Wall clock time and date at job start Mon Mar 30 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50696 * 109.47154 * 240.00347 * 2 1 3 5 5 H 1.08004 * 119.99910 * 245.62805 * 4 2 1 6 6 C 1.37873 * 120.00460 * 65.62816 * 4 2 1 7 7 N 1.31516 * 120.00242 * 197.51474 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 17.50622 * 6 4 2 9 9 H 1.48498 * 109.47073 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47564 * 300.00637 * 8 6 4 11 11 H 1.48503 * 109.46766 * 60.00289 * 8 6 4 12 12 N 1.46498 * 109.47021 * 119.99957 * 2 1 3 13 13 C 1.34773 * 120.00367 * 274.99968 * 12 2 1 14 14 O 1.21613 * 119.99582 * 0.02562 * 13 12 2 15 15 C 1.47101 * 120.00448 * 180.02562 * 13 12 2 16 16 C 1.32610 * 124.62434 * 180.02562 * 15 13 12 17 17 C 1.51107 * 110.76085 * 179.97438 * 16 15 13 18 18 C 1.54576 * 104.84085 * 343.40225 * 17 16 15 19 19 H 1.09008 * 110.98402 * 266.89108 * 18 17 16 20 20 N 1.46902 * 110.98587 * 143.12466 * 18 17 16 21 21 C 1.51114 * 124.61859 * 359.72368 * 15 13 12 22 22 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 23 23 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 24 24 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 25 25 H 0.97000 * 119.99642 * 354.87764 * 7 6 4 26 26 H 0.97005 * 119.99732 * 95.00666 * 12 2 1 27 27 H 1.08003 * 124.61813 * 0.02562 * 16 15 13 28 28 H 1.09001 * 110.36759 * 102.24171 * 17 16 15 29 29 H 1.09005 * 110.37036 * 224.56515 * 17 16 15 30 30 H 1.00903 * 110.99205 * 61.45909 * 20 18 17 31 31 H 1.00900 * 111.00221 * 185.40209 * 20 18 17 32 32 H 1.09004 * 110.36393 * 315.43980 * 21 15 13 33 33 H 1.09004 * 110.36584 * 77.75611 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9162 -0.9294 -3.5505 8 14 1.3111 1.6199 -2.6502 9 1 1.1181 1.9460 -4.0860 10 1 0.0453 1.8621 -1.9125 11 1 2.3839 2.4791 -2.0878 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8574 1.1615 2.4118 15 6 2.6379 -0.7116 3.5581 16 6 2.7990 -0.1413 4.7444 17 6 3.3179 -1.1399 5.7528 18 6 3.0534 -2.5221 5.1133 19 1 2.0939 -2.9252 5.4377 20 7 4.1438 -3.4590 5.4157 21 6 3.0212 -2.1724 3.6097 22 1 -0.3633 0.4124 -0.9413 23 1 -0.3633 -1.0214 0.1135 24 1 -0.3634 0.6090 0.8277 25 1 2.2403 -1.8401 -3.4691 26 1 2.2491 -1.6318 1.1525 27 1 2.5873 0.8955 4.9606 28 1 4.3860 -0.9952 5.9150 29 1 2.7745 -1.0468 6.6932 30 1 4.2257 -3.6095 6.4100 31 1 4.0159 -4.3325 4.9272 32 1 2.2760 -2.7785 3.0944 33 1 4.0057 -2.3222 3.1664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695672762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:52 Heat of formation + Delta-G solvation = -30.766138 kcal Electronic energy + Delta-G solvation = -15260.258243 eV Core-core repulsion = 12706.551963 eV Total energy + Delta-G solvation = -2553.706280 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62510 -37.89429 -34.94204 -33.02717 -32.40219 -29.97928 -28.10999 -27.04359 -24.82078 -22.29552 -20.56508 -19.68601 -18.80733 -17.54973 -16.64167 -16.18972 -15.43001 -15.26926 -14.32514 -13.99374 -13.41243 -12.84631 -12.79235 -12.65335 -12.39062 -12.21919 -12.07302 -11.67270 -11.51411 -11.38429 -11.05241 -10.46075 -10.01526 -9.78425 -9.28548 -9.08375 -9.04099 -8.79940 -8.30275 -8.12678 -6.57122 -4.20063 1.65230 3.40223 3.46591 3.61580 3.84546 4.03559 4.20607 4.40678 4.43592 4.66788 4.99746 5.18388 5.19292 5.52132 5.54920 5.68309 5.72235 5.84749 5.93406 6.36919 6.46612 6.57619 6.64496 6.69787 6.90225 6.98989 7.15914 7.32418 7.42526 7.68621 8.24944 8.51742 8.72459 9.00775 9.48770 10.83741 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045119 B = 0.006462 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.438719 B = 4332.082286 C = 4722.667782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.041 0.959 4 C -0.617 4.617 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.898 5.898 8 Si 1.043 2.957 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.695 5.695 13 C 0.550 3.450 14 O -0.559 6.559 15 C -0.175 4.175 16 C -0.092 4.092 17 C -0.097 4.097 18 C 0.083 3.917 19 H 0.049 0.951 20 N -0.841 5.841 21 C -0.087 4.087 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.029 0.971 25 H 0.268 0.732 26 H 0.393 0.607 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.341 0.659 31 H 0.344 0.656 32 H 0.072 0.928 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -4.145 16.939 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.136 3.864 3 H 0.059 0.941 4 C -0.655 4.655 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.531 5.531 8 Si 0.870 3.130 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.206 1.206 12 N -0.341 5.341 13 C 0.337 3.663 14 O -0.440 6.440 15 C -0.178 4.178 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.028 4.028 19 H 0.067 0.933 20 N -0.372 5.372 21 C -0.124 4.124 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.227 0.773 27 H 0.156 0.844 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.091 0.909 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.247 -1.643 15.459 15.596 hybrid contribution -0.134 -2.346 1.460 2.767 sum 1.114 -3.990 16.918 17.418 Atomic orbital electron populations 1.22494 0.98849 1.00086 1.00393 1.19027 0.90607 0.94250 0.82504 0.94096 1.22074 1.41751 1.10532 0.91127 0.92075 1.25690 0.94241 1.05127 0.91719 1.70884 1.41026 1.09844 1.31366 0.84073 0.77664 0.75097 0.76151 1.20891 1.19739 1.20608 1.46211 1.64411 1.13712 1.09812 1.17986 0.78510 0.86546 0.83287 1.90728 1.52192 1.15718 1.85346 1.21980 1.04193 0.96621 0.95025 1.23840 0.94305 0.99547 0.93563 1.21459 1.02230 0.92195 0.97540 1.22126 0.92246 0.92844 0.95587 0.93288 1.58710 1.47396 1.17092 1.13954 1.21249 1.02600 0.92745 0.95819 0.91886 0.93771 0.95173 0.92148 0.77350 0.84436 0.88884 0.90842 0.84599 0.84288 0.90945 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.16 37.16 0.34 -3.39 16 2 C 0.24 5.97 2.14 -69.08 -0.15 5.83 16 3 H 0.04 1.11 6.23 -51.93 -0.32 0.78 16 4 C -0.62 -17.05 9.00 -34.44 -0.31 -17.36 16 5 H 0.06 1.76 7.96 -52.48 -0.42 1.34 16 6 C 0.04 1.10 5.29 -17.82 -0.09 1.01 16 7 N -0.90 -26.99 13.70 55.43 0.76 -26.23 16 8 Si 1.04 25.52 26.29 -169.99 -4.47 21.05 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.23 5.76 56.52 0.33 -5.90 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.69 -14.87 5.06 -56.12 -0.28 -15.15 16 13 C 0.55 11.37 7.76 -12.67 -0.10 11.27 16 14 O -0.56 -13.44 16.43 5.27 0.09 -13.35 16 15 C -0.17 -2.77 6.10 -102.73 -0.63 -3.40 16 16 C -0.09 -1.26 10.43 -36.01 -0.38 -1.64 16 17 C -0.10 -1.00 6.53 -26.86 -0.18 -1.17 16 18 C 0.08 0.84 4.26 -66.14 -0.28 0.56 16 19 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 20 N -0.84 -7.11 9.28 -3.33 -0.03 -7.15 16 21 C -0.09 -1.10 5.75 -26.94 -0.15 -1.26 16 22 H 0.06 1.49 4.88 -51.93 -0.25 1.24 16 23 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.27 7.98 8.73 -40.82 -0.36 7.62 16 26 H 0.39 7.54 7.54 -40.82 -0.31 7.23 16 27 H 0.14 1.88 8.03 -52.48 -0.42 1.46 16 28 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.34 2.21 9.07 -39.29 -0.36 1.86 16 31 H 0.34 2.51 9.07 -39.29 -0.36 2.16 16 32 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 33 H 0.09 1.20 8.07 -51.93 -0.42 0.79 16 LS Contribution 275.23 15.07 4.15 4.15 Total: -1.00 -32.09 275.23 -6.32 -38.40 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.60 Total: 7.82 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.92 Total: -9.54 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.44 Total: -48.53 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.47 Total: 21.05 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.09 -6.32 -38.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.636 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds