Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46614 * 2 1 4 4 C 1.50701 * 109.47069 * 240.00321 * 2 1 3 5 5 H 1.08004 * 119.99702 * 239.99731 * 4 2 1 6 6 C 1.37876 * 120.00157 * 59.99641 * 4 2 1 7 7 N 1.31519 * 119.99857 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99819 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47344 * 90.00146 * 8 6 4 10 10 H 1.48505 * 109.46954 * 209.99753 * 8 6 4 11 11 H 1.48501 * 109.47268 * 329.99648 * 8 6 4 12 12 N 1.46496 * 109.47356 * 119.99481 * 2 1 3 13 13 C 1.34772 * 120.00609 * 275.00448 * 12 2 1 14 14 O 1.21279 * 119.99836 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00051 * 180.02562 * 13 12 2 16 16 C 1.57018 * 119.77618 * 249.75154 * 15 13 12 17 17 C 1.52999 * 59.66378 * 248.68926 * 16 15 13 18 18 H 1.09003 * 119.52683 * 112.40182 * 17 16 15 19 19 C 1.54373 * 118.13045 * 267.43791 * 17 16 15 20 20 N 1.48566 * 104.59508 * 89.19926 * 19 17 16 21 21 C 1.48567 * 104.21746 * 320.51675 * 20 19 17 22 22 H 1.09003 * 109.47381 * 299.99509 * 1 2 3 23 23 H 1.09002 * 109.47663 * 60.00034 * 1 2 3 24 24 H 1.09004 * 109.47265 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99136 * 180.02562 * 7 6 4 26 26 H 0.97007 * 119.99421 * 94.99805 * 12 2 1 27 27 H 1.09001 * 118.44380 * 141.81431 * 16 15 13 28 28 H 1.09003 * 116.97272 * 356.22947 * 16 15 13 29 29 H 1.09004 * 110.41558 * 330.42123 * 19 17 16 30 30 H 1.08997 * 110.51660 * 208.02884 * 19 17 16 31 31 H 1.00901 * 110.99803 * 80.07105 * 20 19 17 32 32 H 1.09003 * 110.40839 * 158.25783 * 21 20 19 33 33 H 1.08989 * 110.41133 * 280.70460 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1587 2.4115 15 6 2.6500 -0.7284 3.5874 16 6 1.6706 -1.0053 4.7831 17 6 2.8131 0.0007 4.9370 18 1 2.5843 1.0606 5.0483 19 6 4.1561 -0.5046 5.5062 20 7 4.9230 -0.9519 4.3150 21 6 3.9081 -1.6131 3.4548 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7079 1.1608 -3.4844 26 1 2.2490 -1.6317 1.1526 27 1 1.7586 -1.9510 5.3180 28 1 0.6594 -0.6077 4.6962 29 1 3.9904 -1.3396 6.1871 30 1 4.6825 0.3020 6.0163 31 1 5.3436 -0.1672 3.8402 32 1 4.2468 -1.6394 2.4190 33 1 3.7036 -2.6213 3.8146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693297661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = -6.666394 kcal Electronic energy + Delta-G solvation = -15552.222926 eV Core-core repulsion = 12999.561689 eV Total energy + Delta-G solvation = -2552.661237 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.17241 -37.85660 -34.80439 -32.58299 -32.39201 -29.45366 -27.97944 -25.28006 -23.92409 -22.92424 -21.04737 -20.06559 -18.92673 -17.40064 -16.21937 -15.73289 -15.13068 -14.63698 -14.29499 -13.94677 -13.64363 -13.40162 -12.69346 -12.43497 -12.09467 -11.69526 -11.62025 -11.46862 -11.14305 -10.97001 -10.76679 -10.43130 -10.33883 -10.25807 -9.80798 -9.19696 -9.06327 -8.70475 -8.56921 -7.93328 -6.14119 -4.23653 3.01174 3.23408 3.30230 3.32529 3.72808 3.95314 4.25430 4.36723 4.58575 4.71273 4.96504 5.17426 5.18470 5.27166 5.53413 5.62450 5.74188 5.79137 5.89480 5.99618 6.17046 6.50008 6.80169 6.94226 7.12664 7.20722 7.43217 7.54336 7.67766 7.89116 8.12700 8.65250 8.76190 9.10810 9.44197 10.91931 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.006765 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.382405 B = 4138.017229 C = 4495.588616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.701 5.701 13 C 0.544 3.456 14 O -0.556 6.556 15 C -0.208 4.208 16 C -0.113 4.113 17 C -0.164 4.164 18 H 0.118 0.882 19 C 0.066 3.934 20 N -0.665 5.665 21 C 0.078 3.922 22 H 0.013 0.987 23 H 0.090 0.910 24 H 0.027 0.973 25 H 0.264 0.736 26 H 0.389 0.611 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.341 0.659 32 H 0.085 0.915 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.721 -5.304 12.235 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.328 3.672 14 O -0.436 6.436 15 C -0.213 4.213 16 C -0.151 4.151 17 C -0.184 4.184 18 H 0.136 0.864 19 C -0.064 4.064 20 N -0.290 5.290 21 C -0.052 4.052 22 H 0.032 0.968 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.222 0.778 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.103 0.897 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.802 -4.941 12.358 13.841 hybrid contribution -0.299 -0.035 -1.326 1.360 sum 3.502 -4.976 11.031 12.599 Atomic orbital electron populations 1.22077 0.98451 0.99143 1.00851 1.18762 0.91064 0.93955 0.79994 0.93457 1.21215 1.32504 1.13228 0.90290 0.92029 1.24897 0.94804 0.94933 0.99094 1.69910 1.35860 1.22453 1.23907 0.86433 0.79189 0.79271 0.82130 1.20504 1.21047 1.19817 1.46453 1.64597 1.13495 1.10243 1.19058 0.78237 0.86480 0.83399 1.90651 1.51881 1.16011 1.85035 1.24148 1.02382 1.04814 0.89971 1.23622 0.94931 1.00039 0.96492 1.24247 0.97561 0.99592 0.97047 0.86362 1.22623 0.90182 0.99694 0.93873 1.63522 1.27771 1.30384 1.07346 1.22510 0.87024 0.97151 0.98510 0.96780 0.89100 0.95411 0.92553 0.77812 0.88046 0.88056 0.89922 0.90265 0.84301 0.89666 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.81 2.56 -69.09 -0.18 6.63 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -14.87 4.95 -54.94 -0.27 -15.14 16 13 C 0.54 11.17 7.44 -10.99 -0.08 11.09 16 14 O -0.56 -13.75 16.48 5.56 0.09 -13.65 16 15 C -0.21 -3.15 2.91 -152.10 -0.44 -3.60 16 16 C -0.11 -1.42 10.13 -24.55 -0.25 -1.67 16 17 C -0.16 -2.17 6.63 -89.24 -0.59 -2.76 16 18 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 19 C 0.07 0.72 7.26 -2.18 -0.02 0.70 16 20 N -0.66 -8.15 7.63 -109.66 -0.84 -8.99 16 21 C 0.08 1.01 6.93 -2.18 -0.02 1.00 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.39 7.21 8.26 -40.82 -0.34 6.87 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.34 4.23 8.92 -39.29 -0.35 3.88 16 32 H 0.08 1.16 7.82 -51.93 -0.41 0.76 16 33 H 0.09 1.00 8.14 -51.94 -0.42 0.57 16 LS Contribution 278.19 15.07 4.19 4.19 Total: -1.00 -30.53 278.19 -7.57 -38.09 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.72 Total: 9.06 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.62 Total: -4.80 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.48 Total: -48.54 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.53 -7.57 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693297661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.424 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds