Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46614 * 2 1 4 4 C 1.50701 * 109.47069 * 240.00321 * 2 1 3 5 5 H 1.08004 * 119.99702 * 239.99731 * 4 2 1 6 6 C 1.37876 * 120.00157 * 59.99641 * 4 2 1 7 7 N 1.31519 * 119.99857 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99819 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47344 * 90.00146 * 8 6 4 10 10 H 1.48505 * 109.46954 * 209.99753 * 8 6 4 11 11 H 1.48501 * 109.47268 * 329.99648 * 8 6 4 12 12 N 1.46496 * 109.47356 * 119.99481 * 2 1 3 13 13 C 1.34772 * 120.00609 * 275.00448 * 12 2 1 14 14 O 1.21279 * 119.99836 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00051 * 180.02562 * 13 12 2 16 16 C 1.57018 * 119.77618 * 249.75154 * 15 13 12 17 17 C 1.52999 * 59.66378 * 248.68926 * 16 15 13 18 18 H 1.09003 * 119.52683 * 112.40182 * 17 16 15 19 19 C 1.54373 * 118.13045 * 267.43791 * 17 16 15 20 20 N 1.48566 * 104.59508 * 89.19926 * 19 17 16 21 21 C 1.48567 * 104.21746 * 320.51675 * 20 19 17 22 22 H 1.09003 * 109.47381 * 299.99509 * 1 2 3 23 23 H 1.09002 * 109.47663 * 60.00034 * 1 2 3 24 24 H 1.09004 * 109.47265 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99136 * 180.02562 * 7 6 4 26 26 H 0.97007 * 119.99421 * 94.99805 * 12 2 1 27 27 H 1.09001 * 118.44380 * 141.81431 * 16 15 13 28 28 H 1.09003 * 116.97272 * 356.22947 * 16 15 13 29 29 H 1.09004 * 110.41558 * 330.42123 * 19 17 16 30 30 H 1.08997 * 110.51660 * 208.02884 * 19 17 16 31 31 H 1.00901 * 110.99803 * 80.07105 * 20 19 17 32 32 H 1.09003 * 110.40839 * 158.25783 * 21 20 19 33 33 H 1.08989 * 110.41133 * 280.70460 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1587 2.4115 15 6 2.6500 -0.7284 3.5874 16 6 1.6706 -1.0053 4.7831 17 6 2.8131 0.0007 4.9370 18 1 2.5843 1.0606 5.0483 19 6 4.1561 -0.5046 5.5062 20 7 4.9230 -0.9519 4.3150 21 6 3.9081 -1.6131 3.4548 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7079 1.1608 -3.4844 26 1 2.2490 -1.6317 1.1526 27 1 1.7586 -1.9510 5.3180 28 1 0.6594 -0.6077 4.6962 29 1 3.9904 -1.3396 6.1871 30 1 4.6825 0.3020 6.0163 31 1 5.3436 -0.1672 3.8402 32 1 4.2468 -1.6394 2.4190 33 1 3.7036 -2.6213 3.8146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693297661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = -29.913305 kcal Electronic energy + Delta-G solvation = -15553.230988 eV Core-core repulsion = 12999.561689 eV Total energy + Delta-G solvation = -2553.669299 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45683 -39.37883 -36.74411 -34.36094 -33.61761 -31.23283 -29.20954 -27.38781 -25.09186 -24.29302 -22.45786 -21.54472 -20.54254 -18.82181 -17.83210 -17.31379 -16.88272 -16.06863 -15.91093 -15.19386 -15.00795 -14.78098 -14.44384 -13.93066 -13.68846 -13.10527 -13.03761 -12.88178 -12.78605 -12.67233 -12.40260 -12.33638 -12.17326 -11.54097 -11.16395 -10.95687 -10.70526 -10.59501 -9.87296 -9.73990 -8.20765 -6.38986 1.43668 1.44640 1.55119 1.56870 2.29925 2.47133 2.58122 3.09615 3.26139 3.49646 3.65523 3.92643 4.01263 4.14136 4.52194 4.62937 4.68707 4.75260 4.85424 4.90036 4.91985 4.98927 5.04030 5.15390 5.37991 5.56127 5.56854 5.63342 5.85305 6.04969 6.22786 6.68531 6.90907 7.28362 7.49144 8.85826 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043919 B = 0.006765 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.382405 B = 4138.017229 C = 4495.588616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.696 5.696 13 C 0.539 3.461 14 O -0.608 6.608 15 C -0.228 4.228 16 C -0.090 4.090 17 C -0.160 4.160 18 H 0.098 0.902 19 C 0.073 3.927 20 N -0.665 5.665 21 C 0.086 3.914 22 H 0.009 0.991 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.266 0.734 26 H 0.405 0.595 27 H 0.140 0.860 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.337 0.663 32 H 0.072 0.928 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 -7.747 13.289 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.344 5.344 13 C 0.326 3.674 14 O -0.491 6.491 15 C -0.233 4.233 16 C -0.127 4.127 17 C -0.181 4.181 18 H 0.116 0.884 19 C -0.056 4.056 20 N -0.290 5.290 21 C -0.044 4.044 22 H 0.028 0.972 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.240 0.760 27 H 0.158 0.842 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.784 -7.426 13.441 16.084 hybrid contribution -0.624 0.807 -1.604 1.901 sum 4.160 -6.620 11.837 14.186 Atomic orbital electron populations 1.21896 0.98274 0.99530 0.99459 1.18366 0.91177 0.91797 0.82030 0.98712 1.21533 1.32746 1.13611 0.90695 0.90748 1.25841 0.94807 0.95546 1.02444 1.70062 1.36971 1.23973 1.24702 0.85298 0.79035 0.78022 0.77712 1.19474 1.21191 1.18728 1.46201 1.64615 1.14087 1.09467 1.19973 0.76859 0.86024 0.84549 1.90618 1.53985 1.18483 1.85968 1.24036 1.04667 1.06539 0.88080 1.23796 0.93860 1.01320 0.93744 1.24379 0.99299 0.99001 0.95397 0.88375 1.22732 0.88405 1.01014 0.93477 1.63590 1.27461 1.30311 1.07600 1.22531 0.85699 0.97819 0.98322 0.97229 0.91369 0.93909 0.92479 0.75993 0.84191 0.89187 0.87528 0.88888 0.84769 0.90896 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.36 2.56 44.25 0.11 14.47 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 4 C -0.55 -29.33 8.73 25.60 0.22 -29.11 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.27 11.32 21.45 0.24 -53.02 16 8 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 N -0.70 -29.87 4.95 -446.12 -2.21 -32.08 16 13 C 0.54 22.50 7.44 87.66 0.65 23.15 16 14 O -0.61 -31.39 16.48 -3.03 -0.05 -31.44 16 15 C -0.23 -6.59 2.91 -50.62 -0.15 -6.74 16 16 C -0.09 -2.01 10.13 32.00 0.32 -1.68 16 17 C -0.16 -3.94 6.63 -9.90 -0.07 -4.00 16 18 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 19 C 0.07 1.35 7.26 86.45 0.63 1.98 16 20 N -0.66 -14.55 7.63 -500.85 -3.82 -18.37 16 21 C 0.09 2.02 6.93 86.45 0.60 2.62 16 22 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 24 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.40 14.73 8.26 -92.70 -0.77 13.96 16 27 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.34 7.84 8.92 -89.69 -0.80 7.04 16 32 H 0.07 1.88 7.82 -2.39 -0.02 1.86 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -68.12 278.19 -0.81 -68.93 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -0.44 Total: 26.24 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 3.44 Total: -4.36 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -5.78 Total: -103.48 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.05 Total: -31.44 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -68.12 -0.81 -68.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693297661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.020 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds