Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00047 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47231 * 89.99796 * 8 6 4 10 10 H 1.48499 * 109.47342 * 210.00322 * 8 6 4 11 11 H 1.48505 * 109.46935 * 330.00024 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.55700 * 119.19213 * 107.22909 * 14 12 2 16 16 C 1.55987 * 81.52609 * 161.33187 * 15 14 12 17 17 C 1.54880 * 119.96431 * 204.72480 * 14 12 2 18 18 C 1.56750 * 106.43392 * 58.39409 * 16 15 14 19 19 N 1.50234 * 117.57354 * 331.93315 * 14 12 2 20 20 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 21 21 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 22 22 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 23 23 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 24 24 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 25 25 H 0.97004 * 119.99796 * 179.97438 * 7 6 4 26 26 H 1.08995 * 114.52796 * 274.49252 * 15 14 12 27 27 H 1.08998 * 114.52520 * 48.17603 * 15 14 12 28 28 H 1.09002 * 120.83217 * 197.35259 * 16 15 14 29 29 H 1.09006 * 114.43871 * 312.52799 * 17 14 12 30 30 H 1.08999 * 114.44136 * 85.93688 * 17 14 12 31 31 H 1.08997 * 111.44472 * 76.31405 * 18 16 15 32 32 H 1.08996 * 111.44531 * 201.25712 * 18 16 15 33 33 H 1.00903 * 111.00156 * 298.91468 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7349 3.9282 -0.2531 9 1 5.1082 3.5060 0.1225 10 1 3.7506 5.3550 -0.6644 11 1 2.8291 3.7587 0.9115 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 1.3600 -3.3287 -1.3054 16 6 0.9480 -4.4392 -0.2905 17 6 2.0519 -3.7527 0.5562 18 6 -0.3580 -3.9339 0.4138 19 7 0.0175 -2.4883 0.6154 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3632 -0.8900 -0.5138 23 1 1.6083 2.0285 0.5137 24 1 3.1499 1.1385 0.5139 25 1 3.8224 4.0832 -3.0901 26 1 0.5800 -3.0517 -2.0144 27 1 2.3356 -3.4780 -1.7680 28 1 1.0192 -5.4938 -0.5569 29 1 3.0672 -3.9263 0.1994 30 1 1.9416 -3.8836 1.6326 31 1 -1.2273 -4.0395 -0.2353 32 1 -0.5150 -4.4348 1.3690 33 1 0.0614 -2.2451 1.5937 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694800364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = 20.227342 kcal Electronic energy + Delta-G solvation = -15921.328209 eV Core-core repulsion = 13369.833172 eV Total energy + Delta-G solvation = -2551.495037 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.43734 -39.81697 -36.69902 -34.71419 -32.17678 -30.88904 -28.68492 -27.30933 -26.31125 -24.88232 -22.53206 -20.80209 -19.95639 -19.16471 -18.13665 -17.37335 -16.54771 -15.97639 -15.92178 -15.68306 -15.22092 -14.54423 -14.01415 -13.81839 -13.71649 -13.58039 -13.26666 -13.06056 -12.77334 -12.52176 -12.37476 -12.12937 -12.09645 -11.99964 -11.77135 -11.18795 -10.85671 -10.64886 -9.57777 -9.35351 -8.36566 -6.42214 1.30549 1.34761 1.43837 1.60112 2.28855 2.30975 2.79463 2.97255 3.26180 3.39662 3.56207 3.68838 4.06317 4.42458 4.58609 4.62368 4.68064 4.75551 4.80475 4.83460 4.88373 4.90327 4.93832 4.95468 5.12943 5.21823 5.35491 5.43052 5.65805 6.19357 6.23995 6.58467 6.69285 7.17310 7.35795 8.80639 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.049102 B = 0.007423 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.104069 B = 3771.106901 C = 3841.594422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.595 5.595 3 C 0.221 3.779 4 C -0.539 4.539 5 H 0.025 0.975 6 C 0.010 3.990 7 N -0.945 5.945 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.271 1.271 11 H -0.239 1.239 12 C 0.529 3.471 13 O -0.596 6.596 14 C 0.020 3.980 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.149 4.149 18 C 0.045 3.955 19 N -0.632 5.632 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.110 0.890 23 H 0.050 0.950 24 H 0.018 0.982 25 H 0.269 0.731 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.039 -14.775 9.989 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.325 5.325 3 C 0.099 3.901 4 C -0.578 4.578 5 H 0.044 0.956 6 C -0.188 4.188 7 N -0.585 5.585 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.162 1.162 12 C 0.317 3.683 13 O -0.477 6.477 14 C -0.074 4.074 15 C -0.151 4.151 16 C -0.129 4.129 17 C -0.188 4.188 18 C -0.083 4.083 19 N -0.263 5.263 20 H 0.091 0.909 21 H 0.067 0.933 22 H 0.128 0.872 23 H 0.068 0.932 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.160 0.840 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.816 -14.243 9.361 19.669 hybrid contribution 1.422 0.557 0.488 1.603 sum -8.395 -13.687 9.849 18.836 Atomic orbital electron populations 1.22173 0.76938 1.03844 1.02801 1.47966 1.08865 1.05579 1.70046 1.19377 0.92657 0.82684 0.95427 1.21545 1.36999 1.06941 0.92274 0.95626 1.25895 0.95180 0.98869 0.98835 1.70055 1.42608 1.24500 1.21306 0.85670 0.79523 0.77799 0.79692 1.20070 1.19623 1.16194 1.20257 0.86888 0.85370 0.75828 1.90624 1.16063 1.87876 1.53166 1.23921 0.91605 0.90067 1.01812 1.23823 1.02124 0.95201 0.93971 1.24659 0.94266 0.99279 0.94728 1.24346 0.99703 0.94407 1.00371 1.23929 0.96533 0.86420 1.01369 1.65134 1.17828 1.22679 1.20630 0.90905 0.93257 0.87212 0.93176 0.96422 0.92157 0.90469 0.89538 0.83959 0.90183 0.90252 0.87707 0.88724 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.81 9.17 127.77 1.17 3.98 16 2 N -0.60 -26.23 2.86 -851.12 -2.43 -28.66 16 3 C 0.22 11.40 4.23 85.63 0.36 11.76 16 4 C -0.54 -33.25 9.94 25.60 0.25 -33.00 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.62 5.47 84.66 0.46 1.08 16 7 N -0.94 -61.24 13.96 21.45 0.30 -60.94 16 8 Si 0.95 45.70 27.47 68.60 1.88 47.58 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 12 C 0.53 23.12 7.49 87.66 0.66 23.78 16 13 O -0.60 -31.76 16.44 -3.04 -0.05 -31.81 16 14 C 0.02 0.61 1.68 -0.17 0.00 0.61 16 15 C -0.11 -3.04 7.66 28.22 0.22 -2.82 16 16 C -0.11 -1.96 6.40 -11.59 -0.07 -2.04 16 17 C -0.15 -3.65 7.10 27.63 0.20 -3.45 16 18 C 0.05 0.66 7.77 86.86 0.67 1.34 16 19 N -0.63 -13.69 4.35 -461.97 -2.01 -15.69 16 20 H 0.07 1.94 7.98 -2.39 -0.02 1.93 16 21 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 22 H 0.11 3.35 5.60 -2.39 -0.01 3.33 16 23 H 0.05 2.37 7.13 -2.39 -0.02 2.36 16 24 H 0.02 0.97 6.85 -2.38 -0.02 0.95 16 25 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 2.56 7.86 -2.39 -0.02 2.54 16 28 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 2.25 7.86 -2.38 -0.02 2.24 16 30 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.35 6.76 8.88 -89.69 -0.80 5.97 16 Total: -1.00 -78.25 269.99 1.87 -76.38 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.25 Total: 11.90 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 3.92 Total: 1.24 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -4.14 Total: -105.30 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.05 Total: -31.81 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.58 kcal Total: -78.25 1.87 -76.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694800364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.610 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds