Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46507 * 109.47309 * 2 1 4 4 C 1.36938 * 120.00082 * 270.33270 * 3 2 1 5 5 H 1.08002 * 119.99776 * 326.14250 * 4 3 2 6 6 C 1.38806 * 119.99688 * 146.14438 * 4 3 2 7 7 N 1.31617 * 120.00292 * 336.89717 * 6 4 3 8 8 Si 1.86800 * 119.99951 * 156.89539 * 6 4 3 9 9 H 1.48506 * 109.46890 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47209 * 119.99690 * 8 6 4 11 11 H 1.48503 * 109.47209 * 240.00231 * 8 6 4 12 12 C 1.46501 * 119.99434 * 90.32544 * 3 2 1 13 13 C 1.53007 * 109.46861 * 90.00886 * 12 3 2 14 14 C 1.52993 * 109.47060 * 179.97438 * 13 12 3 15 15 C 1.50699 * 109.47308 * 179.97438 * 14 13 12 16 16 C 1.41380 * 128.00781 * 89.99278 * 15 14 13 17 17 N 1.30185 * 106.39397 * 179.97438 * 16 15 14 18 18 O 1.20916 * 111.60465 * 0.02562 * 17 16 15 19 19 C 1.34040 * 111.57068 * 359.97438 * 18 17 16 20 20 H 1.08995 * 109.47614 * 299.99705 * 1 2 3 21 21 H 1.09007 * 109.46961 * 59.99957 * 1 2 3 22 22 H 1.08998 * 109.47095 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47615 * 240.00289 * 2 1 3 24 24 H 1.08995 * 109.47282 * 120.00259 * 2 1 3 25 25 H 0.97002 * 120.00229 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.47656 * 330.00508 * 12 3 2 27 27 H 1.08999 * 109.46974 * 210.00037 * 12 3 2 28 28 H 1.08993 * 109.47294 * 59.99400 * 13 12 3 29 29 H 1.08999 * 109.46633 * 299.99360 * 13 12 3 30 30 H 1.08999 * 109.47869 * 59.99397 * 14 13 12 31 31 H 1.09003 * 109.47341 * 299.99511 * 14 13 12 32 32 H 1.07994 * 126.80498 * 359.71445 * 16 15 14 33 33 H 1.08003 * 126.78098 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2401 2.0291 -1.1859 5 1 2.5924 1.4774 -2.0449 6 6 2.0120 3.3948 -1.2838 7 7 1.1856 3.9857 -0.4470 8 14 2.8780 4.3941 -2.6032 9 1 3.7484 3.5007 -3.4094 10 1 1.8672 5.0296 -3.4861 11 1 3.7075 5.4462 -1.9628 12 6 2.2693 2.0693 1.2688 13 6 3.7167 1.8281 1.7021 14 6 3.9790 2.5472 3.0268 15 6 5.4044 2.3092 3.4540 16 6 6.5469 3.0819 3.1434 17 7 7.5543 2.4992 3.7269 18 8 7.2079 1.5111 4.3317 19 6 5.8877 1.3055 4.2247 20 1 -0.3634 0.5137 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.0265 4.9402 -0.5153 26 1 1.5926 1.6838 2.0313 27 1 2.1016 3.1388 1.1414 28 1 4.3933 2.2137 0.9396 29 1 3.8843 0.7587 1.8295 30 1 3.3024 2.1621 3.7896 31 1 3.8115 3.6167 2.8991 32 1 6.5785 3.9757 2.5382 33 1 5.3210 0.4989 4.6660 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687721546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = 51.106306 kcal Electronic energy + Delta-G solvation = -15278.413645 eV Core-core repulsion = 12728.257620 eV Total energy + Delta-G solvation = -2550.156025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.86200 -38.19277 -36.21358 -33.76867 -33.62376 -32.20547 -30.24840 -27.57826 -25.51130 -23.90598 -23.33655 -21.87529 -21.41321 -18.85430 -18.50335 -18.42585 -16.82037 -16.05896 -15.96561 -15.53395 -15.16340 -14.56150 -14.22422 -13.96345 -13.70607 -13.36908 -12.99405 -12.87415 -12.68304 -12.46261 -12.23522 -12.10163 -11.88095 -11.79050 -11.47638 -11.23214 -11.16981 -10.50124 -10.23313 -8.55460 -7.78604 -5.35721 0.63749 1.32967 1.43213 1.47720 1.56404 2.45739 2.52690 3.25617 3.41028 3.74534 3.86060 4.08461 4.33034 4.45942 4.51475 4.66870 4.74171 4.81905 4.85194 4.91753 4.96426 5.10487 5.16176 5.23655 5.32390 5.36609 5.58203 5.61938 5.71670 5.98426 6.50370 7.21692 7.33097 7.94401 8.42800 9.16448 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.007640 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.317634 B = 3664.182840 C = 4448.983909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 N -0.605 5.605 4 C -0.261 4.261 5 H 0.052 0.948 6 C -0.036 4.036 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.288 1.288 12 C 0.142 3.858 13 C -0.110 4.110 14 C -0.031 4.031 15 C -0.204 4.204 16 C -0.021 4.021 17 N -0.398 5.398 18 O 0.089 5.911 19 C -0.046 4.046 20 H 0.034 0.966 21 H 0.023 0.977 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.250 0.750 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.193 0.807 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -5.582 9.338 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 N -0.326 5.326 4 C -0.391 4.391 5 H 0.069 0.931 6 C -0.233 4.233 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.219 1.219 11 H -0.215 1.215 12 C 0.016 3.984 13 C -0.150 4.150 14 C -0.070 4.070 15 C -0.208 4.208 16 C -0.199 4.199 17 N -0.103 5.103 18 O 0.025 5.975 19 C -0.127 4.127 20 H 0.053 0.947 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.210 0.790 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 6.393 -5.191 9.404 12.500 hybrid contribution -0.645 0.991 -1.193 1.680 sum 5.748 -4.200 8.211 10.867 Atomic orbital electron populations 1.22142 0.99039 1.00057 0.99869 1.21022 0.92487 0.86203 0.99276 1.44168 1.75137 1.11000 1.02281 1.19270 1.36980 0.91621 0.91263 0.93059 1.25609 0.98292 0.99329 1.00096 1.70100 1.34874 1.09945 1.40888 0.85534 0.78444 0.78907 0.79541 1.19750 1.21922 1.21504 1.20932 0.92176 0.99925 0.85324 1.21912 0.98847 0.99183 0.95030 1.19793 0.88835 1.01170 0.97198 1.21664 0.98205 0.97683 1.03274 1.25322 0.88817 1.03419 1.02328 1.73832 1.25352 0.99625 1.11474 1.84733 1.24661 1.34075 1.54035 1.26516 0.83074 1.02001 1.01122 0.94675 0.95785 0.91456 0.94237 0.92271 0.94049 0.95023 0.91424 0.95243 0.92765 0.88690 0.91594 0.78968 0.72677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 10.24 71.98 0.74 -5.06 16 2 C 0.14 5.45 6.39 86.38 0.55 6.01 16 3 N -0.60 -29.20 2.45 -702.00 -1.72 -30.92 16 4 C -0.26 -14.15 9.49 84.03 0.80 -13.35 16 5 H 0.05 2.82 7.93 -2.91 -0.02 2.80 16 6 C -0.04 -1.98 4.95 84.86 0.42 -1.56 16 7 N -0.91 -52.12 11.31 21.65 0.24 -51.87 16 8 Si 0.95 44.44 29.61 68.60 2.03 46.47 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.14 6.26 5.29 86.38 0.46 6.72 16 13 C -0.11 -3.98 5.52 30.59 0.17 -3.81 16 14 C -0.03 -0.89 5.80 29.85 0.17 -0.72 16 15 C -0.20 -5.39 5.58 -19.73 -0.11 -5.50 16 16 C -0.02 -0.60 12.16 85.71 1.04 0.44 16 17 N -0.40 -11.86 12.07 -59.25 -0.72 -12.57 16 18 O 0.09 2.28 11.20 71.64 0.80 3.08 16 19 C -0.05 -0.96 12.26 67.18 0.82 -0.14 16 20 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.04 1.57 8.04 -2.38 -0.02 1.56 16 24 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 25 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 26 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 27 H 0.07 3.48 5.31 -2.39 -0.01 3.47 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.19 5.05 8.06 -2.91 -0.02 5.02 16 33 H 0.26 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -63.50 284.48 6.78 -56.72 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.07 Total: 6.07 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 5.06 Total: -16.97 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -2.19 Total: -95.37 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.80 Total: 3.08 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.50 6.78 -56.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687721546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.827 kcal (2) G-P(sol) polarization free energy of solvation -63.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds