Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 N 1.46494 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.36943 * 119.99913 * 264.14199 * 4 3 2 6 6 H 1.08003 * 119.99627 * 187.83787 * 5 4 3 7 7 C 1.38807 * 119.99872 * 7.84429 * 5 4 3 8 8 N 1.31617 * 120.00414 * 25.85802 * 7 5 4 9 9 Si 1.86798 * 119.99646 * 205.86155 * 7 5 4 10 10 H 1.48498 * 109.47418 * 84.98778 * 9 7 5 11 11 H 1.48504 * 109.47170 * 204.98499 * 9 7 5 12 12 H 1.48501 * 109.47271 * 324.98528 * 9 7 5 13 13 C 1.46505 * 120.00157 * 84.14206 * 4 3 2 14 14 C 1.50696 * 109.47218 * 269.99976 * 13 4 3 15 15 N 1.34483 * 126.16377 * 90.02465 * 14 13 4 16 16 C 1.30250 * 108.69745 * 180.02562 * 15 14 13 17 17 O 1.33966 * 108.76571 * 359.97438 * 16 15 14 18 18 C 1.34324 * 126.16812 * 270.02482 * 14 13 4 19 19 C 1.50707 * 126.44241 * 0.02562 * 18 14 13 20 20 H 1.09005 * 109.47326 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47674 * 300.00138 * 1 2 3 22 22 H 1.08999 * 109.46956 * 60.00587 * 1 2 3 23 23 H 1.08990 * 109.47216 * 239.99705 * 2 1 3 24 24 H 1.08999 * 109.46956 * 119.99413 * 2 1 3 25 25 H 1.09001 * 109.47045 * 59.99477 * 3 2 1 26 26 H 1.09004 * 109.46956 * 299.99965 * 3 2 1 27 27 H 0.96997 * 120.00001 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47142 * 149.99803 * 13 4 3 29 29 H 1.09002 * 109.46795 * 30.00014 * 13 4 3 30 30 H 1.08001 * 125.61594 * 179.97438 * 16 15 14 31 31 H 1.09003 * 109.46823 * 90.00242 * 19 18 14 32 32 H 1.09003 * 109.46948 * 209.99698 * 19 18 14 33 33 H 1.08998 * 109.47009 * 330.00362 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.5638 1.1807 6 1 5.2615 1.6912 1.1724 7 6 3.5042 1.5229 2.3873 8 7 2.3544 0.8878 2.4703 9 14 4.2145 2.3693 3.8935 10 1 3.8267 3.8027 3.8848 11 1 3.6864 1.7210 5.1208 12 1 5.6952 2.2569 3.8723 13 6 4.2380 1.3129 -1.2612 14 6 4.4893 -0.1449 -1.5486 15 7 3.6819 -0.9680 -2.2408 16 6 4.2273 -2.1500 -2.2826 17 8 5.3917 -2.1110 -1.6214 18 6 5.5602 -0.8564 -1.1596 19 6 6.7297 -0.3474 -0.3569 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 1.6765 1.9564 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 1.8761 0.8589 3.3136 28 1 5.1903 1.8374 -1.1836 29 1 3.6492 1.7464 -2.0696 30 1 3.8095 -3.0186 -2.7700 31 1 6.5262 -0.4802 0.7058 32 1 7.6263 -0.9050 -0.6275 33 1 6.8823 0.7110 -0.5681 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687715998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = 44.692643 kcal Electronic energy + Delta-G solvation = -16160.529124 eV Core-core repulsion = 13610.094981 eV Total energy + Delta-G solvation = -2550.434142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.58949 -36.36034 -34.02876 -32.40506 -31.68778 -30.70445 -27.24993 -25.45592 -25.12328 -22.07935 -21.41165 -20.01374 -19.64992 -16.74344 -16.49096 -15.98132 -14.87527 -14.38614 -13.73523 -13.51890 -13.20789 -12.99771 -12.75092 -12.48499 -12.02876 -11.74395 -11.37164 -11.14676 -10.94903 -10.63315 -10.51941 -10.39395 -10.01522 -9.92785 -9.67500 -9.60113 -9.02810 -8.26845 -7.91400 -6.87982 -5.73982 -3.04561 2.15639 3.37726 3.41101 3.42994 3.47824 3.50624 4.53257 4.79903 5.34610 5.49580 5.63757 5.70093 5.77353 5.94011 6.18077 6.35212 6.39007 6.46276 6.55861 6.66089 6.69394 6.78783 6.85438 7.04528 7.12316 7.39153 7.45835 7.69622 7.92810 8.21813 8.37415 8.46050 9.26011 9.88146 10.34772 11.28524 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.011993 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.840359 B = 2334.097377 C = 3082.451976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C 0.175 3.825 4 N -0.583 5.583 5 C -0.251 4.251 6 H 0.075 0.925 7 C -0.001 4.001 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.282 1.282 13 C 0.220 3.780 14 C -0.010 4.010 15 N -0.470 5.470 16 C 0.137 3.863 17 O -0.218 6.218 18 C -0.053 4.053 19 C -0.056 4.056 20 H 0.029 0.971 21 H 0.047 0.953 22 H 0.030 0.970 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.003 0.997 27 H 0.251 0.749 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.237 0.763 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -2.805 -6.560 8.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C 0.050 3.950 4 N -0.303 5.303 5 C -0.380 4.380 6 H 0.093 0.907 7 C -0.198 4.198 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.208 1.208 13 C 0.091 3.909 14 C -0.133 4.133 15 N -0.200 5.200 16 C -0.089 4.089 17 O -0.106 6.106 18 C -0.106 4.106 19 C -0.113 4.113 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.253 0.747 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.314 -2.662 -6.657 7.899 hybrid contribution 0.692 -0.295 1.172 1.393 sum 4.007 -2.957 -5.485 7.408 Atomic orbital electron populations 1.21611 0.99031 0.98929 0.99696 1.22144 0.92455 1.00646 1.02129 1.20892 0.81403 0.94718 0.98000 1.44464 1.02061 1.82465 1.01279 1.19281 0.92241 1.42962 0.83534 0.90703 1.24732 0.97633 1.00269 0.97213 1.70204 1.17132 1.41121 1.24789 0.86422 0.78321 0.80078 0.82728 1.21589 1.22108 1.20771 1.19286 0.96587 0.85472 0.89511 1.23162 0.90326 1.01404 0.98362 1.70300 1.30109 1.01195 1.18407 1.27701 0.83316 0.98894 0.99023 1.84311 1.38498 1.32180 1.55572 1.23107 1.01572 0.81722 1.04186 1.20153 0.91501 1.00714 0.98909 0.95181 0.93412 0.95127 0.93954 0.89310 0.89616 0.97915 0.93842 0.91969 0.92688 0.74705 0.89629 0.91944 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.91 37.16 0.37 -2.44 16 2 C -0.13 -3.24 5.61 -26.73 -0.15 -3.39 16 3 C 0.17 4.32 4.92 -4.04 -0.02 4.30 16 4 N -0.58 -14.35 2.52 -174.61 -0.44 -14.79 16 5 C -0.25 -6.53 9.70 -15.06 -0.15 -6.67 16 6 H 0.08 1.86 7.94 -52.48 -0.42 1.44 16 7 C 0.00 -0.02 4.88 -17.43 -0.09 -0.10 16 8 N -0.89 -24.62 8.63 55.49 0.48 -24.15 16 9 Si 0.89 21.14 29.62 -169.99 -5.04 16.11 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.22 4.66 6.04 -5.19 -0.03 4.62 16 14 C -0.01 -0.20 6.18 -82.81 -0.51 -0.71 16 15 N -0.47 -9.52 9.54 -11.18 -0.11 -9.62 16 16 C 0.14 2.31 13.23 52.09 0.69 3.00 16 17 O -0.22 -3.99 10.78 5.37 0.06 -3.93 16 18 C -0.05 -1.02 7.39 -35.69 -0.26 -1.28 16 19 C -0.06 -0.90 10.22 36.01 0.37 -0.53 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 1.02 5.87 -51.93 -0.30 0.72 16 24 H 0.09 2.47 6.34 -51.93 -0.33 2.14 16 25 H 0.09 2.32 5.85 -51.93 -0.30 2.02 16 26 H 0.00 0.06 7.98 -51.93 -0.41 -0.35 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.06 1.20 7.05 -51.93 -0.37 0.83 16 29 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 30 H 0.24 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.30 7.17 -51.93 -0.37 0.92 16 LS Contribution 273.71 15.07 4.12 4.12 Total: -1.00 -29.93 273.71 -5.29 -35.22 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.59 Total: 0.24 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 0.22 Total: -3.20 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.07 Total: -48.55 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.06 Total: -3.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.04 Total: 16.11 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.93 -5.29 -35.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.918 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds