Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00047 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47231 * 89.99796 * 8 6 4 10 10 H 1.48499 * 109.47342 * 210.00322 * 8 6 4 11 11 H 1.48505 * 109.46935 * 330.00024 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.55700 * 119.19213 * 107.22909 * 14 12 2 16 16 C 1.55987 * 81.52609 * 161.33187 * 15 14 12 17 17 C 1.54880 * 119.96431 * 204.72480 * 14 12 2 18 18 C 1.56750 * 106.43392 * 58.39409 * 16 15 14 19 19 N 1.50234 * 117.57354 * 331.93315 * 14 12 2 20 20 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 21 21 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 22 22 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 23 23 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 24 24 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 25 25 H 0.97004 * 119.99796 * 179.97438 * 7 6 4 26 26 H 1.08995 * 114.52796 * 274.49252 * 15 14 12 27 27 H 1.08998 * 114.52520 * 48.17603 * 15 14 12 28 28 H 1.09002 * 120.83217 * 197.35259 * 16 15 14 29 29 H 1.09006 * 114.43871 * 312.52799 * 17 14 12 30 30 H 1.08999 * 114.44136 * 85.93688 * 17 14 12 31 31 H 1.08997 * 111.44472 * 76.31405 * 18 16 15 32 32 H 1.08996 * 111.44531 * 201.25712 * 18 16 15 33 33 H 1.00903 * 111.00156 * 298.91468 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7349 3.9282 -0.2531 9 1 5.1082 3.5060 0.1225 10 1 3.7506 5.3550 -0.6644 11 1 2.8291 3.7587 0.9115 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 1.3600 -3.3287 -1.3054 16 6 0.9480 -4.4392 -0.2905 17 6 2.0519 -3.7527 0.5562 18 6 -0.3580 -3.9339 0.4138 19 7 0.0175 -2.4883 0.6154 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3632 -0.8900 -0.5138 23 1 1.6083 2.0285 0.5137 24 1 3.1499 1.1385 0.5139 25 1 3.8224 4.0832 -3.0901 26 1 0.5800 -3.0517 -2.0144 27 1 2.3356 -3.4780 -1.7680 28 1 1.0192 -5.4938 -0.5569 29 1 3.0672 -3.9263 0.1994 30 1 1.9416 -3.8836 1.6326 31 1 -1.2273 -4.0395 -0.2353 32 1 -0.5150 -4.4348 1.3690 33 1 0.0614 -2.2451 1.5937 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694800364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = 45.562197 kcal Electronic energy + Delta-G solvation = -15920.229607 eV Core-core repulsion = 13369.833172 eV Total energy + Delta-G solvation = -2550.396436 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31762 -38.17652 -34.89251 -32.49580 -31.15625 -29.08903 -27.35845 -25.74045 -25.24304 -23.06600 -21.13569 -19.74741 -18.60543 -16.89002 -16.69987 -15.72576 -14.94618 -14.79308 -14.43987 -14.13741 -13.65845 -12.90612 -12.51239 -12.37911 -12.29029 -11.94201 -11.82329 -11.53461 -11.42165 -11.12442 -11.06974 -10.78407 -10.46547 -10.18484 -10.08845 -9.49819 -8.98426 -8.57045 -8.54676 -7.59357 -6.04986 -4.03231 3.19994 3.31836 3.37734 3.39402 3.80063 3.90129 4.22648 4.42634 4.42927 4.61774 4.91301 5.13348 5.27752 5.29791 5.55610 5.62706 5.70079 5.87023 5.87582 5.98212 6.01450 6.10391 6.18183 6.25881 6.63925 6.76223 6.96689 7.11320 7.44720 7.65410 8.34263 8.51295 8.96622 9.03045 9.55515 11.08515 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.049102 B = 0.007423 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.104069 B = 3771.106901 C = 3841.594422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.586 5.586 3 C 0.213 3.787 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.541 3.459 13 O -0.542 6.542 14 C 0.033 3.967 15 C -0.100 4.100 16 C -0.146 4.146 17 C -0.149 4.149 18 C 0.039 3.961 19 N -0.631 5.631 20 H 0.039 0.961 21 H 0.061 0.939 22 H 0.096 0.904 23 H 0.030 0.970 24 H 0.034 0.966 25 H 0.264 0.736 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 -13.579 7.724 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.316 5.316 3 C 0.092 3.908 4 C -0.565 4.565 5 H 0.093 0.907 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.326 3.674 13 O -0.419 6.419 14 C -0.062 4.062 15 C -0.138 4.138 16 C -0.165 4.165 17 C -0.188 4.188 18 C -0.090 4.090 19 N -0.261 5.261 20 H 0.058 0.942 21 H 0.080 0.920 22 H 0.114 0.886 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.969 -13.021 7.089 16.832 hybrid contribution 0.890 0.230 1.289 1.583 sum -7.079 -12.791 8.378 16.850 Atomic orbital electron populations 1.21963 0.79739 1.03730 1.00675 1.47806 1.07097 1.06475 1.70184 1.19688 0.92397 0.80297 0.98376 1.21342 1.36733 1.07140 0.91286 0.90728 1.24865 0.95293 0.97345 0.95582 1.69904 1.41614 1.23562 1.18626 0.86841 0.80070 0.79736 0.82985 1.19956 1.21053 1.19080 1.19191 0.87021 0.83643 0.77527 1.90676 1.13456 1.86803 1.50941 1.23999 0.89697 0.92822 0.99634 1.23757 1.02654 0.93477 0.93948 1.24665 0.94967 0.98785 0.98039 1.24360 0.99739 0.95584 0.99109 1.23752 0.96971 0.88536 0.99704 1.65231 1.20594 1.20092 1.20215 0.94220 0.92011 0.88620 0.95185 0.94773 0.92608 0.90365 0.87929 0.87139 0.88331 0.91782 0.89244 0.91691 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 9.17 59.85 0.55 1.97 16 2 N -0.59 -12.79 2.86 -182.95 -0.52 -13.31 16 3 C 0.21 5.44 4.23 -5.20 -0.02 5.42 16 4 C -0.53 -15.63 9.94 -34.44 -0.34 -15.97 16 5 H 0.07 2.43 8.06 -52.48 -0.42 2.00 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 8 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 9 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 12 C 0.54 11.59 7.49 -10.98 -0.08 11.51 16 13 O -0.54 -13.79 16.44 5.55 0.09 -13.70 16 14 C 0.03 0.51 1.68 -134.43 -0.23 0.29 16 15 C -0.10 -1.39 7.66 -30.40 -0.23 -1.62 16 16 C -0.15 -1.55 6.40 -91.85 -0.59 -2.14 16 17 C -0.15 -1.95 7.10 -31.31 -0.22 -2.17 16 18 C 0.04 0.38 7.77 0.35 0.00 0.38 16 19 N -0.63 -7.82 4.35 -97.37 -0.42 -8.25 16 20 H 0.04 0.58 7.98 -51.93 -0.41 0.17 16 21 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 22 H 0.10 1.53 5.60 -51.93 -0.29 1.24 16 23 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 24 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.10 1.47 7.86 -51.93 -0.41 1.06 16 28 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.39 7.86 -51.93 -0.41 0.98 16 30 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.34 3.92 8.88 -39.29 -0.35 3.57 16 LS Contribution 269.99 15.07 4.07 4.07 Total: -1.00 -33.92 269.99 -6.66 -40.58 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.72 Total: 0.99 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.26 Total: -0.31 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.17 Total: -49.01 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.92 -6.66 -40.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694800364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.145 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds