Wall clock time and date at job start Mon Mar 30 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99947 * 2 1 4 4 C 1.50700 * 109.46967 * 269.99896 * 3 2 1 5 5 H 1.08005 * 120.00097 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00199 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99731 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00372 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46844 * 90.00009 * 8 6 4 10 10 H 1.48495 * 109.47533 * 210.00490 * 8 6 4 11 11 H 1.48500 * 109.47131 * 330.00865 * 8 6 4 12 12 C 1.34770 * 120.00253 * 179.97438 * 2 1 3 13 13 O 1.21614 * 120.00440 * 174.35651 * 12 2 1 14 14 C 1.47101 * 120.00154 * 354.63255 * 12 2 1 15 15 C 1.32610 * 124.62559 * 173.15950 * 14 12 2 16 16 C 1.51114 * 110.76362 * 179.89921 * 15 14 12 17 17 C 1.54576 * 104.88950 * 343.75001 * 16 15 14 18 18 H 1.09001 * 111.01775 * 266.71983 * 17 16 15 19 19 N 1.46905 * 110.98555 * 142.93748 * 17 16 15 20 20 C 1.51117 * 124.61799 * 353.45784 * 14 12 2 21 21 H 1.08993 * 109.47243 * 263.73589 * 1 2 3 22 22 H 1.09002 * 109.46956 * 23.74376 * 1 2 3 23 23 H 1.09006 * 109.46957 * 143.74002 * 1 2 3 24 24 H 1.09001 * 109.47033 * 29.99160 * 3 2 1 25 25 H 1.08991 * 109.47538 * 149.99623 * 3 2 1 26 26 H 0.96997 * 119.99667 * 179.97438 * 7 6 4 27 27 H 1.07998 * 124.61884 * 359.97438 * 15 14 12 28 28 H 1.08994 * 110.50117 * 224.81280 * 16 15 14 29 29 H 1.08996 * 110.27206 * 102.57159 * 16 15 14 30 30 H 1.00902 * 110.99167 * 67.69095 * 19 17 16 31 31 H 1.00890 * 111.00418 * 191.64415 * 19 17 16 32 32 H 1.09000 * 110.36350 * 315.40317 * 20 14 12 33 33 H 1.08997 * 110.36255 * 77.72262 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8780 -1.6729 7 7 3.5533 3.6181 -0.6733 8 14 3.4380 3.4168 -3.4340 9 1 2.3077 4.2590 -3.9015 10 1 4.6979 4.2002 -3.4962 11 1 3.5560 2.2195 -4.3045 12 6 2.1389 -1.1671 0.0005 13 8 3.3506 -1.1698 -0.1030 14 6 1.4083 -2.4382 0.1203 15 6 1.9599 -3.6384 0.0018 16 6 0.9245 -4.7240 0.1833 17 6 -0.2808 -4.0170 0.8442 18 1 -0.2342 -4.0980 1.9302 19 7 -1.5498 -4.5527 0.3335 20 6 -0.0743 -2.5543 0.3887 21 1 -0.3633 -0.1121 1.0214 22 1 -0.3633 0.9407 -0.4138 23 1 -0.3633 -0.8287 -0.6079 24 1 1.6083 2.0284 0.5137 25 1 3.1498 1.1385 0.5138 26 1 4.0301 4.4440 -0.8506 27 1 3.0066 -3.8157 -0.1962 28 1 1.3063 -5.5107 0.8340 29 1 0.6380 -5.1381 -0.7834 30 1 -1.6848 -5.5075 0.6306 31 1 -2.3262 -3.9732 0.6148 32 1 -0.3717 -1.8653 1.1792 33 1 -0.6411 -2.3567 -0.5211 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695667877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:33 Heat of formation + Delta-G solvation = -5.600857 kcal Electronic energy + Delta-G solvation = -15419.133003 eV Core-core repulsion = 12866.517971 eV Total energy + Delta-G solvation = -2552.615032 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70632 -37.65663 -34.86483 -33.02353 -32.50331 -29.21840 -27.27854 -27.07249 -25.59697 -23.14539 -20.50338 -20.07108 -17.93107 -16.53363 -16.17619 -16.11796 -15.50049 -15.18790 -14.43377 -14.32041 -13.51537 -12.91602 -12.56167 -12.43630 -12.28816 -12.21882 -11.82213 -11.76382 -11.35076 -11.21050 -10.85399 -10.65149 -10.37707 -10.09975 -9.58565 -9.05101 -8.90733 -8.68356 -8.40142 -7.55567 -6.00722 -4.05095 1.80471 3.33022 3.39390 3.44847 3.93785 4.08625 4.27237 4.46843 4.49763 4.73292 5.03370 5.20413 5.33319 5.55816 5.63428 5.66018 5.70357 5.82073 5.89301 5.98211 6.03039 6.28770 6.49779 6.76507 6.95314 7.12702 7.20695 7.46161 7.59099 7.95979 8.27161 8.47030 8.94223 9.14181 9.59795 11.07360 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046897 B = 0.006298 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.914204 B = 4444.572828 C = 4553.121012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.551 3.449 13 O -0.540 6.540 14 C -0.172 4.172 15 C -0.097 4.097 16 C -0.095 4.095 17 C 0.078 3.922 18 H 0.049 0.951 19 N -0.841 5.841 20 C -0.089 4.089 21 H 0.044 0.956 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.263 0.737 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.341 0.659 31 H 0.343 0.657 32 H 0.079 0.921 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 -14.034 3.825 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.327 5.327 3 C 0.126 3.874 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.339 3.661 13 O -0.419 6.419 14 C -0.176 4.176 15 C -0.117 4.117 16 C -0.132 4.132 17 C -0.034 4.034 18 H 0.067 0.933 19 N -0.371 5.371 20 C -0.126 4.126 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.155 0.845 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.098 0.902 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.755 -13.681 3.101 17.086 hybrid contribution -0.100 0.374 0.048 0.390 sum -9.854 -13.307 3.149 16.856 Atomic orbital electron populations 1.22208 0.81647 1.03355 1.00031 1.48025 1.06163 1.07670 1.70818 1.19313 0.92460 0.78072 0.97578 1.21444 1.36374 1.06114 0.92309 0.92439 1.24940 0.95363 0.96398 0.97471 1.69935 1.38563 1.14353 1.30726 0.86483 0.77642 0.78562 0.84670 1.20646 1.21084 1.19881 1.17871 0.87002 0.83304 0.77972 1.90759 1.13849 1.87111 1.50228 1.22010 0.95772 0.94452 1.05357 1.23828 0.99397 0.93272 0.95225 1.21430 0.93043 0.96976 1.01780 1.22264 0.89800 0.95136 0.96163 0.93341 1.58718 1.03921 1.06849 1.67630 1.21807 0.93479 0.95178 1.02157 0.93792 0.90966 0.91121 0.94927 0.93967 0.92754 0.84527 0.91030 0.89034 0.84712 0.84391 0.90215 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 8.89 59.85 0.53 1.72 16 2 N -0.60 -13.36 2.86 -184.36 -0.53 -13.89 16 3 C 0.24 6.65 5.09 -5.19 -0.03 6.62 16 4 C -0.52 -15.36 9.39 -34.44 -0.32 -15.68 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.55 12.40 7.63 -12.67 -0.10 12.31 16 13 O -0.54 -14.55 16.42 5.27 0.09 -14.46 16 14 C -0.17 -2.91 5.91 -102.73 -0.61 -3.51 16 15 C -0.10 -1.44 10.44 -36.01 -0.38 -1.81 16 16 C -0.09 -1.04 6.53 -26.85 -0.18 -1.22 16 17 C 0.08 0.80 4.28 -66.05 -0.28 0.52 16 18 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 19 N -0.84 -7.01 9.29 -3.26 -0.03 -7.04 16 20 C -0.09 -1.13 4.20 -26.85 -0.11 -1.24 16 21 H 0.04 0.62 6.78 -51.93 -0.35 0.27 16 22 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 23 H 0.07 1.03 4.59 -51.93 -0.24 0.79 16 24 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 25 H 0.04 1.28 7.51 -51.93 -0.39 0.89 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.14 2.07 8.04 -52.49 -0.42 1.65 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 30 H 0.34 2.21 9.08 -39.29 -0.36 1.85 16 31 H 0.34 2.38 9.03 -39.30 -0.35 2.03 16 32 H 0.08 0.95 5.93 -51.93 -0.31 0.65 16 33 H 0.09 1.19 6.45 -51.93 -0.33 0.85 16 LS Contribution 274.50 15.07 4.14 4.14 Total: -1.00 -34.20 274.50 -6.59 -40.78 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.40 Total: 0.19 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.57 Total: -0.65 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.18 Total: -47.36 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.20 -6.59 -40.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695667877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.180 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds