Wall clock time and date at job start Mon Mar 30 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99655 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99994 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.46889 * 90.00281 * 8 6 4 10 10 H 1.48510 * 109.46825 * 210.00042 * 8 6 4 11 11 H 1.48494 * 109.47200 * 329.99914 * 8 6 4 12 12 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99897 * 179.73022 * 12 2 1 14 14 C 1.50695 * 119.99635 * 0.02562 * 12 2 1 15 15 C 1.53004 * 119.52542 * 109.30994 * 14 12 2 16 16 C 1.52997 * 60.54800 * 111.73459 * 15 14 12 17 17 H 1.08996 * 119.52943 * 248.26594 * 16 15 14 18 18 C 1.54381 * 118.88722 * 91.23308 * 16 15 14 19 19 N 1.48558 * 104.59968 * 272.74825 * 18 16 15 20 20 C 1.48562 * 104.21726 * 39.48356 * 19 18 16 21 21 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 22 22 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 23 23 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 24 24 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 25 25 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 26 26 H 0.97008 * 119.99482 * 180.02562 * 7 6 4 27 27 H 1.08996 * 117.44221 * 219.38597 * 15 14 12 28 28 H 1.08997 * 117.44165 * 4.08536 * 15 14 12 29 29 H 1.09004 * 110.40928 * 31.53105 * 18 16 15 30 30 H 1.09004 * 110.40957 * 153.85254 * 18 16 15 31 31 H 1.00901 * 110.99979 * 279.93439 * 19 18 16 32 32 H 1.09010 * 110.41022 * 201.73723 * 20 19 18 33 33 H 1.09001 * 110.41563 * 79.29725 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.3459 3.2571 -2.9127 8 14 3.7352 3.9279 -0.2529 9 1 5.1084 3.5056 0.1226 10 1 3.7511 5.3548 -0.6643 11 1 2.8294 3.7586 0.9116 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 -0.0044 14 6 1.3853 -2.4723 0.0005 15 6 1.3900 -3.3457 -1.2557 16 6 2.1145 -3.8317 0.0011 17 1 3.2024 -3.8996 0.0016 18 6 1.3431 -4.7002 1.0179 19 7 0.6848 -3.7226 1.9222 20 6 0.2346 -2.6340 1.0169 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5139 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1383 0.5138 26 1 3.8235 4.0827 -3.0899 27 1 0.4590 -3.8451 -1.5237 28 1 2.0040 -3.0166 -2.0940 29 1 0.5964 -5.3093 0.5082 30 1 2.0321 -5.3336 1.5767 31 1 1.3337 -3.3741 2.6118 32 1 0.0891 -1.7099 1.5766 33 1 -0.6855 -2.9196 0.5072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693297650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:28 Heat of formation + Delta-G solvation = -16.252260 kcal Electronic energy + Delta-G solvation = -15796.053474 eV Core-core repulsion = 13242.976563 eV Total energy + Delta-G solvation = -2553.076912 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.74177 -39.39160 -36.77475 -34.75365 -33.76799 -31.10054 -29.11367 -27.57185 -25.42902 -24.52505 -22.69913 -21.62456 -19.68369 -19.19495 -17.95246 -17.51980 -16.85732 -16.25579 -16.03025 -15.27585 -15.09600 -14.77593 -14.51046 -14.05433 -13.78157 -13.65453 -13.39233 -12.86777 -12.82559 -12.66863 -12.46357 -12.40601 -12.06438 -11.79980 -11.60516 -10.95074 -10.87985 -10.70038 -9.78978 -9.46945 -8.39026 -6.44946 1.29000 1.33206 1.41969 1.55144 2.15378 2.26822 2.56483 2.95027 3.22803 3.55208 3.58992 3.66738 4.00283 4.11756 4.35198 4.49154 4.55092 4.64035 4.70347 4.78485 4.81078 4.90465 4.93264 4.97072 4.99822 5.13330 5.39684 5.53915 5.57850 6.17825 6.25594 6.55929 6.61363 7.14934 7.32448 8.78053 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047071 B = 0.007307 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.699684 B = 3831.157841 C = 3917.982302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.600 5.600 3 C 0.223 3.777 4 C -0.540 4.540 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.944 5.944 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.237 1.237 12 C 0.535 3.465 13 O -0.602 6.602 14 C -0.217 4.217 15 C -0.100 4.100 16 C -0.163 4.163 17 H 0.096 0.904 18 C 0.077 3.923 19 N -0.662 5.662 20 C 0.085 3.915 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.016 0.984 26 H 0.270 0.730 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.339 0.661 32 H 0.087 0.913 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -13.095 9.838 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C 0.101 3.899 4 C -0.579 4.579 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.584 5.584 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.160 1.160 12 C 0.324 3.676 13 O -0.484 6.484 14 C -0.222 4.222 15 C -0.138 4.138 16 C -0.184 4.184 17 H 0.114 0.886 18 C -0.052 4.052 19 N -0.287 5.287 20 C -0.045 4.045 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.157 0.843 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.721 -13.282 9.888 19.201 hybrid contribution 1.904 1.510 -0.593 2.502 sum -7.816 -11.772 9.295 16.914 Atomic orbital electron populations 1.22109 0.77517 1.03976 1.02889 1.47838 1.08550 1.05589 1.70965 1.19365 0.92657 0.82463 0.95419 1.21543 1.37132 1.06874 0.92300 0.95552 1.25886 0.95170 0.98907 0.98784 1.70053 1.42515 1.24534 1.21313 0.85690 0.79490 0.77844 0.79778 1.20325 1.19628 1.15956 1.20116 0.86751 0.85410 0.75287 1.90616 1.16631 1.88091 1.53029 1.23385 1.03284 0.89351 1.06161 1.23103 1.03144 0.97665 0.89842 1.24411 0.99681 0.93535 1.00765 0.88581 1.22681 0.96800 0.94132 0.91610 1.63611 1.39442 1.12482 1.13124 1.22821 0.94913 0.95511 0.91248 0.89843 0.91501 0.89310 0.92779 0.96620 0.92145 0.84263 0.90437 0.87627 0.88731 0.84605 0.89508 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 8.93 127.77 1.14 3.38 16 2 N -0.60 -25.09 2.86 -851.14 -2.43 -27.52 16 3 C 0.22 11.16 4.23 85.63 0.36 11.52 16 4 C -0.54 -32.57 9.94 25.60 0.25 -32.32 16 5 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 6 C 0.01 0.64 5.47 84.65 0.46 1.10 16 7 N -0.94 -60.48 13.96 21.45 0.30 -60.18 16 8 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 9 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 12 C 0.54 22.80 7.32 87.65 0.64 23.44 16 13 O -0.60 -32.05 16.40 -3.01 -0.05 -32.10 16 14 C -0.22 -6.34 1.83 -52.03 -0.10 -6.43 16 15 C -0.10 -2.56 9.92 30.59 0.30 -2.25 16 16 C -0.16 -4.18 6.74 -9.90 -0.07 -4.25 16 17 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 18 C 0.08 1.38 7.29 86.45 0.63 2.01 16 19 N -0.66 -12.92 7.62 -500.83 -3.82 -16.74 16 20 C 0.08 1.77 5.42 86.45 0.47 2.24 16 21 H 0.08 1.84 6.94 -2.39 -0.02 1.82 16 22 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 23 H 0.09 2.15 6.16 -2.39 -0.01 2.14 16 24 H 0.05 2.45 7.13 -2.39 -0.02 2.43 16 25 H 0.02 0.85 6.85 -2.38 -0.02 0.83 16 26 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 27 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.34 6.82 8.92 -89.69 -0.80 6.02 16 32 H 0.09 1.82 5.75 -2.38 -0.01 1.81 16 33 H 0.11 1.85 8.12 -2.39 -0.02 1.83 16 Total: -1.00 -78.37 271.18 0.24 -78.13 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.26 Total: 13.09 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 4.10 Total: -1.55 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -5.95 Total: -104.44 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.05 Total: -32.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -78.37 0.24 -78.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693297650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.880 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds