Wall clock time and date at job start Mon Mar 30 2020 03:24:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46499 * 119.99537 * 2 1
4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1
5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2
6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2
7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3
8 8 Si 1.86797 * 120.00047 * 0.02562 * 6 4 3
9 9 H 1.48497 * 109.47231 * 89.99796 * 8 6 4
10 10 H 1.48499 * 109.47342 * 210.00322 * 8 6 4
11 11 H 1.48505 * 109.46935 * 330.00024 * 8 6 4
12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3
13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1
14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1
15 15 C 1.55700 * 119.19213 * 107.22909 * 14 12 2
16 16 C 1.55987 * 81.52609 * 161.33187 * 15 14 12
17 17 C 1.54880 * 119.96431 * 204.72480 * 14 12 2
18 18 C 1.56750 * 106.43392 * 58.39409 * 16 15 14
19 19 N 1.50234 * 117.57354 * 331.93315 * 14 12 2
20 20 H 1.08998 * 109.46921 * 269.99744 * 1 2 3
21 21 H 1.08994 * 109.46996 * 30.00327 * 1 2 3
22 22 H 1.09001 * 109.46578 * 150.00190 * 1 2 3
23 23 H 1.09001 * 109.47567 * 29.99407 * 3 2 1
24 24 H 1.09005 * 109.47076 * 149.99913 * 3 2 1
25 25 H 0.97004 * 119.99796 * 179.97438 * 7 6 4
26 26 H 1.08995 * 114.52796 * 274.49252 * 15 14 12
27 27 H 1.08998 * 114.52520 * 48.17603 * 15 14 12
28 28 H 1.09002 * 120.83217 * 197.35259 * 16 15 14
29 29 H 1.09006 * 114.43871 * 312.52799 * 17 14 12
30 30 H 1.08999 * 114.44136 * 85.93688 * 17 14 12
31 31 H 1.08997 * 111.44472 * 76.31405 * 18 16 15
32 32 H 1.08996 * 111.44531 * 201.25712 * 18 16 15
33 33 H 1.00903 * 111.00156 * 298.91468 * 19 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4486 1.7037 -1.4208
5 1 2.0975 1.0961 -2.2417
6 6 3.1268 2.8775 -1.6728
7 7 3.3456 3.2573 -2.9128
8 14 3.7349 3.9282 -0.2531
9 1 5.1082 3.5060 0.1225
10 1 3.7506 5.3550 -0.6644
11 1 2.8291 3.7587 0.9115
12 6 2.1390 -1.1672 0.0005
13 8 3.3518 -1.1671 0.0010
14 6 1.3855 -2.4723 -0.0053
15 6 1.3600 -3.3287 -1.3054
16 6 0.9480 -4.4392 -0.2905
17 6 2.0519 -3.7527 0.5562
18 6 -0.3580 -3.9339 0.4138
19 7 0.0175 -2.4883 0.6154
20 1 -0.3633 0.0000 1.0277
21 1 -0.3633 0.8899 -0.5139
22 1 -0.3632 -0.8900 -0.5138
23 1 1.6083 2.0285 0.5137
24 1 3.1499 1.1385 0.5139
25 1 3.8224 4.0832 -3.0901
26 1 0.5800 -3.0517 -2.0144
27 1 2.3356 -3.4780 -1.7680
28 1 1.0192 -5.4938 -0.5569
29 1 3.0672 -3.9263 0.1994
30 1 1.9416 -3.8836 1.6326
31 1 -1.2273 -4.0395 -0.2353
32 1 -0.5150 -4.4348 1.3690
33 1 0.0614 -2.2451 1.5937
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000694800364.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:26
Heat of formation + Delta-G solvation = 45.562197 kcal
Electronic energy + Delta-G solvation = -15920.229607 eV
Core-core repulsion = 13369.833172 eV
Total energy + Delta-G solvation = -2550.396436 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.31762 -38.17652 -34.89251 -32.49580 -31.15625 -29.08903 -27.35845 -25.74045
-25.24304 -23.06600 -21.13569 -19.74741 -18.60543 -16.89002 -16.69987 -15.72576
-14.94618 -14.79308 -14.43987 -14.13741 -13.65845 -12.90612 -12.51239 -12.37911
-12.29029 -11.94201 -11.82329 -11.53461 -11.42165 -11.12442 -11.06974 -10.78407
-10.46547 -10.18484 -10.08845 -9.49819 -8.98426 -8.57045 -8.54676 -7.59357
-6.04986 -4.03231 3.19994 3.31836 3.37734 3.39402 3.80063 3.90129
4.22648 4.42634 4.42927 4.61774 4.91301 5.13348 5.27752 5.29791
5.55610 5.62706 5.70079 5.87023 5.87582 5.98212 6.01450 6.10391
6.18183 6.25881 6.63925 6.76223 6.96689 7.11320 7.44720 7.65410
8.34263 8.51295 8.96622 9.03045 9.55515 11.08515
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.049102 B = 0.007423 C = 0.007287
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 570.104069 B = 3771.106901 C = 3841.594422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.586 5.586
3 C 0.213 3.787
4 C -0.527 4.527
5 H 0.075 0.925
6 C 0.071 3.929
7 N -0.898 5.898
8 Si 0.877 3.123
9 H -0.274 1.274
10 H -0.285 1.285
11 H -0.266 1.266
12 C 0.541 3.459
13 O -0.542 6.542
14 C 0.033 3.967
15 C -0.100 4.100
16 C -0.146 4.146
17 C -0.149 4.149
18 C 0.039 3.961
19 N -0.631 5.631
20 H 0.039 0.961
21 H 0.061 0.939
22 H 0.096 0.904
23 H 0.030 0.970
24 H 0.034 0.966
25 H 0.264 0.736
26 H 0.078 0.922
27 H 0.102 0.898
28 H 0.111 0.889
29 H 0.098 0.902
30 H 0.064 0.936
31 H 0.089 0.911
32 H 0.065 0.935
33 H 0.341 0.659
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.256 -13.579 7.724 17.670
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.316 5.316
3 C 0.092 3.908
4 C -0.565 4.565
5 H 0.093 0.907
6 C -0.131 4.131
7 N -0.537 5.537
8 Si 0.704 3.296
9 H -0.200 1.200
10 H -0.211 1.211
11 H -0.191 1.191
12 C 0.326 3.674
13 O -0.419 6.419
14 C -0.062 4.062
15 C -0.138 4.138
16 C -0.165 4.165
17 C -0.188 4.188
18 C -0.090 4.090
19 N -0.261 5.261
20 H 0.058 0.942
21 H 0.080 0.920
22 H 0.114 0.886
23 H 0.048 0.952
24 H 0.052 0.948
25 H 0.074 0.926
26 H 0.096 0.904
27 H 0.121 0.879
28 H 0.129 0.871
29 H 0.117 0.883
30 H 0.082 0.918
31 H 0.108 0.892
32 H 0.083 0.917
33 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -7.969 -13.021 7.089 16.832
hybrid contribution 0.890 0.230 1.289 1.583
sum -7.079 -12.791 8.378 16.850
Atomic orbital electron populations
1.21963 0.79739 1.03730 1.00675 1.47806 1.07097 1.06475 1.70184
1.19688 0.92397 0.80297 0.98376 1.21342 1.36733 1.07140 0.91286
0.90728 1.24865 0.95293 0.97345 0.95582 1.69904 1.41614 1.23562
1.18626 0.86841 0.80070 0.79736 0.82985 1.19956 1.21053 1.19080
1.19191 0.87021 0.83643 0.77527 1.90676 1.13456 1.86803 1.50941
1.23999 0.89697 0.92822 0.99634 1.23757 1.02654 0.93477 0.93948
1.24665 0.94967 0.98785 0.98039 1.24360 0.99739 0.95584 0.99109
1.23752 0.96971 0.88536 0.99704 1.65231 1.20594 1.20092 1.20215
0.94220 0.92011 0.88620 0.95185 0.94773 0.92608 0.90365 0.87929
0.87139 0.88331 0.91782 0.89244 0.91691 0.84342
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.42 9.17 59.85 0.55 1.97 16
2 N -0.59 -12.79 2.86 -182.95 -0.52 -13.31 16
3 C 0.21 5.44 4.23 -5.20 -0.02 5.42 16
4 C -0.53 -15.63 9.94 -34.44 -0.34 -15.97 16
5 H 0.07 2.43 8.06 -52.48 -0.42 2.00 16
6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16
7 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16
8 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16
9 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16
10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
11 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16
12 C 0.54 11.59 7.49 -10.98 -0.08 11.51 16
13 O -0.54 -13.79 16.44 5.55 0.09 -13.70 16
14 C 0.03 0.51 1.68 -134.43 -0.23 0.29 16
15 C -0.10 -1.39 7.66 -30.40 -0.23 -1.62 16
16 C -0.15 -1.55 6.40 -91.85 -0.59 -2.14 16
17 C -0.15 -1.95 7.10 -31.31 -0.22 -2.17 16
18 C 0.04 0.38 7.77 0.35 0.00 0.38 16
19 N -0.63 -7.82 4.35 -97.37 -0.42 -8.25 16
20 H 0.04 0.58 7.98 -51.93 -0.41 0.17 16
21 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16
22 H 0.10 1.53 5.60 -51.93 -0.29 1.24 16
23 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16
24 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16
25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16
26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
27 H 0.10 1.47 7.86 -51.93 -0.41 1.06 16
28 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.10 1.39 7.86 -51.93 -0.41 0.98 16
30 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16
31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.34 3.92 8.88 -39.29 -0.35 3.57 16
LS Contribution 269.99 15.07 4.07 4.07
Total: -1.00 -33.92 269.99 -6.66 -40.58
By element:
Atomic # 1 Polarization: 5.70 SS G_CDS: -4.72 Total: 0.99 kcal
Atomic # 6 Polarization: 0.95 SS G_CDS: -1.26 Total: -0.31 kcal
Atomic # 7 Polarization: -48.84 SS G_CDS: -0.17 Total: -49.01 kcal
Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -33.92 -6.66 -40.58 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000694800364.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.145 kcal
(2) G-P(sol) polarization free energy of solvation -33.924 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds