Wall clock time and date at job start Mon Mar 30 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99563 * 2 1 4 4 C 1.53000 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46932 * 65.00238 * 4 3 2 6 6 C 1.36932 * 119.99679 * 269.99252 * 5 4 3 7 7 H 1.08009 * 119.99750 * 144.96141 * 6 5 4 8 8 C 1.38809 * 120.00363 * 324.96855 * 6 5 4 9 9 N 1.31616 * 120.00334 * 157.15650 * 8 6 5 10 10 Si 1.86801 * 119.99907 * 337.14696 * 8 6 5 11 11 H 1.48504 * 109.46945 * 95.15727 * 10 8 6 12 12 H 1.48497 * 109.47181 * 215.15868 * 10 8 6 13 13 H 1.48500 * 109.46796 * 335.15866 * 10 8 6 14 14 C 1.46501 * 120.00151 * 89.99853 * 5 4 3 15 15 C 1.53001 * 109.47229 * 269.40517 * 14 5 4 16 16 C 1.47195 * 115.55883 * 323.92468 * 15 14 5 17 17 N 3.42132 * 90.24126 * 261.86176 * 2 1 3 18 18 C 1.52995 * 117.49907 * 109.61296 * 15 14 5 19 19 C 1.52997 * 117.49769 * 178.23752 * 15 14 5 20 20 H 1.08999 * 109.47105 * 299.99136 * 1 2 3 21 21 H 1.08992 * 109.47712 * 60.00467 * 1 2 3 22 22 H 1.09011 * 109.46571 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.46991 * 59.99725 * 3 2 1 24 24 H 1.09004 * 109.46946 * 300.00043 * 3 2 1 25 25 H 1.08994 * 109.47364 * 304.99891 * 4 3 2 26 26 H 1.09005 * 109.46790 * 184.99970 * 4 3 2 27 27 H 0.97003 * 120.00252 * 180.02562 * 9 8 6 28 28 H 1.09003 * 109.47093 * 149.39990 * 14 5 4 29 29 H 1.09002 * 109.46753 * 29.40717 * 14 5 4 30 30 H 1.09001 * 117.49869 * 214.97447 * 18 15 14 31 31 H 1.08997 * 117.50032 * 0.02562 * 18 15 14 32 32 H 1.09001 * 117.49875 * 359.97438 * 19 15 14 33 33 H 1.09007 * 117.49536 * 144.99483 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5647 -1.2528 6 6 4.0968 -0.7967 -1.3369 7 1 3.8604 -1.3038 -2.2607 8 6 4.5234 -1.5250 -0.2349 9 7 4.2269 -2.8035 -0.1360 10 14 5.5185 -0.6905 1.1078 11 1 4.6099 -0.2527 2.1978 12 1 6.5176 -1.6461 1.6500 13 1 6.2191 0.4908 0.5430 14 6 4.2862 1.4009 -2.4149 15 6 3.0257 1.5847 -3.2625 16 6 2.1319 0.4173 -3.3327 17 7 1.4434 -0.4843 -3.3868 18 6 2.3792 2.9712 -3.2758 19 6 3.1342 2.4673 -4.5075 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5137 -0.8899 22 1 -0.3633 -1.0278 0.0005 23 1 1.6884 1.8464 0.8899 24 1 1.6884 1.8465 -0.8900 25 1 3.8514 0.5685 0.8409 26 1 3.9783 2.1768 0.0889 27 1 4.5246 -3.3123 0.6343 28 1 5.0594 0.9189 -3.0131 29 1 4.6421 2.3743 -2.0772 30 1 1.2920 3.0190 -3.3366 31 1 2.8520 3.7527 -2.6810 32 1 4.1033 2.9175 -4.7224 33 1 2.5438 2.1833 -5.3787 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691599446.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:13 Heat of formation + Delta-G solvation = 45.835365 kcal Electronic energy + Delta-G solvation = -16257.541005 eV Core-core repulsion = 13707.156415 eV Total energy + Delta-G solvation = -2550.384590 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.50290 -36.98621 -35.01264 -34.63529 -31.46038 -29.32359 -26.55442 -25.60495 -23.32546 -22.38146 -22.15463 -20.83810 -16.79129 -16.58679 -15.86312 -15.35073 -14.77389 -14.59458 -14.13861 -13.59350 -13.35345 -12.99644 -12.60758 -12.30768 -12.00129 -11.95068 -11.65114 -11.43381 -11.21606 -11.07861 -10.85661 -10.59620 -10.39498 -10.22199 -9.66695 -9.56177 -9.37948 -8.76882 -8.36657 -6.86180 -5.81394 -3.22654 3.29033 3.39253 3.52520 3.55800 3.72698 4.36681 4.48746 4.61911 4.66045 4.80152 5.09722 5.24372 5.47995 5.63596 5.69723 5.76465 5.86023 5.92511 6.01843 6.06293 6.07440 6.16102 6.19422 6.22295 6.29333 6.36411 6.56358 6.75424 8.02581 8.18485 8.49588 8.57815 9.06158 9.85578 10.16612 11.34435 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.012848 C = 0.011219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.127640 B = 2178.790050 C = 2495.111735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.044 3.956 4 C 0.133 3.867 5 N -0.592 5.592 6 C -0.254 4.254 7 H 0.077 0.923 8 C 0.045 3.955 9 N -0.894 5.894 10 Si 0.875 3.125 11 H -0.288 1.288 12 H -0.305 1.305 13 H -0.271 1.271 14 C 0.185 3.815 15 C -0.054 4.054 16 C 0.256 3.744 17 N -0.429 5.429 18 C -0.158 4.158 19 C -0.157 4.157 20 H 0.024 0.976 21 H 0.025 0.975 22 H 0.076 0.924 23 H 0.025 0.975 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.259 0.741 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 14.122 -3.322 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.259 6.259 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.094 0.906 8 C -0.156 4.156 9 N -0.535 5.535 10 Si 0.706 3.294 11 H -0.216 1.216 12 H -0.234 1.234 13 H -0.196 1.196 14 C 0.056 3.944 15 C -0.060 4.060 16 C -0.061 4.061 17 N -0.103 5.103 18 C -0.197 4.197 19 C -0.196 4.196 20 H 0.042 0.958 21 H 0.044 0.956 22 H 0.095 0.905 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.099 12.363 -3.298 13.166 hybrid contribution 0.349 0.884 1.006 1.384 sum -2.750 13.248 -2.292 13.723 Atomic orbital electron populations 1.22577 0.83970 1.01741 0.97837 1.88326 1.16696 1.26146 1.94721 1.23279 0.97356 0.85368 0.97543 1.21373 0.90485 0.96524 0.90929 1.44023 1.75732 1.03915 1.07581 1.18557 1.39738 0.79505 1.00465 0.90593 1.25254 0.98101 0.94780 0.97423 1.69909 1.45356 1.08288 1.29904 0.86996 0.80698 0.79119 0.82604 1.21619 1.23372 1.19614 1.20499 0.90302 0.95105 0.88452 1.19647 0.98462 0.85162 1.02735 1.27149 0.92903 0.93296 0.92800 1.81081 1.11280 1.09098 1.08874 1.23113 0.99800 0.95447 1.01328 1.23067 1.02679 1.02125 0.91724 0.95778 0.95609 0.90524 0.95716 0.94307 0.91995 0.92586 0.93065 0.91011 0.92457 0.89049 0.87613 0.87383 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.01 101.05 1.11 1.80 16 2 O -0.34 -8.01 10.18 -35.23 -0.36 -8.37 16 3 C 0.04 0.87 6.28 37.16 0.23 1.10 16 4 C 0.13 2.78 4.98 -4.04 -0.02 2.76 16 5 N -0.59 -13.32 1.70 -173.23 -0.29 -13.61 16 6 C -0.25 -7.05 8.54 -15.06 -0.13 -7.18 16 7 H 0.08 2.37 7.44 -52.48 -0.39 1.98 16 8 C 0.04 1.31 5.31 -17.43 -0.09 1.22 16 9 N -0.89 -28.29 13.97 55.49 0.78 -27.52 16 10 Si 0.87 22.28 24.97 -169.99 -4.24 18.03 16 11 H -0.29 -7.25 6.65 56.52 0.38 -6.87 16 12 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.19 3.22 5.87 -4.04 -0.02 3.20 16 15 C -0.05 -0.84 1.82 -157.30 -0.29 -1.13 16 16 C 0.26 5.24 12.87 -20.77 -0.27 4.98 16 17 N -0.43 -10.05 18.54 42.14 0.78 -9.26 16 18 C -0.16 -1.85 9.18 -26.73 -0.25 -2.09 16 19 C -0.16 -1.76 9.93 -26.73 -0.27 -2.03 16 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 21 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.71 6.65 -51.93 -0.35 0.36 16 25 H 0.06 1.48 2.96 -51.93 -0.15 1.33 16 26 H 0.06 0.96 7.89 -51.93 -0.41 0.56 16 27 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 28 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 29 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.11 1.02 8.06 -51.93 -0.42 0.61 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 280.01 15.07 4.22 4.22 Total: -1.00 -34.29 280.01 -3.76 -38.05 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.65 Total: -4.15 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 0.02 Total: 2.62 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 1.26 Total: -50.40 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.36 Total: -8.37 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.24 Total: 18.03 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.29 -3.76 -38.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691599446.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.885 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds