Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46761 * 124.34680 * 2 1 4 4 C 1.54478 * 105.47430 * 162.98656 * 3 2 1 5 5 C 1.54632 * 101.76406 * 25.41718 * 4 3 2 6 6 H 1.08995 * 110.48789 * 216.39019 * 5 4 3 7 7 N 1.46503 * 110.48540 * 93.87864 * 5 4 3 8 8 C 1.36932 * 120.00180 * 301.84496 * 7 5 4 9 9 H 1.08003 * 119.99850 * 307.94717 * 8 7 5 10 10 C 1.38809 * 120.00499 * 127.95402 * 8 7 5 11 11 N 1.31620 * 119.99691 * 347.52200 * 10 8 7 12 12 Si 1.86796 * 120.00452 * 167.52362 * 10 8 7 13 13 H 1.48504 * 109.47009 * 90.00078 * 12 10 8 14 14 H 1.48495 * 109.47174 * 209.99599 * 12 10 8 15 15 H 1.48496 * 109.47322 * 329.99952 * 12 10 8 16 16 C 1.46503 * 119.99897 * 121.56746 * 7 5 4 17 17 C 1.52998 * 117.49796 * 181.77448 * 16 7 5 18 18 C 1.52996 * 117.50036 * 113.11243 * 16 7 5 19 19 C 1.34743 * 124.30079 * 179.97438 * 2 1 3 20 20 O 1.21276 * 125.12541 * 0.41411 * 19 2 1 21 21 H 1.09000 * 109.47577 * 89.99708 * 1 2 3 22 22 H 1.09006 * 109.46769 * 209.99713 * 1 2 3 23 23 H 1.09001 * 109.47083 * 329.99513 * 1 2 3 24 24 H 1.09005 * 110.24693 * 43.98519 * 3 2 1 25 25 H 1.09004 * 110.32343 * 282.02234 * 3 2 1 26 26 H 1.09000 * 110.97105 * 267.29713 * 4 3 2 27 27 H 1.09004 * 111.00327 * 143.54677 * 4 3 2 28 28 H 0.96999 * 120.00563 * 175.35758 * 11 10 8 29 29 H 1.09000 * 115.54756 * 327.43990 * 16 7 5 30 30 H 1.08992 * 117.50104 * 359.97438 * 17 16 7 31 31 H 1.09000 * 117.49505 * 145.02271 * 17 16 7 32 32 H 1.09006 * 117.49940 * 214.98313 * 18 16 7 33 33 H 1.09005 * 117.49757 * 359.97425 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7010 0.7488 0.4356 5 6 3.6898 -0.7377 0.0099 6 1 4.2347 -1.3455 0.7323 7 7 4.2672 -0.8924 -1.3276 8 6 3.7214 -0.2235 -2.3905 9 1 2.6624 -0.2979 -2.5892 10 6 4.5291 0.5500 -3.2127 11 7 5.7575 0.8427 -2.8416 12 14 3.8728 1.1757 -4.8458 13 1 3.2320 2.5005 -4.6469 14 1 4.9931 1.3078 -5.8116 15 1 2.8717 0.2163 -5.3773 16 6 5.4323 -1.7580 -1.5269 17 6 6.0141 -1.8453 -2.9392 18 6 5.2353 -3.0277 -2.3573 19 6 2.2243 -1.1131 0.0005 20 8 1.7982 -2.2485 -0.0062 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.8983 1.9383 0.7102 25 1 2.3308 1.6444 -0.9998 26 1 3.8269 0.8448 1.5140 27 1 4.4758 1.3010 -0.0963 28 1 6.3444 1.3255 -3.4444 29 1 6.1303 -1.8064 -0.6911 30 1 5.5298 -1.2593 -3.7202 31 1 7.0948 -1.9518 -3.0326 32 1 5.8039 -3.9116 -2.0681 33 1 4.2386 -3.2194 -2.7551 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = 8.117172 kcal Electronic energy + Delta-G solvation = -16432.373009 eV Core-core repulsion = 13880.352835 eV Total energy + Delta-G solvation = -2552.020174 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22386 -38.53361 -37.18087 -34.68230 -33.75763 -31.21823 -28.00639 -27.41071 -25.64034 -22.84921 -22.44516 -21.70091 -20.40814 -18.36828 -17.80859 -17.38523 -16.52577 -16.28251 -15.96956 -15.23160 -14.80882 -14.55667 -14.32124 -13.86171 -13.38369 -13.30939 -13.14873 -13.12580 -12.83051 -12.64724 -12.20870 -12.02175 -11.81339 -11.67607 -11.36077 -10.72126 -10.68596 -10.17604 -9.52381 -8.36134 -7.73811 -5.65533 1.39435 1.45496 1.51125 1.67942 2.31372 2.46287 3.20902 3.51082 3.56926 3.83058 3.93764 4.30748 4.42751 4.47417 4.51776 4.60097 4.68410 4.69647 4.82225 4.84239 4.86872 5.03005 5.16762 5.29080 5.46147 5.54702 5.67849 5.76873 5.82552 6.24810 6.53545 7.17946 7.37075 7.70417 8.37087 9.10768 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.013460 C = 0.010754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.281754 B = 2079.768170 C = 2603.071965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.620 5.620 3 C 0.120 3.880 4 C -0.128 4.128 5 C 0.140 3.860 6 H 0.090 0.910 7 N -0.544 5.544 8 C -0.275 4.275 9 H 0.025 0.975 10 C 0.019 3.981 11 N -0.879 5.879 12 Si 0.929 3.071 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.288 1.288 16 C 0.134 3.866 17 C -0.147 4.147 18 C -0.229 4.229 19 C 0.504 3.496 20 O -0.592 6.592 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.255 0.745 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 2.959 5.831 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.354 5.354 3 C -0.002 4.002 4 C -0.167 4.167 5 C 0.029 3.971 6 H 0.108 0.892 7 N -0.263 5.263 8 C -0.405 4.405 9 H 0.043 0.957 10 C -0.183 4.183 11 N -0.517 5.517 12 Si 0.757 3.243 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.214 1.214 16 C 0.027 3.973 17 C -0.186 4.186 18 C -0.270 4.270 19 C 0.292 3.708 20 O -0.473 6.473 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.123 0.877 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.686 2.588 5.797 7.341 hybrid contribution -0.355 0.145 -1.411 1.462 sum -4.042 2.733 4.386 6.561 Atomic orbital electron populations 1.21625 0.77774 1.03783 1.01563 1.48363 1.06971 1.07866 1.72184 1.22032 0.90290 0.86179 1.01712 1.22844 0.96808 0.95832 1.01210 1.21236 0.89614 0.97078 0.89149 0.89224 1.43053 1.32088 1.49064 1.02122 1.18438 0.92110 1.23105 1.06889 0.95712 1.25720 0.96653 0.95067 1.00900 1.70150 1.07070 1.39404 1.35080 0.85955 0.77837 0.78698 0.81849 1.19993 1.21003 1.21360 1.20958 0.91272 0.91333 0.93772 1.22830 0.97294 0.99625 0.98806 1.23437 1.00120 0.93724 1.09714 1.22309 0.91730 0.83822 0.72983 1.90539 1.80213 1.23239 1.53273 0.93745 0.91902 0.87657 0.87940 0.92701 0.88507 0.90205 0.93502 0.88711 0.90186 0.90063 0.88604 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.67 10.97 127.77 1.40 4.07 16 2 N -0.62 -22.38 3.34 -842.41 -2.81 -25.19 16 3 C 0.12 3.86 6.70 86.83 0.58 4.44 16 4 C -0.13 -4.41 6.48 31.65 0.21 -4.21 16 5 C 0.14 5.87 3.57 44.99 0.16 6.03 16 6 H 0.09 3.54 7.97 -2.39 -0.02 3.52 16 7 N -0.54 -26.35 2.63 -654.29 -1.72 -28.06 16 8 C -0.28 -14.29 6.69 84.03 0.56 -13.73 16 9 H 0.03 1.42 7.64 -2.91 -0.02 1.40 16 10 C 0.02 0.97 3.19 84.86 0.27 1.24 16 11 N -0.88 -45.55 11.37 21.65 0.25 -45.30 16 12 Si 0.93 41.99 29.51 68.60 2.02 44.01 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 16 C 0.13 6.19 5.97 44.99 0.27 6.46 16 17 C -0.15 -6.76 8.26 30.62 0.25 -6.51 16 18 C -0.23 -10.04 10.38 30.62 0.32 -9.72 16 19 C 0.50 22.21 6.91 87.85 0.61 22.82 16 20 O -0.59 -30.31 17.61 -3.02 -0.05 -30.36 16 21 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.84 7.94 -2.38 -0.02 1.82 16 23 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 25 H 0.05 2.04 7.59 -2.38 -0.02 2.02 16 26 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.08 3.23 8.07 -2.39 -0.02 3.21 16 28 H 0.26 12.92 8.32 -92.71 -0.77 12.15 16 29 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 30 H 0.08 4.12 5.14 -2.39 -0.01 4.11 16 31 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 33 H 0.05 2.70 8.14 -2.38 -0.02 2.68 16 Total: -1.00 -63.25 272.72 3.40 -59.85 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.08 Total: 14.17 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.63 Total: 10.89 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -4.29 Total: -98.56 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.02 Total: 44.01 kcal Total: -63.25 3.40 -59.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.969 kcal (2) G-P(sol) polarization free energy of solvation -63.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds