Wall clock time and date at job start Mon Mar 30 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99947 * 2 1 4 4 C 1.50700 * 109.46967 * 269.99896 * 3 2 1 5 5 H 1.08005 * 120.00097 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00199 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99731 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00372 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46844 * 90.00009 * 8 6 4 10 10 H 1.48495 * 109.47533 * 210.00490 * 8 6 4 11 11 H 1.48500 * 109.47131 * 330.00865 * 8 6 4 12 12 C 1.34770 * 120.00253 * 179.97438 * 2 1 3 13 13 O 1.21614 * 120.00440 * 174.35651 * 12 2 1 14 14 C 1.47101 * 120.00154 * 354.63255 * 12 2 1 15 15 C 1.32610 * 124.62559 * 173.15950 * 14 12 2 16 16 C 1.51114 * 110.76362 * 179.89921 * 15 14 12 17 17 C 1.54576 * 104.88950 * 343.75001 * 16 15 14 18 18 H 1.09001 * 111.01775 * 266.71983 * 17 16 15 19 19 N 1.46905 * 110.98555 * 142.93748 * 17 16 15 20 20 C 1.51117 * 124.61799 * 353.45784 * 14 12 2 21 21 H 1.08993 * 109.47243 * 263.73589 * 1 2 3 22 22 H 1.09002 * 109.46956 * 23.74376 * 1 2 3 23 23 H 1.09006 * 109.46957 * 143.74002 * 1 2 3 24 24 H 1.09001 * 109.47033 * 29.99160 * 3 2 1 25 25 H 1.08991 * 109.47538 * 149.99623 * 3 2 1 26 26 H 0.96997 * 119.99667 * 179.97438 * 7 6 4 27 27 H 1.07998 * 124.61884 * 359.97438 * 15 14 12 28 28 H 1.08994 * 110.50117 * 224.81280 * 16 15 14 29 29 H 1.08996 * 110.27206 * 102.57159 * 16 15 14 30 30 H 1.00902 * 110.99167 * 67.69095 * 19 17 16 31 31 H 1.00890 * 111.00418 * 191.64415 * 19 17 16 32 32 H 1.09000 * 110.36350 * 315.40317 * 20 14 12 33 33 H 1.08997 * 110.36255 * 77.72262 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8780 -1.6729 7 7 3.5533 3.6181 -0.6733 8 14 3.4380 3.4168 -3.4340 9 1 2.3077 4.2590 -3.9015 10 1 4.6979 4.2002 -3.4962 11 1 3.5560 2.2195 -4.3045 12 6 2.1389 -1.1671 0.0005 13 8 3.3506 -1.1698 -0.1030 14 6 1.4083 -2.4382 0.1203 15 6 1.9599 -3.6384 0.0018 16 6 0.9245 -4.7240 0.1833 17 6 -0.2808 -4.0170 0.8442 18 1 -0.2342 -4.0980 1.9302 19 7 -1.5498 -4.5527 0.3335 20 6 -0.0743 -2.5543 0.3887 21 1 -0.3633 -0.1121 1.0214 22 1 -0.3633 0.9407 -0.4138 23 1 -0.3633 -0.8287 -0.6079 24 1 1.6083 2.0284 0.5137 25 1 3.1498 1.1385 0.5138 26 1 4.0301 4.4440 -0.8506 27 1 3.0066 -3.8157 -0.1962 28 1 1.3063 -5.5107 0.8340 29 1 0.6380 -5.1381 -0.7834 30 1 -1.6848 -5.5075 0.6306 31 1 -2.3262 -3.9732 0.6148 32 1 -0.3717 -1.8653 1.1792 33 1 -0.6411 -2.3567 -0.5211 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695667877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:33 Heat of formation + Delta-G solvation = -31.641503 kcal Electronic energy + Delta-G solvation = -15420.262210 eV Core-core repulsion = 12866.517971 eV Total energy + Delta-G solvation = -2553.744239 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14962 -38.98639 -36.72107 -34.80195 -33.78133 -30.75149 -28.73527 -28.42705 -27.01468 -25.14990 -21.75194 -21.31703 -19.33179 -18.73407 -17.55316 -17.29023 -17.00713 -16.39365 -16.10305 -15.88965 -15.03153 -14.34956 -14.18076 -13.91146 -13.55424 -13.33783 -13.23006 -13.19196 -13.06080 -12.73573 -12.59222 -12.43216 -12.21649 -11.72612 -11.48158 -10.71930 -10.66428 -10.03573 -9.57640 -9.33127 -8.24648 -6.40130 0.46007 1.34622 1.38098 1.48824 2.24920 2.41867 2.46177 3.04126 3.44489 3.52539 3.72762 4.03376 4.17167 4.34191 4.52753 4.60820 4.75843 4.80133 4.88228 4.93668 4.98902 5.02624 5.14590 5.16187 5.40516 5.53194 5.55747 5.82445 6.02875 6.33033 6.66390 6.71347 6.74990 7.24332 7.42187 8.82342 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046897 B = 0.006298 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.914204 B = 4444.572828 C = 4553.121012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.603 5.603 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.971 3.029 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.539 3.461 13 O -0.604 6.604 14 C -0.202 4.202 15 C -0.078 4.078 16 C -0.088 4.088 17 C 0.089 3.911 18 H 0.061 0.939 19 N -0.843 5.843 20 C -0.081 4.081 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.028 0.972 25 H -0.004 1.004 26 H 0.268 0.732 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.354 0.646 31 H 0.353 0.647 32 H 0.087 0.913 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 -15.608 3.265 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.333 5.333 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.067 0.933 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.330 3.670 13 O -0.488 6.488 14 C -0.206 4.206 15 C -0.098 4.098 16 C -0.126 4.126 17 C -0.022 4.022 18 H 0.079 0.921 19 N -0.376 5.376 20 C -0.118 4.118 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.046 0.954 25 H 0.014 0.986 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.106 0.894 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.978 -15.270 2.556 19.575 hybrid contribution 0.604 0.800 0.259 1.035 sum -11.374 -14.470 2.815 18.619 Atomic orbital electron populations 1.22538 0.77988 1.04210 1.02679 1.48048 1.08453 1.06187 1.70577 1.18813 0.91018 0.80284 0.96205 1.21672 1.37180 1.06579 0.92894 0.93262 1.25881 0.94709 0.96283 1.02249 1.70048 1.38852 1.14793 1.33082 0.85375 0.78283 0.78128 0.78771 1.18484 1.20314 1.20077 1.18830 0.86706 0.85036 0.76461 1.90704 1.16693 1.88185 1.53191 1.21834 0.98202 0.91852 1.08682 1.24216 0.99824 0.94137 0.91611 1.21487 0.92073 0.96075 1.02915 1.22110 0.90399 0.93022 0.96713 0.92108 1.58643 1.03397 1.07875 1.67688 1.21752 0.90038 0.97447 1.02592 0.90528 0.91582 0.88443 0.95389 0.98602 0.92271 0.85855 0.88411 0.88154 0.83189 0.83255 0.89443 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.17 8.89 127.77 1.14 3.31 16 2 N -0.60 -27.79 2.86 -855.46 -2.44 -30.23 16 3 C 0.26 14.72 5.09 85.63 0.44 15.16 16 4 C -0.54 -33.00 9.39 25.60 0.24 -32.76 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.46 5.46 84.66 0.46 0.92 16 7 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 8 Si 0.97 46.31 29.54 68.60 2.03 48.33 16 9 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 C 0.54 25.11 7.63 86.57 0.66 25.77 16 13 O -0.60 -34.52 16.42 -4.08 -0.07 -34.59 16 14 C -0.20 -6.68 5.91 -18.56 -0.11 -6.79 16 15 C -0.08 -2.20 10.44 24.66 0.26 -1.94 16 16 C -0.09 -1.63 6.53 30.52 0.20 -1.43 16 17 C 0.09 1.48 4.28 45.99 0.20 1.68 16 18 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 19 N -0.84 -10.47 9.29 -164.23 -1.53 -11.99 16 20 C -0.08 -1.84 4.20 30.52 0.13 -1.71 16 21 H 0.08 1.99 6.78 -2.39 -0.02 1.97 16 22 H 0.07 2.21 8.02 -2.39 -0.02 2.19 16 23 H 0.10 2.64 4.59 -2.38 -0.01 2.63 16 24 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 25 H 0.00 -0.27 7.51 -2.39 -0.02 -0.29 16 26 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.12 3.77 8.04 -2.91 -0.02 3.75 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.80 8.08 -2.39 -0.02 1.78 16 30 H 0.35 3.02 9.08 -89.69 -0.81 2.21 16 31 H 0.35 3.42 9.03 -89.70 -0.81 2.61 16 32 H 0.09 1.82 5.93 -2.39 -0.01 1.80 16 33 H 0.10 2.13 6.45 -2.39 -0.02 2.11 16 Total: -1.00 -78.06 274.50 1.39 -76.67 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -0.49 Total: 6.86 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 3.61 Total: 2.21 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.69 Total: -99.49 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.07 Total: -34.59 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.06 1.39 -76.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695667877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.032 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds