 * 282.00777 * 3 2 1 26 26 H 1.09003 * 110.96513 * 143.53498 * 4 3 2 27 27 H 1.08999 * 110.97109 * 267.29556 * 4 3 2 28 28 H 0.97006 * 119.99423 * 175.29436 * 11 10 8 29 29 H 1.08997 * 115.55560 * 327.65914 * 16 7 5 30 30 H 1.09002 * 117.49770 * 0.02562 * 17 16 7 31 31 H 1.09007 * 117.50039 * 145.01879 * 17 16 7 32 32 H 1.09006 * 117.49628 * 252.51285 * 18 17 16 33 33 H 1.08995 * 117.52158 * 107.48506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7486 0.4352 5 6 3.6898 -0.7377 0.0093 6 1 4.1191 -0.8527 -0.9860 7 7 4.4196 -1.5553 0.9816 8 6 4.0079 -1.5975 2.2868 9 1 3.8468 -0.6794 2.8323 10 6 3.7975 -2.8205 2.9090 11 7 3.7617 -3.9250 2.1940 12 14 3.5654 -2.8987 4.7608 13 1 3.6490 -1.5290 5.3284 14 1 2.2351 -3.4823 5.0687 15 1 4.6282 -3.7470 5.3576 16 6 5.5901 -2.3275 0.5573 17 6 6.2819 -3.1970 1.6090 18 6 6.9516 -1.9121 1.1180 19 6 2.2234 -1.1097 -0.0005 20 8 1.7946 -2.2441 -0.0083 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.8986 1.9382 0.7105 25 1 2.3303 1.6431 -1.0003 26 1 4.4753 1.3011 -0.0973 27 1 3.8273 0.8445 1.5136 28 1 3.6832 -4.7856 2.6347 29 1 5.5603 -2.7025 -0.4657 30 1 5.8659 -3.1948 2.6166 31 1 6.7073 -4.1445 1.2781 32 1 7.8177 -2.0141 0.4640 33 1 6.9767 -1.0640 1.8022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = 10.264956 kcal Electronic energy + Delta-G solvation = -16346.931959 eV Core-core repulsion = 13795.004920 eV Total energy + Delta-G solvation = -2551.927039 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.07069 -38.47262 -37.03967 -34.68354 -33.76333 -31.24067 -27.91870 -27.23239 -25.69380 -22.70709 -22.35065 -21.83177 -20.23696 -18.37281 -17.58792 -17.16637 -16.72651 -16.37049 -15.75825 -15.25168 -14.84816 -14.47213 -14.18464 -13.75086 -13.36728 -13.33275 -13.15637 -12.87459 -12.76172 -12.56769 -12.35904 -12.05500 -11.95367 -11.70367 -11.08055 -10.73907 -10.43775 -10.12434 -9.44158 -8.28436 -7.66510 -5.62348 1.37655 1.41338 1.49407 1.92581 2.39847 2.45554 3.28001 3.50085 3.61259 3.91134 4.01273 4.36275 4.40116 4.46991 4.52989 4.58595 4.72715 4.78973 4.81591 4.85282 4.87364 5.08921 5.21465 5.25611 5.44362 5.55647 5.71648 5.83880 5.91848 6.37151 6.54629 7.26040 7.60596 7.78552 8.42546 9.16303 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.012759 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.818506 B = 2194.024188 C = 2710.144882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.639 5.639 3 C 0.113 3.887 4 C -0.131 4.131 5 C 0.135 3.865 6 H 0.094 0.906 7 N -0.542 5.542 8 C -0.284 4.284 9 H 0.051 0.949 10 C 0.000 4.000 11 N -0.880 5.880 12 Si 0.935 3.065 13 H -0.261 1.261 14 H -0.299 1.299 15 H -0.282 1.282 16 C 0.130 3.870 17 C -0.165 4.165 18 C -0.201 4.201 19 C 0.494 3.506 20 O -0.570 6.570 21 H 0.064 0.936 22 H 0.038 0.962 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.245 0.755 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 12.018 -4.569 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.376 5.376 3 C -0.009 4.009 4 C -0.171 4.171 5 C 0.025 3.975 6 H 0.112 0.888 7 N -0.260 5.260 8 C -0.414 4.414 9 H 0.069 0.931 10 C -0.202 4.202 11 N -0.518 5.518 12 Si 0.763 3.237 13 H -0.185 1.185 14 H -0.227 1.227 15 H -0.208 1.208 16 C 0.022 3.978 17 C -0.204 4.204 18 C -0.242 4.242 19 C 0.281 3.719 20 O -0.447 6.447 21 H 0.082 0.918 22 H 0.056 0.944 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.373 11.241 -4.554 12.134 hybrid contribution -0.465 -0.941 1.169 1.571 sum -0.838 10.300 -3.385 10.874 Atomic orbital electron populations 1.21530 0.78350 1.02589 1.01946 1.48413 1.06757 1.08131 1.74249 1.22215 0.89658 0.86084 1.02967 1.22947 0.97100 0.94491 1.02542 1.21454 0.87979 0.93315 0.94800 0.88798 1.43061 1.26153 1.52286 1.04470 1.18774 1.43651 0.90798 0.88216 0.93117 1.26102 0.96563 0.96769 1.00800 1.70329 1.49433 0.97272 1.34776 0.85754 0.76765 0.78357 0.82837 1.18529 1.22686 1.20781 1.20762 0.84726 0.98054 0.94280 1.22809 1.03784 0.92903 1.00894 1.23439 0.97460 0.98266 1.04985 1.22417 0.91859 0.84029 0.73600 1.90626 1.79513 1.23808 1.50764 0.91783 0.94351 0.88381 0.89122 0.88688 0.87184 0.91470 0.94549 0.90601 0.90214 0.91464 0.88304 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.81 10.96 127.77 1.40 4.21 16 2 N -0.64 -22.30 3.33 -842.90 -2.81 -25.11 16 3 C 0.11 2.81 7.35 86.83 0.64 3.45 16 4 C -0.13 -3.99 6.76 31.65 0.21 -3.78 16 5 C 0.14 5.61 3.48 44.98 0.16 5.76 16 6 H 0.09 3.57 7.98 -2.39 -0.02 3.55 16 7 N -0.54 -26.72 2.66 -654.29 -1.74 -28.46 16 8 C -0.28 -15.37 7.67 84.04 0.64 -14.73 16 9 H 0.05 2.75 6.82 -2.91 -0.02 2.73 16 10 C 0.00 -0.02 3.21 84.86 0.27 0.26 16 11 N -0.88 -53.40 11.30 21.65 0.24 -53.16 16 12 Si 0.94 45.34 29.53 68.60 2.03 47.36 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 14 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 16 C 0.13 6.08 5.98 44.99 0.27 6.35 16 17 C -0.17 -7.84 8.24 30.59 0.25 -7.59 16 18 C -0.20 -7.97 10.37 30.59 0.32 -7.65 16 19 C 0.49 22.97 6.97 87.90 0.61 23.59 16 20 O -0.57 -33.35 17.59 -3.04 -0.05 -33.40 16 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.04 1.33 7.93 -2.39 -0.02 1.31 16 23 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.11 2.56 8.14 -2.39 -0.02 2.55 16 27 H 0.07 2.35 6.59 -2.39 -0.02 2.34 16 28 H 0.25 14.58 8.32 -92.70 -0.77 13.81 16 29 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 30 H 0.08 4.27 5.11 -2.39 -0.01 4.25 16 31 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 32 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 33 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -74.03 272.76 3.53 -70.49 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.09 Total: 12.41 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 4.78 Total: 9.87 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -4.31 Total: -106.73 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.05 Total: -33.40 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -74.03 3.53 -70.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.759 kcal (2) G-P(sol) polarization free energy of solvation -74.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds