Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46761 * 124.34680 * 2 1 4 4 C 1.54478 * 105.47430 * 162.98656 * 3 2 1 5 5 C 1.54632 * 101.76406 * 25.41718 * 4 3 2 6 6 H 1.08995 * 110.48789 * 216.39019 * 5 4 3 7 7 N 1.46503 * 110.48540 * 93.87864 * 5 4 3 8 8 C 1.36932 * 120.00180 * 301.84496 * 7 5 4 9 9 H 1.08003 * 119.99850 * 307.94717 * 8 7 5 10 10 C 1.38809 * 120.00499 * 127.95402 * 8 7 5 11 11 N 1.31620 * 119.99691 * 347.52200 * 10 8 7 12 12 Si 1.86796 * 120.00452 * 167.52362 * 10 8 7 13 13 H 1.48504 * 109.47009 * 90.00078 * 12 10 8 14 14 H 1.48495 * 109.47174 * 209.99599 * 12 10 8 15 15 H 1.48496 * 109.47322 * 329.99952 * 12 10 8 16 16 C 1.46503 * 119.99897 * 121.56746 * 7 5 4 17 17 C 1.52998 * 117.49796 * 181.77448 * 16 7 5 18 18 C 1.52996 * 117.50036 * 113.11243 * 16 7 5 19 19 C 1.34743 * 124.30079 * 179.97438 * 2 1 3 20 20 O 1.21276 * 125.12541 * 0.41411 * 19 2 1 21 21 H 1.09000 * 109.47577 * 89.99708 * 1 2 3 22 22 H 1.09006 * 109.46769 * 209.99713 * 1 2 3 23 23 H 1.09001 * 109.47083 * 329.99513 * 1 2 3 24 24 H 1.09005 * 110.24693 * 43.98519 * 3 2 1 25 25 H 1.09004 * 110.32343 * 282.02234 * 3 2 1 26 26 H 1.09000 * 110.97105 * 267.29713 * 4 3 2 27 27 H 1.09004 * 111.00327 * 143.54677 * 4 3 2 28 28 H 0.96999 * 120.00563 * 175.35758 * 11 10 8 29 29 H 1.09000 * 115.54756 * 327.43990 * 16 7 5 30 30 H 1.08992 * 117.50104 * 359.97438 * 17 16 7 31 31 H 1.09000 * 117.49505 * 145.02271 * 17 16 7 32 32 H 1.09006 * 117.49940 * 214.98313 * 18 16 7 33 33 H 1.09005 * 117.49757 * 359.97425 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7010 0.7488 0.4356 5 6 3.6898 -0.7377 0.0099 6 1 4.2347 -1.3455 0.7323 7 7 4.2672 -0.8924 -1.3276 8 6 3.7214 -0.2235 -2.3905 9 1 2.6624 -0.2979 -2.5892 10 6 4.5291 0.5500 -3.2127 11 7 5.7575 0.8427 -2.8416 12 14 3.8728 1.1757 -4.8458 13 1 3.2320 2.5005 -4.6469 14 1 4.9931 1.3078 -5.8116 15 1 2.8717 0.2163 -5.3773 16 6 5.4323 -1.7580 -1.5269 17 6 6.0141 -1.8453 -2.9392 18 6 5.2353 -3.0277 -2.3573 19 6 2.2243 -1.1131 0.0005 20 8 1.7982 -2.2485 -0.0062 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.8983 1.9383 0.7102 25 1 2.3308 1.6444 -0.9998 26 1 3.8269 0.8448 1.5140 27 1 4.4758 1.3010 -0.0963 28 1 6.3444 1.3255 -3.4444 29 1 6.1303 -1.8064 -0.6911 30 1 5.5298 -1.2593 -3.7202 31 1 7.0948 -1.9518 -3.0326 32 1 5.8039 -3.9116 -2.0681 33 1 4.2386 -3.2194 -2.7551 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = 26.176875 kcal Electronic energy + Delta-G solvation = -16431.589881 eV Core-core repulsion = 13880.352835 eV Total energy + Delta-G solvation = -2551.237046 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59180 -36.71075 -35.49002 -32.97566 -31.91562 -29.57136 -26.36445 -25.90141 -23.84672 -21.11502 -20.77414 -19.87943 -18.78109 -16.49607 -16.12921 -15.76302 -14.70788 -14.59952 -14.26483 -13.51568 -13.11591 -13.01638 -12.68146 -12.16985 -11.95442 -11.74358 -11.45258 -11.29785 -11.07222 -10.91504 -10.49738 -10.20676 -10.17670 -9.94705 -9.50145 -8.93030 -8.89959 -8.23961 -8.00333 -6.44447 -5.81754 -3.67820 3.25193 3.34385 3.34772 3.43425 3.75668 4.36348 5.14143 5.23239 5.26090 5.37841 5.47663 5.66250 5.82015 5.84351 6.03696 6.06385 6.19035 6.23935 6.40499 6.48627 6.56674 6.68661 6.80264 6.97271 7.08080 7.26375 7.32137 7.64430 7.74860 7.82640 8.51635 8.99933 9.12559 9.59601 10.29460 11.08228 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.013460 C = 0.010754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.281754 B = 2079.768170 C = 2603.071965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.625 5.625 3 C 0.118 3.882 4 C -0.141 4.141 5 C 0.151 3.849 6 H 0.082 0.918 7 N -0.531 5.531 8 C -0.275 4.275 9 H 0.052 0.948 10 C 0.041 3.959 11 N -0.865 5.865 12 Si 0.885 3.115 13 H -0.282 1.282 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.150 3.850 17 C -0.146 4.146 18 C -0.242 4.242 19 C 0.515 3.485 20 O -0.550 6.550 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.256 0.744 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 1.962 4.873 6.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.360 5.360 3 C -0.004 4.004 4 C -0.181 4.181 5 C 0.040 3.960 6 H 0.100 0.900 7 N -0.249 5.249 8 C -0.405 4.405 9 H 0.069 0.931 10 C -0.162 4.162 11 N -0.503 5.503 12 Si 0.712 3.288 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.042 3.958 17 C -0.184 4.184 18 C -0.283 4.283 19 C 0.302 3.698 20 O -0.426 6.426 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.123 0.877 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.488 1.546 4.830 6.155 hybrid contribution -0.370 0.472 -1.121 1.271 sum -3.858 2.018 3.709 5.719 Atomic orbital electron populations 1.21373 0.79987 1.01793 1.01129 1.48220 1.05407 1.08377 1.74040 1.21958 0.90697 0.86166 1.01610 1.22986 0.96934 0.98784 0.99354 1.21019 0.89993 0.94769 0.90222 0.89995 1.42931 1.31840 1.48807 1.01301 1.18700 0.93197 1.22838 1.05728 0.93072 1.25416 0.96525 0.95002 0.99280 1.70095 1.06626 1.38960 1.34602 0.86635 0.78640 0.79217 0.84267 1.20819 1.21152 1.20098 1.20693 0.90946 0.90925 0.93257 1.22952 0.96582 0.99366 0.99535 1.23511 1.01218 0.92940 1.10602 1.22148 0.90910 0.83679 0.73050 1.90576 1.79491 1.21562 1.50996 0.93402 0.91573 0.91961 0.92637 0.90484 0.92215 0.87708 0.93352 0.90222 0.87580 0.91669 0.91588 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.53 10.97 59.85 0.66 2.18 16 2 N -0.62 -11.80 3.34 -180.19 -0.60 -12.40 16 3 C 0.12 2.05 6.70 -3.12 -0.02 2.03 16 4 C -0.14 -2.58 6.48 -25.10 -0.16 -2.74 16 5 C 0.15 3.23 3.57 -67.94 -0.24 2.99 16 6 H 0.08 1.66 7.97 -51.93 -0.41 1.24 16 7 N -0.53 -12.84 2.63 -158.16 -0.42 -13.25 16 8 C -0.27 -7.07 6.69 -15.06 -0.10 -7.17 16 9 H 0.05 1.42 7.64 -52.48 -0.40 1.02 16 10 C 0.04 1.06 3.19 -17.43 -0.06 1.00 16 11 N -0.87 -22.54 11.37 55.49 0.63 -21.91 16 12 Si 0.88 20.39 29.51 -169.99 -5.02 15.38 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.15 3.49 5.97 -67.93 -0.41 3.09 16 17 C -0.15 -3.39 8.26 -26.69 -0.22 -3.61 16 18 C -0.24 -5.36 10.38 -26.69 -0.28 -5.64 16 19 C 0.52 11.45 6.91 -10.71 -0.07 11.38 16 20 O -0.55 -13.92 17.61 5.56 0.10 -13.82 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 1.02 7.94 -51.93 -0.41 0.60 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.48 7.59 -51.93 -0.39 1.09 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.10 2.18 8.07 -51.93 -0.42 1.76 16 28 H 0.26 6.54 8.32 -40.82 -0.34 6.20 16 29 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 30 H 0.11 2.72 5.14 -51.93 -0.27 2.45 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 272.72 15.07 4.11 4.11 Total: -1.00 -29.28 272.72 -6.92 -36.20 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.82 Total: 2.19 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.90 Total: 3.51 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.39 Total: -47.56 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.10 Total: -13.82 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.28 -6.92 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.382 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds