Wall clock time and date at job start Mon Mar 30 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99655 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99994 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.46889 * 90.00281 * 8 6 4 10 10 H 1.48510 * 109.46825 * 210.00042 * 8 6 4 11 11 H 1.48494 * 109.47200 * 329.99914 * 8 6 4 12 12 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99897 * 179.73022 * 12 2 1 14 14 C 1.50695 * 119.99635 * 0.02562 * 12 2 1 15 15 C 1.53004 * 119.52542 * 109.30994 * 14 12 2 16 16 C 1.52997 * 60.54800 * 111.73459 * 15 14 12 17 17 H 1.08996 * 119.52943 * 248.26594 * 16 15 14 18 18 C 1.54381 * 118.88722 * 91.23308 * 16 15 14 19 19 N 1.48558 * 104.59968 * 272.74825 * 18 16 15 20 20 C 1.48562 * 104.21726 * 39.48356 * 19 18 16 21 21 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 22 22 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 23 23 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 24 24 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 25 25 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 26 26 H 0.97008 * 119.99482 * 180.02562 * 7 6 4 27 27 H 1.08996 * 117.44221 * 219.38597 * 15 14 12 28 28 H 1.08997 * 117.44165 * 4.08536 * 15 14 12 29 29 H 1.09004 * 110.40928 * 31.53105 * 18 16 15 30 30 H 1.09004 * 110.40957 * 153.85254 * 18 16 15 31 31 H 1.00901 * 110.99979 * 279.93439 * 19 18 16 32 32 H 1.09010 * 110.41022 * 201.73723 * 20 19 18 33 33 H 1.09001 * 110.41563 * 79.29725 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.3459 3.2571 -2.9127 8 14 3.7352 3.9279 -0.2529 9 1 5.1084 3.5056 0.1226 10 1 3.7511 5.3548 -0.6643 11 1 2.8294 3.7586 0.9116 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 -0.0044 14 6 1.3853 -2.4723 0.0005 15 6 1.3900 -3.3457 -1.2557 16 6 2.1145 -3.8317 0.0011 17 1 3.2024 -3.8996 0.0016 18 6 1.3431 -4.7002 1.0179 19 7 0.6848 -3.7226 1.9222 20 6 0.2346 -2.6340 1.0169 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5139 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1383 0.5138 26 1 3.8235 4.0827 -3.0899 27 1 0.4590 -3.8451 -1.5237 28 1 2.0040 -3.0166 -2.0940 29 1 0.5964 -5.3093 0.5082 30 1 2.0321 -5.3336 1.5767 31 1 1.3337 -3.3741 2.6118 32 1 0.0891 -1.7099 1.5766 33 1 -0.6855 -2.9196 0.5072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693297650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:28 Heat of formation + Delta-G solvation = 10.567421 kcal Electronic energy + Delta-G solvation = -15794.890486 eV Core-core repulsion = 13242.976563 eV Total energy + Delta-G solvation = -2551.913923 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.47908 -37.93048 -35.03420 -32.76819 -32.55172 -29.43069 -27.77052 -26.10142 -24.01229 -23.11053 -21.34434 -20.38300 -18.27825 -16.97575 -16.70454 -16.05900 -15.23003 -14.79867 -14.41334 -14.02943 -13.75545 -13.44550 -12.76942 -12.53862 -12.30587 -12.21231 -11.88918 -11.56627 -11.46465 -11.41954 -10.95510 -10.55581 -10.43651 -10.18951 -9.84065 -9.56294 -9.23663 -8.71792 -8.61299 -7.74082 -6.11082 -4.10093 3.04236 3.27188 3.33116 3.34885 3.57586 3.87033 4.19913 4.37350 4.61209 4.67170 4.92177 4.94784 5.17986 5.22312 5.46181 5.55862 5.66031 5.71095 5.74864 5.77166 5.87908 5.99668 6.16644 6.19067 6.45827 6.66587 6.90010 7.15506 7.30272 7.57978 8.21012 8.44200 8.89415 8.95231 9.48965 11.02305 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047071 B = 0.007307 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.699684 B = 3831.157841 C = 3917.982302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.592 5.592 3 C 0.216 3.784 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.548 3.452 13 O -0.541 6.541 14 C -0.203 4.203 15 C -0.108 4.108 16 C -0.169 4.169 17 H 0.120 0.880 18 C 0.068 3.932 19 N -0.666 5.666 20 C 0.075 3.925 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.265 0.735 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.340 0.660 32 H 0.086 0.914 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 -12.179 7.720 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.323 5.323 3 C 0.095 3.905 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.334 3.666 13 O -0.418 6.418 14 C -0.209 4.209 15 C -0.146 4.146 16 C -0.190 4.190 17 H 0.138 0.862 18 C -0.061 4.061 19 N -0.291 5.291 20 C -0.055 4.055 21 H 0.064 0.936 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.105 0.895 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.679 -12.345 7.761 16.480 hybrid contribution 1.268 1.282 0.169 1.811 sum -6.411 -11.063 7.930 15.046 Atomic orbital electron populations 1.21793 0.80909 1.03163 1.00254 1.47713 1.06356 1.06755 1.71437 1.19684 0.92405 0.79950 0.98449 1.21323 1.37065 1.07197 0.91227 0.90776 1.24864 0.95212 0.97333 0.95623 1.69902 1.41402 1.23592 1.18649 0.86839 0.80115 0.79776 0.82898 1.19922 1.20970 1.19058 1.19083 0.87006 0.83592 0.76905 1.90663 1.13788 1.86996 1.50403 1.23392 1.01692 0.91959 1.03821 1.23009 1.01948 0.98585 0.91043 1.24278 1.00416 0.94090 1.00193 0.86224 1.22586 0.96381 0.94681 0.92495 1.63550 1.39475 1.12709 1.13381 1.22763 0.95531 0.95050 0.92129 0.93569 0.90625 0.91699 0.95100 0.94656 0.92528 0.88170 0.87688 0.89867 0.90223 0.84498 0.89521 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 8.93 59.85 0.53 1.83 16 2 N -0.59 -12.42 2.86 -182.96 -0.52 -12.95 16 3 C 0.22 5.36 4.23 -5.19 -0.02 5.34 16 4 C -0.53 -15.43 9.94 -34.44 -0.34 -15.77 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 8 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 C 0.55 11.52 7.32 -10.98 -0.08 11.44 16 13 O -0.54 -13.78 16.40 5.56 0.09 -13.69 16 14 C -0.20 -3.12 1.83 -154.27 -0.28 -3.40 16 15 C -0.11 -1.46 9.92 -26.73 -0.27 -1.73 16 16 C -0.17 -2.28 6.74 -89.24 -0.60 -2.88 16 17 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 18 C 0.07 0.73 7.29 -2.18 -0.02 0.71 16 19 N -0.67 -7.70 7.62 -109.65 -0.84 -8.54 16 20 C 0.07 0.92 5.42 -2.18 -0.01 0.91 16 21 H 0.05 0.60 6.94 -51.93 -0.36 0.24 16 22 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 23 H 0.06 0.88 6.16 -51.93 -0.32 0.56 16 24 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 25 H 0.04 0.94 6.85 -51.92 -0.36 0.58 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.34 3.89 8.92 -39.29 -0.35 3.54 16 32 H 0.09 1.07 5.75 -51.92 -0.30 0.77 16 33 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 271.18 15.07 4.09 4.09 Total: -1.00 -33.99 271.18 -6.86 -40.85 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.60 Total: 1.80 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.18 Total: -1.54 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.59 Total: -48.57 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.99 -6.86 -40.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693297650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.416 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds